basic.py 192 KB
Newer Older
wxchan's avatar
wxchan committed
1
# coding: utf-8
2
"""Wrapper for C API of LightGBM."""
3
import abc
wxchan's avatar
wxchan committed
4
import ctypes
5
import inspect
6
import json
wxchan's avatar
wxchan committed
7
import warnings
8
from collections import OrderedDict
9
from copy import deepcopy
10
from enum import Enum
11
from functools import wraps
12
from os import SEEK_END, environ
13
14
from os.path import getsize
from pathlib import Path
15
from tempfile import NamedTemporaryFile
16
from typing import TYPE_CHECKING, Any, Callable, Dict, Iterable, List, Optional, Set, Tuple, Union
wxchan's avatar
wxchan committed
17
18
19
20

import numpy as np
import scipy.sparse

21
from .compat import (PANDAS_INSTALLED, PYARROW_INSTALLED, arrow_cffi, arrow_is_floating, arrow_is_integer, concat,
22
23
                     dt_DataTable, pa_Array, pa_chunked_array, pa_ChunkedArray, pa_compute, pa_Table,
                     pd_CategoricalDtype, pd_DataFrame, pd_Series)
wxchan's avatar
wxchan committed
24
25
from .libpath import find_lib_path

26
27
28
if TYPE_CHECKING:
    from typing import Literal

29
30
31
32
33
34
35
    # typing.TypeGuard was only introduced in Python 3.10
    try:
        from typing import TypeGuard
    except ImportError:
        from typing_extensions import TypeGuard


36
37
38
39
40
41
42
43
44
__all__ = [
    'Booster',
    'Dataset',
    'LGBMDeprecationWarning',
    'LightGBMError',
    'register_logger',
    'Sequence',
]

45
_BoosterHandle = ctypes.c_void_p
46
_DatasetHandle = ctypes.c_void_p
47
48
49
50
_ctypes_int_ptr = Union[
    "ctypes._Pointer[ctypes.c_int32]",
    "ctypes._Pointer[ctypes.c_int64]"
]
51
52
53
54
_ctypes_int_array = Union[
    "ctypes.Array[ctypes._Pointer[ctypes.c_int32]]",
    "ctypes.Array[ctypes._Pointer[ctypes.c_int64]]"
]
55
56
57
58
59
60
61
62
_ctypes_float_ptr = Union[
    "ctypes._Pointer[ctypes.c_float]",
    "ctypes._Pointer[ctypes.c_double]"
]
_ctypes_float_array = Union[
    "ctypes.Array[ctypes._Pointer[ctypes.c_float]]",
    "ctypes.Array[ctypes._Pointer[ctypes.c_double]]"
]
63
_LGBM_EvalFunctionResultType = Tuple[str, float, bool]
64
_LGBM_BoosterBestScoreType = Dict[str, Dict[str, float]]
65
_LGBM_BoosterEvalMethodResultType = Tuple[str, str, float, bool]
66
_LGBM_BoosterEvalMethodResultWithStandardDeviationType = Tuple[str, str, float, bool, float]
67
68
_LGBM_CategoricalFeatureConfiguration = Union[List[str], List[int], "Literal['auto']"]
_LGBM_FeatureNameConfiguration = Union[List[str], "Literal['auto']"]
69
70
71
72
_LGBM_GroupType = Union[
    List[float],
    List[int],
    np.ndarray,
73
74
75
    pd_Series,
    pa_Array,
    pa_ChunkedArray,
76
]
77
78
79
80
_LGBM_PositionType = Union[
    np.ndarray,
    pd_Series
]
81
82
83
84
85
86
_LGBM_InitScoreType = Union[
    List[float],
    List[List[float]],
    np.ndarray,
    pd_Series,
    pd_DataFrame,
87
88
89
    pa_Table,
    pa_Array,
    pa_ChunkedArray,
90
]
91
92
93
94
95
96
97
98
99
_LGBM_TrainDataType = Union[
    str,
    Path,
    np.ndarray,
    pd_DataFrame,
    dt_DataTable,
    scipy.sparse.spmatrix,
    "Sequence",
    List["Sequence"],
100
101
    List[np.ndarray],
    pa_Table
102
]
103
_LGBM_LabelType = Union[
104
105
    List[float],
    List[int],
106
107
    np.ndarray,
    pd_Series,
108
109
110
    pd_DataFrame,
    pa_Array,
    pa_ChunkedArray,
111
]
112
113
114
115
116
117
118
119
_LGBM_PredictDataType = Union[
    str,
    Path,
    np.ndarray,
    pd_DataFrame,
    dt_DataTable,
    scipy.sparse.spmatrix
]
120
121
122
123
_LGBM_WeightType = Union[
    List[float],
    List[int],
    np.ndarray,
124
125
126
    pd_Series,
    pa_Array,
    pa_ChunkedArray,
127
]
128
129
130
ZERO_THRESHOLD = 1e-35


131
132
133
134
def _is_zero(x: float) -> bool:
    return -ZERO_THRESHOLD <= x <= ZERO_THRESHOLD


135
def _get_sample_count(total_nrow: int, params: str) -> int:
136
137
138
    sample_cnt = ctypes.c_int(0)
    _safe_call(_LIB.LGBM_GetSampleCount(
        ctypes.c_int32(total_nrow),
139
        _c_str(params),
140
141
142
143
        ctypes.byref(sample_cnt),
    ))
    return sample_cnt.value

wxchan's avatar
wxchan committed
144

145
146
147
148
149
150
class _MissingType(Enum):
    NONE = 'None'
    NAN = 'NaN'
    ZERO = 'Zero'


151
class _DummyLogger:
152
    def info(self, msg: str) -> None:
153
        print(msg)  # noqa: T201
154

155
    def warning(self, msg: str) -> None:
156
157
158
        warnings.warn(msg, stacklevel=3)


159
160
161
_LOGGER: Any = _DummyLogger()
_INFO_METHOD_NAME = "info"
_WARNING_METHOD_NAME = "warning"
162
163


164
165
166
167
def _has_method(logger: Any, method_name: str) -> bool:
    return callable(getattr(logger, method_name, None))


168
169
170
def register_logger(
    logger: Any, info_method_name: str = "info", warning_method_name: str = "warning"
) -> None:
171
172
173
174
    """Register custom logger.

    Parameters
    ----------
175
    logger : Any
176
        Custom logger.
177
178
179
180
    info_method_name : str, optional (default="info")
        Method used to log info messages.
    warning_method_name : str, optional (default="warning")
        Method used to log warning messages.
181
    """
182
183
184
185
186
187
    if not _has_method(logger, info_method_name) or not _has_method(logger, warning_method_name):
        raise TypeError(
            f"Logger must provide '{info_method_name}' and '{warning_method_name}' method"
        )

    global _LOGGER, _INFO_METHOD_NAME, _WARNING_METHOD_NAME
188
    _LOGGER = logger
189
190
    _INFO_METHOD_NAME = info_method_name
    _WARNING_METHOD_NAME = warning_method_name
191
192


193
def _normalize_native_string(func: Callable[[str], None]) -> Callable[[str], None]:
194
    """Join log messages from native library which come by chunks."""
195
    msg_normalized: List[str] = []
196
197

    @wraps(func)
198
    def wrapper(msg: str) -> None:
199
200
201
202
203
204
205
206
207
208
209
        nonlocal msg_normalized
        if msg.strip() == '':
            msg = ''.join(msg_normalized)
            msg_normalized = []
            return func(msg)
        else:
            msg_normalized.append(msg)

    return wrapper


210
def _log_info(msg: str) -> None:
211
    getattr(_LOGGER, _INFO_METHOD_NAME)(msg)
212
213


214
def _log_warning(msg: str) -> None:
215
    getattr(_LOGGER, _WARNING_METHOD_NAME)(msg)
216
217
218


@_normalize_native_string
219
def _log_native(msg: str) -> None:
220
    getattr(_LOGGER, _INFO_METHOD_NAME)(msg)
221
222


223
def _log_callback(msg: bytes) -> None:
224
    """Redirect logs from native library into Python."""
225
    _log_native(str(msg.decode('utf-8')))
226
227


228
def _load_lib() -> ctypes.CDLL:
229
    """Load LightGBM library."""
wxchan's avatar
wxchan committed
230
231
232
    lib_path = find_lib_path()
    lib = ctypes.cdll.LoadLibrary(lib_path[0])
    lib.LGBM_GetLastError.restype = ctypes.c_char_p
233
    callback = ctypes.CFUNCTYPE(None, ctypes.c_char_p)
234
    lib.callback = callback(_log_callback)  # type: ignore[attr-defined]
235
    if lib.LGBM_RegisterLogCallback(lib.callback) != 0:
236
        raise LightGBMError(lib.LGBM_GetLastError().decode('utf-8'))
wxchan's avatar
wxchan committed
237
238
    return lib

wxchan's avatar
wxchan committed
239

240
241
242
243
244
245
246
# we don't need lib_lightgbm while building docs
_LIB: ctypes.CDLL
if environ.get('LIGHTGBM_BUILD_DOC', False):
    from unittest.mock import Mock  # isort: skip
    _LIB = Mock(ctypes.CDLL)  # type: ignore
else:
    _LIB = _load_lib()
wxchan's avatar
wxchan committed
247

wxchan's avatar
wxchan committed
248

249
_NUMERIC_TYPES = (int, float, bool)
250
_ArrayLike = Union[List, np.ndarray, pd_Series]
251
252


253
def _safe_call(ret: int) -> None:
254
255
    """Check the return value from C API call.

wxchan's avatar
wxchan committed
256
257
258
    Parameters
    ----------
    ret : int
259
        The return value from C API calls.
wxchan's avatar
wxchan committed
260
261
    """
    if ret != 0:
262
        raise LightGBMError(_LIB.LGBM_GetLastError().decode('utf-8'))
wxchan's avatar
wxchan committed
263

wxchan's avatar
wxchan committed
264

265
def _is_numeric(obj: Any) -> bool:
266
    """Check whether object is a number or not, include numpy number, etc."""
wxchan's avatar
wxchan committed
267
268
269
    try:
        float(obj)
        return True
wxchan's avatar
wxchan committed
270
271
272
    except (TypeError, ValueError):
        # TypeError: obj is not a string or a number
        # ValueError: invalid literal
wxchan's avatar
wxchan committed
273
274
        return False

wxchan's avatar
wxchan committed
275

276
def _is_numpy_1d_array(data: Any) -> bool:
277
    """Check whether data is a numpy 1-D array."""
278
    return isinstance(data, np.ndarray) and len(data.shape) == 1
wxchan's avatar
wxchan committed
279

wxchan's avatar
wxchan committed
280

281
def _is_numpy_column_array(data: Any) -> bool:
282
283
284
285
286
287
288
    """Check whether data is a column numpy array."""
    if not isinstance(data, np.ndarray):
        return False
    shape = data.shape
    return len(shape) == 2 and shape[1] == 1


289
def _cast_numpy_array_to_dtype(array: np.ndarray, dtype: "np.typing.DTypeLike") -> np.ndarray:
290
    """Cast numpy array to given dtype."""
291
292
293
294
295
    if array.dtype == dtype:
        return array
    return array.astype(dtype=dtype, copy=False)


296
def _is_1d_list(data: Any) -> bool:
297
    """Check whether data is a 1-D list."""
298
    return isinstance(data, list) and (not data or _is_numeric(data[0]))
wxchan's avatar
wxchan committed
299

wxchan's avatar
wxchan committed
300

301
302
303
304
305
306
307
308
309
310
311
312
313
314
def _is_list_of_numpy_arrays(data: Any) -> "TypeGuard[List[np.ndarray]]":
    return (
        isinstance(data, list)
        and all(isinstance(x, np.ndarray) for x in data)
    )


def _is_list_of_sequences(data: Any) -> "TypeGuard[List[Sequence]]":
    return (
        isinstance(data, list)
        and all(isinstance(x, Sequence) for x in data)
    )


315
316
317
def _is_1d_collection(data: Any) -> bool:
    """Check whether data is a 1-D collection."""
    return (
318
        _is_numpy_1d_array(data)
319
        or _is_numpy_column_array(data)
320
        or _is_1d_list(data)
321
322
323
324
        or isinstance(data, pd_Series)
    )


325
326
def _list_to_1d_numpy(
    data: Any,
327
328
    dtype: "np.typing.DTypeLike",
    name: str
329
) -> np.ndarray:
330
    """Convert data to numpy 1-D array."""
331
    if _is_numpy_1d_array(data):
332
        return _cast_numpy_array_to_dtype(data, dtype)
333
    elif _is_numpy_column_array(data):
334
335
        _log_warning('Converting column-vector to 1d array')
        array = data.ravel()
336
        return _cast_numpy_array_to_dtype(array, dtype)
337
    elif _is_1d_list(data):
wxchan's avatar
wxchan committed
338
        return np.array(data, dtype=dtype, copy=False)
339
    elif isinstance(data, pd_Series):
340
        _check_for_bad_pandas_dtypes(data.to_frame().dtypes)
341
        return np.array(data, dtype=dtype, copy=False)  # SparseArray should be supported as well
wxchan's avatar
wxchan committed
342
    else:
343
344
        raise TypeError(f"Wrong type({type(data).__name__}) for {name}.\n"
                        "It should be list, numpy 1-D array or pandas Series")
wxchan's avatar
wxchan committed
345

wxchan's avatar
wxchan committed
346

347
348
349
350
351
352
353
def _is_numpy_2d_array(data: Any) -> bool:
    """Check whether data is a numpy 2-D array."""
    return isinstance(data, np.ndarray) and len(data.shape) == 2 and data.shape[1] > 1


def _is_2d_list(data: Any) -> bool:
    """Check whether data is a 2-D list."""
354
    return isinstance(data, list) and len(data) > 0 and _is_1d_list(data[0])
355
356
357
358
359
360
361
362
363
364
365


def _is_2d_collection(data: Any) -> bool:
    """Check whether data is a 2-D collection."""
    return (
        _is_numpy_2d_array(data)
        or _is_2d_list(data)
        or isinstance(data, pd_DataFrame)
    )


366
367
368
369
370
def _is_pyarrow_array(data: Any) -> bool:
    """Check whether data is a PyArrow array."""
    return isinstance(data, (pa_Array, pa_ChunkedArray))


371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
def _is_pyarrow_table(data: Any) -> bool:
    """Check whether data is a PyArrow table."""
    return isinstance(data, pa_Table)


class _ArrowCArray:
    """Simple wrapper around the C representation of an Arrow type."""

    n_chunks: int
    chunks: arrow_cffi.CData
    schema: arrow_cffi.CData

    def __init__(self, n_chunks: int, chunks: arrow_cffi.CData, schema: arrow_cffi.CData):
        self.n_chunks = n_chunks
        self.chunks = chunks
        self.schema = schema

    @property
    def chunks_ptr(self) -> int:
        """Returns the address of the pointer to the list of chunks making up the array."""
        return int(arrow_cffi.cast("uintptr_t", arrow_cffi.addressof(self.chunks[0])))

    @property
    def schema_ptr(self) -> int:
        """Returns the address of the pointer to the schema of the array."""
        return int(arrow_cffi.cast("uintptr_t", self.schema))


def _export_arrow_to_c(data: pa_Table) -> _ArrowCArray:
    """Export an Arrow type to its C representation."""
    # Obtain objects to export
402
403
404
405
406
    if isinstance(data, pa_Array):
        export_objects = [data]
    elif isinstance(data, pa_ChunkedArray):
        export_objects = data.chunks
    elif isinstance(data, pa_Table):
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
        export_objects = data.to_batches()
    else:
        raise ValueError(f"data of type '{type(data)}' cannot be exported to Arrow")

    # Prepare export
    chunks = arrow_cffi.new("struct ArrowArray[]", len(export_objects))
    schema = arrow_cffi.new("struct ArrowSchema*")

    # Export all objects
    for i, obj in enumerate(export_objects):
        chunk_ptr = int(arrow_cffi.cast("uintptr_t", arrow_cffi.addressof(chunks[i])))
        if i == 0:
            schema_ptr = int(arrow_cffi.cast("uintptr_t", schema))
            obj._export_to_c(chunk_ptr, schema_ptr)
        else:
            obj._export_to_c(chunk_ptr)

    return _ArrowCArray(len(chunks), chunks, schema)



428
429
def _data_to_2d_numpy(
    data: Any,
430
431
    dtype: "np.typing.DTypeLike",
    name: str
432
) -> np.ndarray:
433
434
    """Convert data to numpy 2-D array."""
    if _is_numpy_2d_array(data):
435
        return _cast_numpy_array_to_dtype(data, dtype)
436
437
438
    if _is_2d_list(data):
        return np.array(data, dtype=dtype)
    if isinstance(data, pd_DataFrame):
439
        _check_for_bad_pandas_dtypes(data.dtypes)
440
        return _cast_numpy_array_to_dtype(data.values, dtype)
441
442
443
444
    raise TypeError(f"Wrong type({type(data).__name__}) for {name}.\n"
                    "It should be list of lists, numpy 2-D array or pandas DataFrame")


445
def _cfloat32_array_to_numpy(*, cptr: "ctypes._Pointer", length: int) -> np.ndarray:
446
    """Convert a ctypes float pointer array to a numpy array."""
wxchan's avatar
wxchan committed
447
    if isinstance(cptr, ctypes.POINTER(ctypes.c_float)):
448
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
wxchan's avatar
wxchan committed
449
    else:
450
        raise RuntimeError('Expected float pointer')
wxchan's avatar
wxchan committed
451

Guolin Ke's avatar
Guolin Ke committed
452

453
def _cfloat64_array_to_numpy(*, cptr: "ctypes._Pointer", length: int) -> np.ndarray:
454
    """Convert a ctypes double pointer array to a numpy array."""
Guolin Ke's avatar
Guolin Ke committed
455
    if isinstance(cptr, ctypes.POINTER(ctypes.c_double)):
456
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
Guolin Ke's avatar
Guolin Ke committed
457
458
459
    else:
        raise RuntimeError('Expected double pointer')

wxchan's avatar
wxchan committed
460

461
def _cint32_array_to_numpy(*, cptr: "ctypes._Pointer", length: int) -> np.ndarray:
462
    """Convert a ctypes int pointer array to a numpy array."""
wxchan's avatar
wxchan committed
463
    if isinstance(cptr, ctypes.POINTER(ctypes.c_int32)):
464
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
wxchan's avatar
wxchan committed
465
    else:
466
467
468
        raise RuntimeError('Expected int32 pointer')


469
def _cint64_array_to_numpy(*, cptr: "ctypes._Pointer", length: int) -> np.ndarray:
470
471
    """Convert a ctypes int pointer array to a numpy array."""
    if isinstance(cptr, ctypes.POINTER(ctypes.c_int64)):
472
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
473
474
    else:
        raise RuntimeError('Expected int64 pointer')
wxchan's avatar
wxchan committed
475

wxchan's avatar
wxchan committed
476

477
def _c_str(string: str) -> ctypes.c_char_p:
478
    """Convert a Python string to C string."""
wxchan's avatar
wxchan committed
479
480
    return ctypes.c_char_p(string.encode('utf-8'))

wxchan's avatar
wxchan committed
481

482
def _c_array(ctype: type, values: List[Any]) -> ctypes.Array:
483
    """Convert a Python array to C array."""
484
    return (ctype * len(values))(*values)  # type: ignore[operator]
wxchan's avatar
wxchan committed
485

wxchan's avatar
wxchan committed
486

487
def _json_default_with_numpy(obj: Any) -> Any:
488
489
490
491
492
493
494
495
496
    """Convert numpy classes to JSON serializable objects."""
    if isinstance(obj, (np.integer, np.floating, np.bool_)):
        return obj.item()
    elif isinstance(obj, np.ndarray):
        return obj.tolist()
    else:
        return obj


497
498
499
500
501
502
503
504
def _to_string(x: Union[int, float, str, List]) -> str:
    if isinstance(x, list):
        val_list = ",".join(str(val) for val in x)
        return f"[{val_list}]"
    else:
        return str(x)


505
def _param_dict_to_str(data: Optional[Dict[str, Any]]) -> str:
506
    """Convert Python dictionary to string, which is passed to C API."""
507
    if data is None or not data:
wxchan's avatar
wxchan committed
508
509
510
        return ""
    pairs = []
    for key, val in data.items():
511
        if isinstance(val, (list, tuple, set)) or _is_numpy_1d_array(val):
512
            pairs.append(f"{key}={','.join(map(_to_string, val))}")
513
        elif isinstance(val, (str, Path, _NUMERIC_TYPES)) or _is_numeric(val):
514
            pairs.append(f"{key}={val}")
515
        elif val is not None:
516
            raise TypeError(f'Unknown type of parameter:{key}, got:{type(val).__name__}')
wxchan's avatar
wxchan committed
517
    return ' '.join(pairs)
518

wxchan's avatar
wxchan committed
519

520
class _TempFile:
521
522
    """Proxy class to workaround errors on Windows."""

523
524
525
    def __enter__(self):
        with NamedTemporaryFile(prefix="lightgbm_tmp_", delete=True) as f:
            self.name = f.name
526
            self.path = Path(self.name)
527
        return self
wxchan's avatar
wxchan committed
528

529
    def __exit__(self, exc_type, exc_val, exc_tb):
530
531
        if self.path.is_file():
            self.path.unlink()
532

wxchan's avatar
wxchan committed
533

534
class LightGBMError(Exception):
535
536
    """Error thrown by LightGBM."""

537
538
539
    pass


540
541
542
543
544
545
546
547
# DeprecationWarning is not shown by default, so let's create our own with higher level
class LGBMDeprecationWarning(UserWarning):
    """Custom deprecation warning."""

    pass


class _ConfigAliases:
548
549
550
551
    # lazy evaluation to allow import without dynamic library, e.g., for docs generation
    aliases = None

    @staticmethod
552
    def _get_all_param_aliases() -> Dict[str, List[str]]:
553
554
555
        buffer_len = 1 << 20
        tmp_out_len = ctypes.c_int64(0)
        string_buffer = ctypes.create_string_buffer(buffer_len)
556
        ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
557
558
559
560
561
562
563
564
        _safe_call(_LIB.LGBM_DumpParamAliases(
            ctypes.c_int64(buffer_len),
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
        # if buffer length is not long enough, re-allocate a buffer
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
565
            ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
566
567
568
569
            _safe_call(_LIB.LGBM_DumpParamAliases(
                ctypes.c_int64(actual_len),
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
570
        return json.loads(
571
            string_buffer.value.decode('utf-8'),
572
            object_hook=lambda obj: {k: [k] + v for k, v in obj.items()}
573
        )
574
575

    @classmethod
576
577
578
    def get(cls, *args) -> Set[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
579
580
        ret = set()
        for i in args:
581
            ret.update(cls.get_sorted(i))
582
583
        return ret

584
585
586
587
588
589
    @classmethod
    def get_sorted(cls, name: str) -> List[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
        return cls.aliases.get(name, [name])

590
    @classmethod
591
592
593
    def get_by_alias(cls, *args) -> Set[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
594
595
596
597
        ret = set(args)
        for arg in args:
            for aliases in cls.aliases.values():
                if arg in aliases:
598
                    ret.update(aliases)
599
600
601
                    break
        return ret

602

603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
def _choose_param_value(main_param_name: str, params: Dict[str, Any], default_value: Any) -> Dict[str, Any]:
    """Get a single parameter value, accounting for aliases.

    Parameters
    ----------
    main_param_name : str
        Name of the main parameter to get a value for. One of the keys of ``_ConfigAliases``.
    params : dict
        Dictionary of LightGBM parameters.
    default_value : Any
        Default value to use for the parameter, if none is found in ``params``.

    Returns
    -------
    params : dict
        A ``params`` dict with exactly one value for ``main_param_name``, and all aliases ``main_param_name`` removed.
        If both ``main_param_name`` and one or more aliases for it are found, the value of ``main_param_name`` will be preferred.
    """
    # avoid side effects on passed-in parameters
    params = deepcopy(params)

624
625
    aliases = _ConfigAliases.get_sorted(main_param_name)
    aliases = [a for a in aliases if a != main_param_name]
626
627

    # if main_param_name was provided, keep that value and remove all aliases
628
    if main_param_name in params.keys():
629
630
631
        for param in aliases:
            params.pop(param, None)
        return params
632

633
634
635
636
637
    # if main param name was not found, search for an alias
    for param in aliases:
        if param in params.keys():
            params[main_param_name] = params[param]
            break
638

639
640
641
642
643
644
645
    if main_param_name in params.keys():
        for param in aliases:
            params.pop(param, None)
        return params

    # neither of main_param_name, aliases were found
    params[main_param_name] = default_value
646
647
648
649

    return params


650
_MAX_INT32 = (1 << 31) - 1
651

652
"""Macro definition of data type in C API of LightGBM"""
653
654
655
656
_C_API_DTYPE_FLOAT32 = 0
_C_API_DTYPE_FLOAT64 = 1
_C_API_DTYPE_INT32 = 2
_C_API_DTYPE_INT64 = 3
Guolin Ke's avatar
Guolin Ke committed
657

658
"""Matrix is row major in Python"""
659
_C_API_IS_ROW_MAJOR = 1
wxchan's avatar
wxchan committed
660

661
"""Macro definition of prediction type in C API of LightGBM"""
662
663
664
665
_C_API_PREDICT_NORMAL = 0
_C_API_PREDICT_RAW_SCORE = 1
_C_API_PREDICT_LEAF_INDEX = 2
_C_API_PREDICT_CONTRIB = 3
wxchan's avatar
wxchan committed
666

667
"""Macro definition of sparse matrix type"""
668
669
_C_API_MATRIX_TYPE_CSR = 0
_C_API_MATRIX_TYPE_CSC = 1
670

671
"""Macro definition of feature importance type"""
672
673
_C_API_FEATURE_IMPORTANCE_SPLIT = 0
_C_API_FEATURE_IMPORTANCE_GAIN = 1
674

675
"""Data type of data field"""
676
677
678
679
_FIELD_TYPE_MAPPER = {
    "label": _C_API_DTYPE_FLOAT32,
    "weight": _C_API_DTYPE_FLOAT32,
    "init_score": _C_API_DTYPE_FLOAT64,
680
681
    "group": _C_API_DTYPE_INT32,
    "position": _C_API_DTYPE_INT32
682
}
wxchan's avatar
wxchan committed
683

684
"""String name to int feature importance type mapper"""
685
686
687
688
_FEATURE_IMPORTANCE_TYPE_MAPPER = {
    "split": _C_API_FEATURE_IMPORTANCE_SPLIT,
    "gain": _C_API_FEATURE_IMPORTANCE_GAIN
}
689

wxchan's avatar
wxchan committed
690

691
def _convert_from_sliced_object(data: np.ndarray) -> np.ndarray:
692
    """Fix the memory of multi-dimensional sliced object."""
693
    if isinstance(data, np.ndarray) and isinstance(data.base, np.ndarray):
694
        if not data.flags.c_contiguous:
695
696
            _log_warning("Usage of np.ndarray subset (sliced data) is not recommended "
                         "due to it will double the peak memory cost in LightGBM.")
697
698
699
700
            return np.copy(data)
    return data


701
702
703
def _c_float_array(
    data: np.ndarray
) -> Tuple[_ctypes_float_ptr, int, np.ndarray]:
704
    """Get pointer of float numpy array / list."""
705
    if _is_1d_list(data):
wxchan's avatar
wxchan committed
706
        data = np.array(data, copy=False)
707
    if _is_numpy_1d_array(data):
708
        data = _convert_from_sliced_object(data)
709
        assert data.flags.c_contiguous
710
        ptr_data: _ctypes_float_ptr
wxchan's avatar
wxchan committed
711
712
        if data.dtype == np.float32:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_float))
713
            type_data = _C_API_DTYPE_FLOAT32
wxchan's avatar
wxchan committed
714
715
        elif data.dtype == np.float64:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_double))
716
            type_data = _C_API_DTYPE_FLOAT64
wxchan's avatar
wxchan committed
717
        else:
718
            raise TypeError(f"Expected np.float32 or np.float64, met type({data.dtype})")
wxchan's avatar
wxchan committed
719
    else:
720
        raise TypeError(f"Unknown type({type(data).__name__})")
721
    return (ptr_data, type_data, data)  # return `data` to avoid the temporary copy is freed
wxchan's avatar
wxchan committed
722

wxchan's avatar
wxchan committed
723

724
725
726
def _c_int_array(
    data: np.ndarray
) -> Tuple[_ctypes_int_ptr, int, np.ndarray]:
727
    """Get pointer of int numpy array / list."""
728
    if _is_1d_list(data):
wxchan's avatar
wxchan committed
729
        data = np.array(data, copy=False)
730
    if _is_numpy_1d_array(data):
731
        data = _convert_from_sliced_object(data)
732
        assert data.flags.c_contiguous
733
        ptr_data: _ctypes_int_ptr
wxchan's avatar
wxchan committed
734
735
        if data.dtype == np.int32:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_int32))
736
            type_data = _C_API_DTYPE_INT32
wxchan's avatar
wxchan committed
737
738
        elif data.dtype == np.int64:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_int64))
739
            type_data = _C_API_DTYPE_INT64
wxchan's avatar
wxchan committed
740
        else:
741
            raise TypeError(f"Expected np.int32 or np.int64, met type({data.dtype})")
wxchan's avatar
wxchan committed
742
    else:
743
        raise TypeError(f"Unknown type({type(data).__name__})")
744
    return (ptr_data, type_data, data)  # return `data` to avoid the temporary copy is freed
wxchan's avatar
wxchan committed
745

wxchan's avatar
wxchan committed
746

747
def _is_allowed_numpy_dtype(dtype: type) -> bool:
748
    float128 = getattr(np, 'float128', type(None))
749
750
751
752
    return (
        issubclass(dtype, (np.integer, np.floating, np.bool_))
        and not issubclass(dtype, (np.timedelta64, float128))
    )
753
754


755
def _check_for_bad_pandas_dtypes(pandas_dtypes_series: pd_Series) -> None:
756
757
    bad_pandas_dtypes = [
        f'{column_name}: {pandas_dtype}'
758
        for column_name, pandas_dtype in pandas_dtypes_series.items()
759
        if not _is_allowed_numpy_dtype(pandas_dtype.type)
760
761
762
763
    ]
    if bad_pandas_dtypes:
        raise ValueError('pandas dtypes must be int, float or bool.\n'
                         f'Fields with bad pandas dtypes: {", ".join(bad_pandas_dtypes)}')
764
765


766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
def _pandas_to_numpy(
    data: pd_DataFrame,
    target_dtype: "np.typing.DTypeLike"
) -> np.ndarray:
    _check_for_bad_pandas_dtypes(data.dtypes)
    try:
        # most common case (no nullable dtypes)
        return data.to_numpy(dtype=target_dtype, copy=False)
    except TypeError:
        # 1.0 <= pd version < 1.1 and nullable dtypes, least common case
        # raises error because array is casted to type(pd.NA) and there's no na_value argument
        return data.astype(target_dtype, copy=False).values
    except ValueError:
        # data has nullable dtypes, but we can specify na_value argument and copy will be made
        return data.to_numpy(dtype=target_dtype, na_value=np.nan)


783
def _data_from_pandas(
784
785
786
    data: pd_DataFrame,
    feature_name: _LGBM_FeatureNameConfiguration,
    categorical_feature: _LGBM_CategoricalFeatureConfiguration,
787
    pandas_categorical: Optional[List[List]]
788
789
790
791
792
793
794
795
796
797
798
799
800
) -> Tuple[np.ndarray, List[str], List[str], List[List]]:
    if len(data.shape) != 2 or data.shape[0] < 1:
        raise ValueError('Input data must be 2 dimensional and non empty.')

    # determine feature names
    if feature_name == 'auto':
        feature_name = [str(col) for col in data.columns]

    # determine categorical features
    cat_cols = [col for col, dtype in zip(data.columns, data.dtypes) if isinstance(dtype, pd_CategoricalDtype)]
    cat_cols_not_ordered = [col for col in cat_cols if not data[col].cat.ordered]
    if pandas_categorical is None:  # train dataset
        pandas_categorical = [list(data[col].cat.categories) for col in cat_cols]
801
    else:
802
803
804
805
806
807
808
809
810
811
812
813
814
815
        if len(cat_cols) != len(pandas_categorical):
            raise ValueError('train and valid dataset categorical_feature do not match.')
        for col, category in zip(cat_cols, pandas_categorical):
            if list(data[col].cat.categories) != list(category):
                data[col] = data[col].cat.set_categories(category)
    if len(cat_cols):  # cat_cols is list
        data = data.copy(deep=False)  # not alter origin DataFrame
        data[cat_cols] = data[cat_cols].apply(lambda x: x.cat.codes).replace({-1: np.nan})
    if categorical_feature == 'auto':  # use cat cols from DataFrame
        categorical_feature = cat_cols_not_ordered
    else:  # use cat cols specified by user
        categorical_feature = list(categorical_feature)  # type: ignore[assignment]

    df_dtypes = [dtype.type for dtype in data.dtypes]
816
817
    # so that the target dtype considers floats
    df_dtypes.append(np.float32)
818
    target_dtype = np.result_type(*df_dtypes)
819
820
821
822
823
824
825

    return (
        _pandas_to_numpy(data, target_dtype=target_dtype),
        feature_name,
        categorical_feature,
        pandas_categorical
    )
826
827


828
829
830
831
def _dump_pandas_categorical(
    pandas_categorical: Optional[List[List]],
    file_name: Optional[Union[str, Path]] = None
) -> str:
832
    categorical_json = json.dumps(pandas_categorical, default=_json_default_with_numpy)
833
    pandas_str = f'\npandas_categorical:{categorical_json}\n'
834
835
836
837
838
839
    if file_name is not None:
        with open(file_name, 'a') as f:
            f.write(pandas_str)
    return pandas_str


840
841
842
def _load_pandas_categorical(
    file_name: Optional[Union[str, Path]] = None,
    model_str: Optional[str] = None
843
) -> Optional[List[List]]:
844
845
    pandas_key = 'pandas_categorical:'
    offset = -len(pandas_key)
846
    if file_name is not None:
847
        max_offset = -getsize(file_name)
848
849
850
851
        with open(file_name, 'rb') as f:
            while True:
                if offset < max_offset:
                    offset = max_offset
852
                f.seek(offset, SEEK_END)
853
854
855
856
                lines = f.readlines()
                if len(lines) >= 2:
                    break
                offset *= 2
857
        last_line = lines[-1].decode('utf-8').strip()
858
        if not last_line.startswith(pandas_key):
859
            last_line = lines[-2].decode('utf-8').strip()
860
    elif model_str is not None:
861
862
863
864
865
866
        idx = model_str.rfind('\n', 0, offset)
        last_line = model_str[idx:].strip()
    if last_line.startswith(pandas_key):
        return json.loads(last_line[len(pandas_key):])
    else:
        return None
867
868


869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
class Sequence(abc.ABC):
    """
    Generic data access interface.

    Object should support the following operations:

    .. code-block::

        # Get total row number.
        >>> len(seq)
        # Random access by row index. Used for data sampling.
        >>> seq[10]
        # Range data access. Used to read data in batch when constructing Dataset.
        >>> seq[0:100]
        # Optionally specify batch_size to control range data read size.
        >>> seq.batch_size

    - With random access, **data sampling does not need to go through all data**.
    - With range data access, there's **no need to read all data into memory thus reduce memory usage**.

889
890
    .. versionadded:: 3.3.0

891
892
893
894
895
896
897
898
899
    Attributes
    ----------
    batch_size : int
        Default size of a batch.
    """

    batch_size = 4096  # Defaults to read 4K rows in each batch.

    @abc.abstractmethod
900
    def __getitem__(self, idx: Union[int, slice, List[int]]) -> np.ndarray:
901
902
903
904
905
906
907
        """Return data for given row index.

        A basic implementation should look like this:

        .. code-block:: python

            if isinstance(idx, numbers.Integral):
908
                return self._get_one_line(idx)
909
            elif isinstance(idx, slice):
910
911
                return np.stack([self._get_one_line(i) for i in range(idx.start, idx.stop)])
            elif isinstance(idx, list):
912
                # Only required if using ``Dataset.subset()``.
913
                return np.array([self._get_one_line(i) for i in idx])
914
            else:
915
                raise TypeError(f"Sequence index must be integer, slice or list, got {type(idx).__name__}")
916
917
918

        Parameters
        ----------
919
        idx : int, slice[int], list[int]
920
921
922
923
            Item index.

        Returns
        -------
924
        result : numpy 1-D array or numpy 2-D array
925
            1-D array if idx is int, 2-D array if idx is slice or list.
926
927
928
929
930
931
932
933
934
        """
        raise NotImplementedError("Sub-classes of lightgbm.Sequence must implement __getitem__()")

    @abc.abstractmethod
    def __len__(self) -> int:
        """Return row count of this sequence."""
        raise NotImplementedError("Sub-classes of lightgbm.Sequence must implement __len__()")


935
class _InnerPredictor:
936
937
938
939
940
    """_InnerPredictor of LightGBM.

    Not exposed to user.
    Used only for prediction, usually used for continued training.

Nikita Titov's avatar
Nikita Titov committed
941
942
943
    .. note::

        Can be converted from Booster, but cannot be converted to Booster.
Guolin Ke's avatar
Guolin Ke committed
944
    """
945

946
947
    def __init__(
        self,
948
949
950
951
        booster_handle: _BoosterHandle,
        pandas_categorical: Optional[List[List]],
        pred_parameter: Dict[str, Any],
        manage_handle: bool
952
    ):
953
        """Initialize the _InnerPredictor.
wxchan's avatar
wxchan committed
954
955
956

        Parameters
        ----------
957
        booster_handle : object
958
            Handle of Booster.
959
960
961
962
        pandas_categorical : list of list, or None
            If provided, list of categories for ``pandas`` categorical columns.
            Where the ``i``th element of the list contains the categories for the ``i``th categorical feature.
        pred_parameter : dict
963
            Other parameters for the prediction.
964
965
        manage_handle : bool
            If ``True``, free the corresponding Booster on the C++ side when this Python object is deleted.
wxchan's avatar
wxchan committed
966
        """
967
968
969
970
971
972
973
974
        self._handle = booster_handle
        self.__is_manage_handle = manage_handle
        self.pandas_categorical = pandas_categorical
        self.pred_parameter = _param_dict_to_str(pred_parameter)

        out_num_class = ctypes.c_int(0)
        _safe_call(
            _LIB.LGBM_BoosterGetNumClasses(
975
                self._handle,
976
977
978
979
                ctypes.byref(out_num_class)
            )
        )
        self.num_class = out_num_class.value
wxchan's avatar
wxchan committed
980

981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
    @classmethod
    def from_booster(
        cls,
        booster: "Booster",
        pred_parameter: Dict[str, Any]
    ) -> "_InnerPredictor":
        """Initialize an ``_InnerPredictor`` from a ``Booster``.

        Parameters
        ----------
        booster : Booster
            Booster.
        pred_parameter : dict
            Other parameters for the prediction.
        """
        out_cur_iter = ctypes.c_int(0)
        _safe_call(
            _LIB.LGBM_BoosterGetCurrentIteration(
                booster._handle,
                ctypes.byref(out_cur_iter)
            )
        )
        return cls(
            booster_handle=booster._handle,
            pandas_categorical=booster.pandas_categorical,
            pred_parameter=pred_parameter,
            manage_handle=False
        )

    @classmethod
    def from_model_file(
        cls,
        model_file: Union[str, Path],
        pred_parameter: Dict[str, Any]
    ) -> "_InnerPredictor":
        """Initialize an ``_InnerPredictor`` from a text file containing a LightGBM model.

        Parameters
        ----------
        model_file : str or pathlib.Path
            Path to the model file.
        pred_parameter : dict
            Other parameters for the prediction.
        """
        booster_handle = ctypes.c_void_p()
        out_num_iterations = ctypes.c_int(0)
        _safe_call(
            _LIB.LGBM_BoosterCreateFromModelfile(
                _c_str(str(model_file)),
                ctypes.byref(out_num_iterations),
                ctypes.byref(booster_handle)
            )
        )
        return cls(
            booster_handle=booster_handle,
            pandas_categorical=_load_pandas_categorical(file_name=model_file),
            pred_parameter=pred_parameter,
            manage_handle=True
        )
cbecker's avatar
cbecker committed
1040

1041
    def __del__(self) -> None:
1042
1043
        try:
            if self.__is_manage_handle:
1044
                _safe_call(_LIB.LGBM_BoosterFree(self._handle))
1045
1046
        except AttributeError:
            pass
wxchan's avatar
wxchan committed
1047

1048
    def __getstate__(self) -> Dict[str, Any]:
1049
1050
        this = self.__dict__.copy()
        this.pop('handle', None)
1051
        this.pop('_handle', None)
1052
1053
        return this

1054
1055
    def predict(
        self,
1056
        data: _LGBM_PredictDataType,
1057
1058
1059
1060
1061
1062
1063
        start_iteration: int = 0,
        num_iteration: int = -1,
        raw_score: bool = False,
        pred_leaf: bool = False,
        pred_contrib: bool = False,
        data_has_header: bool = False,
        validate_features: bool = False
1064
    ) -> Union[np.ndarray, scipy.sparse.spmatrix, List[scipy.sparse.spmatrix]]:
1065
        """Predict logic.
wxchan's avatar
wxchan committed
1066
1067
1068

        Parameters
        ----------
1069
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
1070
            Data source for prediction.
1071
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
1072
1073
        start_iteration : int, optional (default=0)
            Start index of the iteration to predict.
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
        num_iteration : int, optional (default=-1)
            Iteration used for prediction.
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        pred_leaf : bool, optional (default=False)
            Whether to predict leaf index.
        pred_contrib : bool, optional (default=False)
            Whether to predict feature contributions.
        data_has_header : bool, optional (default=False)
            Whether data has header.
            Used only for txt data.
1085
1086
1087
        validate_features : bool, optional (default=False)
            If True, ensure that the features used to predict match the ones used to train.
            Used only if data is pandas DataFrame.
wxchan's avatar
wxchan committed
1088

1089
1090
            .. versionadded:: 4.0.0

wxchan's avatar
wxchan committed
1091
1092
        Returns
        -------
1093
        result : numpy array, scipy.sparse or list of scipy.sparse
1094
            Prediction result.
1095
            Can be sparse or a list of sparse objects (each element represents predictions for one class) for feature contributions (when ``pred_contrib=True``).
wxchan's avatar
wxchan committed
1096
        """
wxchan's avatar
wxchan committed
1097
        if isinstance(data, Dataset):
1098
            raise TypeError("Cannot use Dataset instance for prediction, please use raw data instead")
1099
1100
1101
1102
1103
1104
        elif isinstance(data, pd_DataFrame) and validate_features:
            data_names = [str(x) for x in data.columns]
            ptr_names = (ctypes.c_char_p * len(data_names))()
            ptr_names[:] = [x.encode('utf-8') for x in data_names]
            _safe_call(
                _LIB.LGBM_BoosterValidateFeatureNames(
1105
                    self._handle,
1106
1107
1108
1109
                    ptr_names,
                    ctypes.c_int(len(data_names)),
                )
            )
1110
1111
1112
1113
1114
1115
1116
1117
1118

        if isinstance(data, pd_DataFrame):
            data = _data_from_pandas(
                data=data,
                feature_name="auto",
                categorical_feature="auto",
                pandas_categorical=self.pandas_categorical
            )[0]

1119
        predict_type = _C_API_PREDICT_NORMAL
wxchan's avatar
wxchan committed
1120
        if raw_score:
1121
            predict_type = _C_API_PREDICT_RAW_SCORE
wxchan's avatar
wxchan committed
1122
        if pred_leaf:
1123
            predict_type = _C_API_PREDICT_LEAF_INDEX
1124
        if pred_contrib:
1125
            predict_type = _C_API_PREDICT_CONTRIB
cbecker's avatar
cbecker committed
1126

1127
        if isinstance(data, (str, Path)):
1128
            with _TempFile() as f:
wxchan's avatar
wxchan committed
1129
                _safe_call(_LIB.LGBM_BoosterPredictForFile(
1130
                    self._handle,
1131
                    _c_str(str(data)),
1132
                    ctypes.c_int(data_has_header),
Guolin Ke's avatar
Guolin Ke committed
1133
                    ctypes.c_int(predict_type),
1134
                    ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
1135
                    ctypes.c_int(num_iteration),
1136
1137
                    _c_str(self.pred_parameter),
                    _c_str(f.name)))
1138
1139
                preds = np.loadtxt(f.name, dtype=np.float64)
                nrow = preds.shape[0]
wxchan's avatar
wxchan committed
1140
        elif isinstance(data, scipy.sparse.csr_matrix):
1141
1142
1143
1144
1145
1146
            preds, nrow = self.__pred_for_csr(
                csr=data,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
Guolin Ke's avatar
Guolin Ke committed
1147
        elif isinstance(data, scipy.sparse.csc_matrix):
1148
1149
1150
1151
1152
1153
            preds, nrow = self.__pred_for_csc(
                csc=data,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
wxchan's avatar
wxchan committed
1154
        elif isinstance(data, np.ndarray):
1155
1156
1157
1158
1159
1160
            preds, nrow = self.__pred_for_np2d(
                mat=data,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
1161
1162
1163
        elif isinstance(data, list):
            try:
                data = np.array(data)
1164
1165
            except BaseException as err:
                raise ValueError('Cannot convert data list to numpy array.') from err
1166
1167
1168
1169
1170
1171
            preds, nrow = self.__pred_for_np2d(
                mat=data,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
1172
        elif isinstance(data, dt_DataTable):
1173
1174
1175
1176
1177
1178
            preds, nrow = self.__pred_for_np2d(
                mat=data.to_numpy(),
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
wxchan's avatar
wxchan committed
1179
1180
        else:
            try:
1181
                _log_warning('Converting data to scipy sparse matrix.')
wxchan's avatar
wxchan committed
1182
                csr = scipy.sparse.csr_matrix(data)
1183
1184
            except BaseException as err:
                raise TypeError(f'Cannot predict data for type {type(data).__name__}') from err
1185
1186
1187
1188
1189
1190
            preds, nrow = self.__pred_for_csr(
                csr=csr,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
wxchan's avatar
wxchan committed
1191
1192
        if pred_leaf:
            preds = preds.astype(np.int32)
1193
        is_sparse = isinstance(preds, scipy.sparse.spmatrix) or isinstance(preds, list)
1194
        if not is_sparse and preds.size != nrow:
wxchan's avatar
wxchan committed
1195
            if preds.size % nrow == 0:
1196
                preds = preds.reshape(nrow, -1)
wxchan's avatar
wxchan committed
1197
            else:
1198
                raise ValueError(f'Length of predict result ({preds.size}) cannot be divide nrow ({nrow})')
wxchan's avatar
wxchan committed
1199
1200
        return preds

1201
1202
1203
1204
1205
1206
1207
    def __get_num_preds(
        self,
        start_iteration: int,
        num_iteration: int,
        nrow: int,
        predict_type: int
    ) -> int:
1208
        """Get size of prediction result."""
1209
        if nrow > _MAX_INT32:
1210
            raise LightGBMError('LightGBM cannot perform prediction for data '
1211
                                f'with number of rows greater than MAX_INT32 ({_MAX_INT32}).\n'
1212
                                'You can split your data into chunks '
1213
                                'and then concatenate predictions for them')
Guolin Ke's avatar
Guolin Ke committed
1214
1215
        n_preds = ctypes.c_int64(0)
        _safe_call(_LIB.LGBM_BoosterCalcNumPredict(
1216
            self._handle,
Guolin Ke's avatar
Guolin Ke committed
1217
1218
            ctypes.c_int(nrow),
            ctypes.c_int(predict_type),
1219
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
1220
            ctypes.c_int(num_iteration),
Guolin Ke's avatar
Guolin Ke committed
1221
1222
            ctypes.byref(n_preds)))
        return n_preds.value
wxchan's avatar
wxchan committed
1223

1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
    def __inner_predict_np2d(
        self,
        mat: np.ndarray,
        start_iteration: int,
        num_iteration: int,
        predict_type: int,
        preds: Optional[np.ndarray]
    ) -> Tuple[np.ndarray, int]:
        if mat.dtype == np.float32 or mat.dtype == np.float64:
            data = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
        else:  # change non-float data to float data, need to copy
            data = np.array(mat.reshape(mat.size), dtype=np.float32)
        ptr_data, type_ptr_data, _ = _c_float_array(data)
1237
1238
1239
1240
1241
1242
        n_preds = self.__get_num_preds(
            start_iteration=start_iteration,
            num_iteration=num_iteration,
            nrow=mat.shape[0],
            predict_type=predict_type
        )
1243
1244
1245
1246
1247
1248
        if preds is None:
            preds = np.empty(n_preds, dtype=np.float64)
        elif len(preds.shape) != 1 or len(preds) != n_preds:
            raise ValueError("Wrong length of pre-allocated predict array")
        out_num_preds = ctypes.c_int64(0)
        _safe_call(_LIB.LGBM_BoosterPredictForMat(
1249
            self._handle,
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
            ptr_data,
            ctypes.c_int(type_ptr_data),
            ctypes.c_int32(mat.shape[0]),
            ctypes.c_int32(mat.shape[1]),
            ctypes.c_int(_C_API_IS_ROW_MAJOR),
            ctypes.c_int(predict_type),
            ctypes.c_int(start_iteration),
            ctypes.c_int(num_iteration),
            _c_str(self.pred_parameter),
            ctypes.byref(out_num_preds),
            preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
        if n_preds != out_num_preds.value:
            raise ValueError("Wrong length for predict results")
        return preds, mat.shape[0]

    def __pred_for_np2d(
        self,
        mat: np.ndarray,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
    ) -> Tuple[np.ndarray, int]:
1272
        """Predict for a 2-D numpy matrix."""
wxchan's avatar
wxchan committed
1273
        if len(mat.shape) != 2:
1274
            raise ValueError('Input numpy.ndarray or list must be 2 dimensional')
wxchan's avatar
wxchan committed
1275

1276
        nrow = mat.shape[0]
1277
1278
        if nrow > _MAX_INT32:
            sections = np.arange(start=_MAX_INT32, stop=nrow, step=_MAX_INT32)
1279
            # __get_num_preds() cannot work with nrow > MAX_INT32, so calculate overall number of predictions piecemeal
1280
            n_preds = [self.__get_num_preds(start_iteration, num_iteration, i, predict_type) for i in np.diff([0] + list(sections) + [nrow])]
1281
            n_preds_sections = np.array([0] + n_preds, dtype=np.intp).cumsum()
1282
            preds = np.empty(sum(n_preds), dtype=np.float64)
1283
1284
            for chunk, (start_idx_pred, end_idx_pred) in zip(np.array_split(mat, sections),
                                                             zip(n_preds_sections, n_preds_sections[1:])):
1285
                # avoid memory consumption by arrays concatenation operations
1286
1287
1288
1289
1290
1291
1292
                self.__inner_predict_np2d(
                    mat=chunk,
                    start_iteration=start_iteration,
                    num_iteration=num_iteration,
                    predict_type=predict_type,
                    preds=preds[start_idx_pred:end_idx_pred]
                )
1293
            return preds, nrow
wxchan's avatar
wxchan committed
1294
        else:
1295
1296
1297
1298
1299
1300
1301
            return self.__inner_predict_np2d(
                mat=mat,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type,
                preds=None
            )
wxchan's avatar
wxchan committed
1302

1303
1304
1305
    def __create_sparse_native(
        self,
        cs: Union[scipy.sparse.csc_matrix, scipy.sparse.csr_matrix],
1306
1307
1308
1309
1310
1311
        out_shape: np.ndarray,
        out_ptr_indptr: "ctypes._Pointer",
        out_ptr_indices: "ctypes._Pointer",
        out_ptr_data: "ctypes._Pointer",
        indptr_type: int,
        data_type: int,
1312
        is_csr: bool
1313
    ) -> Union[List[scipy.sparse.csc_matrix], List[scipy.sparse.csr_matrix]]:
1314
1315
1316
        # create numpy array from output arrays
        data_indices_len = out_shape[0]
        indptr_len = out_shape[1]
1317
        if indptr_type == _C_API_DTYPE_INT32:
1318
            out_indptr = _cint32_array_to_numpy(cptr=out_ptr_indptr, length=indptr_len)
1319
        elif indptr_type == _C_API_DTYPE_INT64:
1320
            out_indptr = _cint64_array_to_numpy(cptr=out_ptr_indptr, length=indptr_len)
1321
1322
        else:
            raise TypeError("Expected int32 or int64 type for indptr")
1323
        if data_type == _C_API_DTYPE_FLOAT32:
1324
            out_data = _cfloat32_array_to_numpy(cptr=out_ptr_data, length=data_indices_len)
1325
        elif data_type == _C_API_DTYPE_FLOAT64:
1326
            out_data = _cfloat64_array_to_numpy(cptr=out_ptr_data, length=data_indices_len)
1327
1328
        else:
            raise TypeError("Expected float32 or float64 type for data")
1329
        out_indices = _cint32_array_to_numpy(cptr=out_ptr_indices, length=data_indices_len)
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
        # break up indptr based on number of rows (note more than one matrix in multiclass case)
        per_class_indptr_shape = cs.indptr.shape[0]
        # for CSC there is extra column added
        if not is_csr:
            per_class_indptr_shape += 1
        out_indptr_arrays = np.split(out_indptr, out_indptr.shape[0] / per_class_indptr_shape)
        # reformat output into a csr or csc matrix or list of csr or csc matrices
        cs_output_matrices = []
        offset = 0
        for cs_indptr in out_indptr_arrays:
            matrix_indptr_len = cs_indptr[cs_indptr.shape[0] - 1]
            cs_indices = out_indices[offset + cs_indptr[0]:offset + matrix_indptr_len]
            cs_data = out_data[offset + cs_indptr[0]:offset + matrix_indptr_len]
            offset += matrix_indptr_len
            # same shape as input csr or csc matrix except extra column for expected value
            cs_shape = [cs.shape[0], cs.shape[1] + 1]
            # note: make sure we copy data as it will be deallocated next
            if is_csr:
                cs_output_matrices.append(scipy.sparse.csr_matrix((cs_data, cs_indices, cs_indptr), cs_shape))
            else:
                cs_output_matrices.append(scipy.sparse.csc_matrix((cs_data, cs_indices, cs_indptr), cs_shape))
        # free the temporary native indptr, indices, and data
        _safe_call(_LIB.LGBM_BoosterFreePredictSparse(out_ptr_indptr, out_ptr_indices, out_ptr_data,
                                                      ctypes.c_int(indptr_type), ctypes.c_int(data_type)))
        if len(cs_output_matrices) == 1:
            return cs_output_matrices[0]
        return cs_output_matrices

1358
1359
1360
1361
1362
1363
1364
1365
1366
    def __inner_predict_csr(
        self,
        csr: scipy.sparse.csr_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int,
        preds: Optional[np.ndarray]
    ) -> Tuple[np.ndarray, int]:
        nrow = len(csr.indptr) - 1
1367
1368
1369
1370
1371
1372
        n_preds = self.__get_num_preds(
            start_iteration=start_iteration,
            num_iteration=num_iteration,
            nrow=nrow,
            predict_type=predict_type
        )
1373
1374
1375
1376
1377
        if preds is None:
            preds = np.empty(n_preds, dtype=np.float64)
        elif len(preds.shape) != 1 or len(preds) != n_preds:
            raise ValueError("Wrong length of pre-allocated predict array")
        out_num_preds = ctypes.c_int64(0)
wxchan's avatar
wxchan committed
1378

1379
1380
        ptr_indptr, type_ptr_indptr, _ = _c_int_array(csr.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csr.data)
1381

1382
1383
1384
1385
        assert csr.shape[1] <= _MAX_INT32
        csr_indices = csr.indices.astype(np.int32, copy=False)

        _safe_call(_LIB.LGBM_BoosterPredictForCSR(
1386
            self._handle,
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
            ptr_indptr,
            ctypes.c_int(type_ptr_indptr),
            csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
            ptr_data,
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csr.indptr)),
            ctypes.c_int64(len(csr.data)),
            ctypes.c_int64(csr.shape[1]),
            ctypes.c_int(predict_type),
            ctypes.c_int(start_iteration),
            ctypes.c_int(num_iteration),
            _c_str(self.pred_parameter),
            ctypes.byref(out_num_preds),
            preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
        if n_preds != out_num_preds.value:
            raise ValueError("Wrong length for predict results")
        return preds, nrow

    def __inner_predict_csr_sparse(
        self,
        csr: scipy.sparse.csr_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
1411
    ) -> Tuple[Union[List[scipy.sparse.csc_matrix], List[scipy.sparse.csr_matrix]], int]:
1412
1413
1414
1415
        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csr.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csr.data)
        csr_indices = csr.indices.astype(np.int32, copy=False)
        matrix_type = _C_API_MATRIX_TYPE_CSR
1416
        out_ptr_indptr: _ctypes_int_ptr
1417
1418
1419
1420
1421
        if type_ptr_indptr == _C_API_DTYPE_INT32:
            out_ptr_indptr = ctypes.POINTER(ctypes.c_int32)()
        else:
            out_ptr_indptr = ctypes.POINTER(ctypes.c_int64)()
        out_ptr_indices = ctypes.POINTER(ctypes.c_int32)()
1422
        out_ptr_data: _ctypes_float_ptr
1423
1424
1425
1426
1427
1428
        if type_ptr_data == _C_API_DTYPE_FLOAT32:
            out_ptr_data = ctypes.POINTER(ctypes.c_float)()
        else:
            out_ptr_data = ctypes.POINTER(ctypes.c_double)()
        out_shape = np.empty(2, dtype=np.int64)
        _safe_call(_LIB.LGBM_BoosterPredictSparseOutput(
1429
            self._handle,
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
            ptr_indptr,
            ctypes.c_int(type_ptr_indptr),
            csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
            ptr_data,
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csr.indptr)),
            ctypes.c_int64(len(csr.data)),
            ctypes.c_int64(csr.shape[1]),
            ctypes.c_int(predict_type),
            ctypes.c_int(start_iteration),
            ctypes.c_int(num_iteration),
            _c_str(self.pred_parameter),
            ctypes.c_int(matrix_type),
            out_shape.ctypes.data_as(ctypes.POINTER(ctypes.c_int64)),
            ctypes.byref(out_ptr_indptr),
            ctypes.byref(out_ptr_indices),
            ctypes.byref(out_ptr_data)))
        matrices = self.__create_sparse_native(
            cs=csr,
            out_shape=out_shape,
            out_ptr_indptr=out_ptr_indptr,
            out_ptr_indices=out_ptr_indices,
            out_ptr_data=out_ptr_data,
            indptr_type=type_ptr_indptr,
            data_type=type_ptr_data,
            is_csr=True
        )
        nrow = len(csr.indptr) - 1
        return matrices, nrow

1460
1461
1462
1463
1464
1465
1466
    def __pred_for_csr(
        self,
        csr: scipy.sparse.csr_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
    ) -> Tuple[np.ndarray, int]:
1467
        """Predict for a CSR data."""
1468
        if predict_type == _C_API_PREDICT_CONTRIB:
1469
1470
1471
1472
1473
1474
            return self.__inner_predict_csr_sparse(
                csr=csr,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
1475
        nrow = len(csr.indptr) - 1
1476
1477
        if nrow > _MAX_INT32:
            sections = [0] + list(np.arange(start=_MAX_INT32, stop=nrow, step=_MAX_INT32)) + [nrow]
1478
            # __get_num_preds() cannot work with nrow > MAX_INT32, so calculate overall number of predictions piecemeal
1479
            n_preds = [self.__get_num_preds(start_iteration, num_iteration, i, predict_type) for i in np.diff(sections)]
1480
            n_preds_sections = np.array([0] + n_preds, dtype=np.intp).cumsum()
1481
            preds = np.empty(sum(n_preds), dtype=np.float64)
1482
1483
            for (start_idx, end_idx), (start_idx_pred, end_idx_pred) in zip(zip(sections, sections[1:]),
                                                                            zip(n_preds_sections, n_preds_sections[1:])):
1484
                # avoid memory consumption by arrays concatenation operations
1485
1486
1487
1488
1489
1490
1491
                self.__inner_predict_csr(
                    csr=csr[start_idx:end_idx],
                    start_iteration=start_iteration,
                    num_iteration=num_iteration,
                    predict_type=predict_type,
                    preds=preds[start_idx_pred:end_idx_pred]
                )
1492
1493
            return preds, nrow
        else:
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
            return self.__inner_predict_csr(
                csr=csr,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type,
                preds=None
            )

    def __inner_predict_sparse_csc(
        self,
1504
1505
1506
1507
        csc: scipy.sparse.csc_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
1508
1509
1510
1511
1512
    ):
        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csc.data)
        csc_indices = csc.indices.astype(np.int32, copy=False)
        matrix_type = _C_API_MATRIX_TYPE_CSC
1513
        out_ptr_indptr: _ctypes_int_ptr
1514
1515
1516
1517
1518
        if type_ptr_indptr == _C_API_DTYPE_INT32:
            out_ptr_indptr = ctypes.POINTER(ctypes.c_int32)()
        else:
            out_ptr_indptr = ctypes.POINTER(ctypes.c_int64)()
        out_ptr_indices = ctypes.POINTER(ctypes.c_int32)()
1519
        out_ptr_data: _ctypes_float_ptr
1520
1521
1522
1523
1524
1525
        if type_ptr_data == _C_API_DTYPE_FLOAT32:
            out_ptr_data = ctypes.POINTER(ctypes.c_float)()
        else:
            out_ptr_data = ctypes.POINTER(ctypes.c_double)()
        out_shape = np.empty(2, dtype=np.int64)
        _safe_call(_LIB.LGBM_BoosterPredictSparseOutput(
1526
            self._handle,
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
            ptr_indptr,
            ctypes.c_int(type_ptr_indptr),
            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
            ptr_data,
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
            ctypes.c_int(predict_type),
            ctypes.c_int(start_iteration),
            ctypes.c_int(num_iteration),
            _c_str(self.pred_parameter),
            ctypes.c_int(matrix_type),
            out_shape.ctypes.data_as(ctypes.POINTER(ctypes.c_int64)),
            ctypes.byref(out_ptr_indptr),
            ctypes.byref(out_ptr_indices),
            ctypes.byref(out_ptr_data)))
        matrices = self.__create_sparse_native(
            cs=csc,
            out_shape=out_shape,
            out_ptr_indptr=out_ptr_indptr,
            out_ptr_indices=out_ptr_indices,
            out_ptr_data=out_ptr_data,
            indptr_type=type_ptr_indptr,
            data_type=type_ptr_data,
            is_csr=False
        )
        nrow = csc.shape[0]
        return matrices, nrow
Guolin Ke's avatar
Guolin Ke committed
1556

1557
1558
1559
1560
1561
1562
1563
    def __pred_for_csc(
        self,
        csc: scipy.sparse.csc_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
    ) -> Tuple[np.ndarray, int]:
1564
        """Predict for a CSC data."""
Guolin Ke's avatar
Guolin Ke committed
1565
        nrow = csc.shape[0]
1566
        if nrow > _MAX_INT32:
1567
1568
1569
1570
1571
1572
            return self.__pred_for_csr(
                csr=csc.tocsr(),
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
1573
        if predict_type == _C_API_PREDICT_CONTRIB:
1574
1575
1576
1577
1578
1579
            return self.__inner_predict_sparse_csc(
                csc=csc,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
1580
1581
1582
1583
1584
1585
        n_preds = self.__get_num_preds(
            start_iteration=start_iteration,
            num_iteration=num_iteration,
            nrow=nrow,
            predict_type=predict_type
        )
1586
        preds = np.empty(n_preds, dtype=np.float64)
Guolin Ke's avatar
Guolin Ke committed
1587
1588
        out_num_preds = ctypes.c_int64(0)

1589
1590
        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csc.data)
Guolin Ke's avatar
Guolin Ke committed
1591

1592
        assert csc.shape[0] <= _MAX_INT32
1593
        csc_indices = csc.indices.astype(np.int32, copy=False)
1594

Guolin Ke's avatar
Guolin Ke committed
1595
        _safe_call(_LIB.LGBM_BoosterPredictForCSC(
1596
            self._handle,
Guolin Ke's avatar
Guolin Ke committed
1597
            ptr_indptr,
1598
            ctypes.c_int(type_ptr_indptr),
1599
            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
Guolin Ke's avatar
Guolin Ke committed
1600
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1601
1602
1603
1604
1605
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
            ctypes.c_int(predict_type),
1606
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
1607
            ctypes.c_int(num_iteration),
1608
            _c_str(self.pred_parameter),
Guolin Ke's avatar
Guolin Ke committed
1609
            ctypes.byref(out_num_preds),
wxchan's avatar
wxchan committed
1610
            preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
wxchan's avatar
wxchan committed
1611
        if n_preds != out_num_preds.value:
1612
            raise ValueError("Wrong length for predict results")
wxchan's avatar
wxchan committed
1613
1614
        return preds, nrow

1615
    def current_iteration(self) -> int:
1616
1617
1618
1619
1620
1621
1622
1623
1624
        """Get the index of the current iteration.

        Returns
        -------
        cur_iter : int
            The index of the current iteration.
        """
        out_cur_iter = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetCurrentIteration(
1625
            self._handle,
1626
1627
1628
            ctypes.byref(out_cur_iter)))
        return out_cur_iter.value

wxchan's avatar
wxchan committed
1629

1630
class Dataset:
wxchan's avatar
wxchan committed
1631
    """Dataset in LightGBM."""
1632

1633
1634
    def __init__(
        self,
1635
        data: _LGBM_TrainDataType,
1636
        label: Optional[_LGBM_LabelType] = None,
1637
        reference: Optional["Dataset"] = None,
1638
1639
1640
        weight: Optional[_LGBM_WeightType] = None,
        group: Optional[_LGBM_GroupType] = None,
        init_score: Optional[_LGBM_InitScoreType] = None,
1641
1642
        feature_name: _LGBM_FeatureNameConfiguration = 'auto',
        categorical_feature: _LGBM_CategoricalFeatureConfiguration = 'auto',
1643
        params: Optional[Dict[str, Any]] = None,
1644
1645
        free_raw_data: bool = True,
        position: Optional[_LGBM_PositionType] = None,
1646
    ):
1647
        """Initialize Dataset.
1648

wxchan's avatar
wxchan committed
1649
1650
        Parameters
        ----------
1651
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence, list of numpy array or pyarrow Table
wxchan's avatar
wxchan committed
1652
            Data source of Dataset.
1653
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM) or a LightGBM Dataset binary file.
1654
        label : list, numpy 1-D array, pandas Series / one-column DataFrame, pyarrow Array, pyarrow ChunkedArray or None, optional (default=None)
1655
1656
1657
            Label of the data.
        reference : Dataset or None, optional (default=None)
            If this is Dataset for validation, training data should be used as reference.
1658
        weight : list, numpy 1-D array, pandas Series, pyarrow Array, pyarrow ChunkedArray or None, optional (default=None)
1659
            Weight for each instance. Weights should be non-negative.
1660
        group : list, numpy 1-D array, pandas Series, pyarrow Array, pyarrow ChunkedArray or None, optional (default=None)
1661
1662
1663
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
1664
1665
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
1666
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), pyarrow Array, pyarrow ChunkedArray, pyarrow Table (for multi-class task) or None, optional (default=None)
1667
            Init score for Dataset.
1668
        feature_name : list of str, or 'auto', optional (default="auto")
1669
            Feature names.
1670
            If 'auto' and data is pandas DataFrame or pyarrow Table, data columns names are used.
1671
        categorical_feature : list of str or int, or 'auto', optional (default="auto")
1672
1673
            Categorical features.
            If list of int, interpreted as indices.
1674
            If list of str, interpreted as feature names (need to specify ``feature_name`` as well).
1675
            If 'auto' and data is pandas DataFrame, pandas unordered categorical columns are used.
1676
            All values in categorical features will be cast to int32 and thus should be less than int32 max value (2147483647).
1677
            Large values could be memory consuming. Consider using consecutive integers starting from zero.
1678
            All negative values in categorical features will be treated as missing values.
1679
            The output cannot be monotonically constrained with respect to a categorical feature.
1680
            Floating point numbers in categorical features will be rounded towards 0.
Nikita Titov's avatar
Nikita Titov committed
1681
        params : dict or None, optional (default=None)
1682
            Other parameters for Dataset.
Nikita Titov's avatar
Nikita Titov committed
1683
        free_raw_data : bool, optional (default=True)
1684
            If True, raw data is freed after constructing inner Dataset.
1685
1686
        position : numpy 1-D array, pandas Series or None, optional (default=None)
            Position of items used in unbiased learning-to-rank task.
wxchan's avatar
wxchan committed
1687
        """
1688
        self._handle: Optional[_DatasetHandle] = None
wxchan's avatar
wxchan committed
1689
1690
1691
1692
1693
        self.data = data
        self.label = label
        self.reference = reference
        self.weight = weight
        self.group = group
1694
        self.position = position
1695
        self.init_score = init_score
1696
1697
        self.feature_name: _LGBM_FeatureNameConfiguration = feature_name
        self.categorical_feature: _LGBM_CategoricalFeatureConfiguration = categorical_feature
1698
        self.params = deepcopy(params)
wxchan's avatar
wxchan committed
1699
        self.free_raw_data = free_raw_data
1700
        self.used_indices: Optional[List[int]] = None
1701
        self._need_slice = True
1702
        self._predictor: Optional[_InnerPredictor] = None
1703
        self.pandas_categorical: Optional[List[List]] = None
1704
        self._params_back_up = None
1705
        self.version = 0
1706
        self._start_row = 0  # Used when pushing rows one by one.
wxchan's avatar
wxchan committed
1707

1708
    def __del__(self) -> None:
1709
1710
1711
1712
        try:
            self._free_handle()
        except AttributeError:
            pass
1713

1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
    def _create_sample_indices(self, total_nrow: int) -> np.ndarray:
        """Get an array of randomly chosen indices from this ``Dataset``.

        Indices are sampled without replacement.

        Parameters
        ----------
        total_nrow : int
            Total number of rows to sample from.
            If this value is greater than the value of parameter ``bin_construct_sample_cnt``, only ``bin_construct_sample_cnt`` indices will be used.
            If Dataset has multiple input data, this should be the sum of rows of every file.

        Returns
        -------
        indices : numpy array
            Indices for sampled data.
        """
1731
        param_str = _param_dict_to_str(self.get_params())
1732
1733
        sample_cnt = _get_sample_count(total_nrow, param_str)
        indices = np.empty(sample_cnt, dtype=np.int32)
1734
        ptr_data, _, _ = _c_int_array(indices)
1735
1736
1737
1738
        actual_sample_cnt = ctypes.c_int32(0)

        _safe_call(_LIB.LGBM_SampleIndices(
            ctypes.c_int32(total_nrow),
1739
            _c_str(param_str),
1740
1741
1742
            ptr_data,
            ctypes.byref(actual_sample_cnt),
        ))
1743
1744
        assert sample_cnt == actual_sample_cnt.value
        return indices
1745

1746
1747
1748
1749
1750
    def _init_from_ref_dataset(
        self,
        total_nrow: int,
        ref_dataset: _DatasetHandle
    ) -> 'Dataset':
1751
1752
1753
1754
1755
1756
        """Create dataset from a reference dataset.

        Parameters
        ----------
        total_nrow : int
            Number of rows expected to add to dataset.
1757
1758
        ref_dataset : object
            Handle of reference dataset to extract metadata from.
1759
1760
1761
1762
1763
1764

        Returns
        -------
        self : Dataset
            Constructed Dataset object.
        """
1765
        self._handle = ctypes.c_void_p()
1766
1767
1768
        _safe_call(_LIB.LGBM_DatasetCreateByReference(
            ref_dataset,
            ctypes.c_int64(total_nrow),
1769
            ctypes.byref(self._handle),
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
        ))
        return self

    def _init_from_sample(
        self,
        sample_data: List[np.ndarray],
        sample_indices: List[np.ndarray],
        sample_cnt: int,
        total_nrow: int,
    ) -> "Dataset":
        """Create Dataset from sampled data structures.

        Parameters
        ----------
1784
        sample_data : list of numpy array
1785
            Sample data for each column.
1786
        sample_indices : list of numpy array
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
            Sample data row index for each column.
        sample_cnt : int
            Number of samples.
        total_nrow : int
            Total number of rows for all input files.

        Returns
        -------
        self : Dataset
            Constructed Dataset object.
        """
        ncol = len(sample_indices)
        assert len(sample_data) == ncol, "#sample data column != #column indices"

        for i in range(ncol):
            if sample_data[i].dtype != np.double:
                raise ValueError(f"sample_data[{i}] type {sample_data[i].dtype} is not double")
            if sample_indices[i].dtype != np.int32:
                raise ValueError(f"sample_indices[{i}] type {sample_indices[i].dtype} is not int32")

        # c type: double**
        # each double* element points to start of each column of sample data.
1809
        sample_col_ptr: _ctypes_float_array = (ctypes.POINTER(ctypes.c_double) * ncol)()
1810
1811
        # c type int**
        # each int* points to start of indices for each column
1812
        indices_col_ptr: _ctypes_int_array = (ctypes.POINTER(ctypes.c_int32) * ncol)()
1813
        for i in range(ncol):
1814
1815
            sample_col_ptr[i] = _c_float_array(sample_data[i])[0]
            indices_col_ptr[i] = _c_int_array(sample_indices[i])[0]
1816
1817

        num_per_col = np.array([len(d) for d in sample_indices], dtype=np.int32)
1818
        num_per_col_ptr, _, _ = _c_int_array(num_per_col)
1819

1820
        self._handle = ctypes.c_void_p()
1821
        params_str = _param_dict_to_str(self.get_params())
1822
1823
1824
1825
1826
1827
1828
        _safe_call(_LIB.LGBM_DatasetCreateFromSampledColumn(
            ctypes.cast(sample_col_ptr, ctypes.POINTER(ctypes.POINTER(ctypes.c_double))),
            ctypes.cast(indices_col_ptr, ctypes.POINTER(ctypes.POINTER(ctypes.c_int32))),
            ctypes.c_int32(ncol),
            num_per_col_ptr,
            ctypes.c_int32(sample_cnt),
            ctypes.c_int32(total_nrow),
1829
            ctypes.c_int64(total_nrow),
1830
            _c_str(params_str),
1831
            ctypes.byref(self._handle),
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
1843
1844
1845
1846
1847
1848
1849
        ))
        return self

    def _push_rows(self, data: np.ndarray) -> 'Dataset':
        """Add rows to Dataset.

        Parameters
        ----------
        data : numpy 1-D array
            New data to add to the Dataset.

        Returns
        -------
        self : Dataset
            Dataset object.
        """
        nrow, ncol = data.shape
        data = data.reshape(data.size)
1850
        data_ptr, data_type, _ = _c_float_array(data)
1851
1852

        _safe_call(_LIB.LGBM_DatasetPushRows(
1853
            self._handle,
1854
1855
1856
1857
1858
1859
1860
1861
1862
            data_ptr,
            data_type,
            ctypes.c_int32(nrow),
            ctypes.c_int32(ncol),
            ctypes.c_int32(self._start_row),
        ))
        self._start_row += nrow
        return self

1863
    def get_params(self) -> Dict[str, Any]:
1864
1865
1866
1867
        """Get the used parameters in the Dataset.

        Returns
        -------
1868
        params : dict
1869
1870
1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
            The used parameters in this Dataset object.
        """
        if self.params is not None:
            # no min_data, nthreads and verbose in this function
            dataset_params = _ConfigAliases.get("bin_construct_sample_cnt",
                                                "categorical_feature",
                                                "data_random_seed",
                                                "enable_bundle",
                                                "feature_pre_filter",
                                                "forcedbins_filename",
                                                "group_column",
                                                "header",
                                                "ignore_column",
                                                "is_enable_sparse",
                                                "label_column",
1884
                                                "linear_tree",
1885
1886
1887
1888
                                                "max_bin",
                                                "max_bin_by_feature",
                                                "min_data_in_bin",
                                                "pre_partition",
Nikita Titov's avatar
Nikita Titov committed
1889
                                                "precise_float_parser",
1890
1891
1892
1893
1894
                                                "two_round",
                                                "use_missing",
                                                "weight_column",
                                                "zero_as_missing")
            return {k: v for k, v in self.params.items() if k in dataset_params}
1895
1896
        else:
            return {}
1897

1898
    def _free_handle(self) -> "Dataset":
1899
1900
1901
        if self._handle is not None:
            _safe_call(_LIB.LGBM_DatasetFree(self._handle))
            self._handle = None
1902
        self._need_slice = True
Guolin Ke's avatar
Guolin Ke committed
1903
1904
        if self.used_indices is not None:
            self.data = None
Nikita Titov's avatar
Nikita Titov committed
1905
        return self
wxchan's avatar
wxchan committed
1906

1907
1908
1909
    def _set_init_score_by_predictor(
        self,
        predictor: Optional[_InnerPredictor],
1910
        data: _LGBM_TrainDataType,
1911
        used_indices: Optional[Union[List[int], np.ndarray]]
1912
    ) -> "Dataset":
Guolin Ke's avatar
Guolin Ke committed
1913
        data_has_header = False
1914
        if isinstance(data, (str, Path)) and self.params is not None:
Guolin Ke's avatar
Guolin Ke committed
1915
            # check data has header or not
1916
            data_has_header = any(self.params.get(alias, False) for alias in _ConfigAliases.get("header"))
Guolin Ke's avatar
Guolin Ke committed
1917
        num_data = self.num_data()
1918
        if predictor is not None:
1919
1920
1921
1922
1923
            init_score: Union[np.ndarray, scipy.sparse.spmatrix] = predictor.predict(
                data=data,
                raw_score=True,
                data_has_header=data_has_header
            )
1924
            init_score = init_score.ravel()
1925
            if used_indices is not None:
1926
                assert not self._need_slice
1927
                if isinstance(data, (str, Path)):
1928
                    sub_init_score = np.empty(num_data * predictor.num_class, dtype=np.float64)
1929
                    assert num_data == len(used_indices)
1930
1931
                    for i in range(len(used_indices)):
                        for j in range(predictor.num_class):
1932
1933
1934
1935
                            sub_init_score[i * predictor.num_class + j] = init_score[used_indices[i] * predictor.num_class + j]
                    init_score = sub_init_score
            if predictor.num_class > 1:
                # need to regroup init_score
1936
                new_init_score = np.empty(init_score.size, dtype=np.float64)
1937
1938
                for i in range(num_data):
                    for j in range(predictor.num_class):
1939
1940
1941
                        new_init_score[j * num_data + i] = init_score[i * predictor.num_class + j]
                init_score = new_init_score
        elif self.init_score is not None:
1942
            init_score = np.full_like(self.init_score, fill_value=0.0, dtype=np.float64)
1943
1944
        else:
            return self
Guolin Ke's avatar
Guolin Ke committed
1945
        self.set_init_score(init_score)
1946
        return self
Guolin Ke's avatar
Guolin Ke committed
1947

1948
1949
    def _lazy_init(
        self,
1950
        data: Optional[_LGBM_TrainDataType],
1951
1952
1953
1954
1955
1956
1957
1958
        label: Optional[_LGBM_LabelType],
        reference: Optional["Dataset"],
        weight: Optional[_LGBM_WeightType],
        group: Optional[_LGBM_GroupType],
        init_score: Optional[_LGBM_InitScoreType],
        predictor: Optional[_InnerPredictor],
        feature_name: _LGBM_FeatureNameConfiguration,
        categorical_feature: _LGBM_CategoricalFeatureConfiguration,
1959
1960
        params: Optional[Dict[str, Any]],
        position: Optional[_LGBM_PositionType]
1961
    ) -> "Dataset":
wxchan's avatar
wxchan committed
1962
        if data is None:
1963
            self._handle = None
Nikita Titov's avatar
Nikita Titov committed
1964
            return self
Guolin Ke's avatar
Guolin Ke committed
1965
1966
1967
        if reference is not None:
            self.pandas_categorical = reference.pandas_categorical
            categorical_feature = reference.categorical_feature
1968
1969
1970
1971
1972
1973
1974
        if isinstance(data, pd_DataFrame):
            data, feature_name, categorical_feature, self.pandas_categorical = _data_from_pandas(
                data=data,
                feature_name=feature_name,
                categorical_feature=categorical_feature,
                pandas_categorical=self.pandas_categorical
            )
Guolin Ke's avatar
Guolin Ke committed
1975

1976
        # process for args
wxchan's avatar
wxchan committed
1977
        params = {} if params is None else params
1978
        args_names = inspect.signature(self.__class__._lazy_init).parameters.keys()
1979
        for key in params.keys():
1980
            if key in args_names:
1981
1982
                _log_warning(f'{key} keyword has been found in `params` and will be ignored.\n'
                             f'Please use {key} argument of the Dataset constructor to pass this parameter.')
1983
        # get categorical features
1984
        if isinstance(categorical_feature, list):
1985
1986
            categorical_indices = set()
            feature_dict = {}
1987
            if isinstance(feature_name, list):
1988
1989
                feature_dict = {name: i for i, name in enumerate(feature_name)}
            for name in categorical_feature:
1990
                if isinstance(name, str) and name in feature_dict:
1991
                    categorical_indices.add(feature_dict[name])
1992
                elif isinstance(name, int):
1993
1994
                    categorical_indices.add(name)
                else:
1995
                    raise TypeError(f"Wrong type({type(name).__name__}) or unknown name({name}) in categorical_feature")
1996
            if categorical_indices:
1997
1998
                for cat_alias in _ConfigAliases.get("categorical_feature"):
                    if cat_alias in params:
1999
                        # If the params[cat_alias] is equal to categorical_indices, do not report the warning.
2000
                        if not (isinstance(params[cat_alias], list) and set(params[cat_alias]) == categorical_indices):
2001
                            _log_warning(f'{cat_alias} in param dict is overridden.')
2002
                        params.pop(cat_alias, None)
2003
                params['categorical_column'] = sorted(categorical_indices)
2004

2005
        params_str = _param_dict_to_str(params)
2006
        self.params = params
2007
        # process for reference dataset
wxchan's avatar
wxchan committed
2008
        ref_dataset = None
wxchan's avatar
wxchan committed
2009
        if isinstance(reference, Dataset):
2010
            ref_dataset = reference.construct()._handle
wxchan's avatar
wxchan committed
2011
2012
        elif reference is not None:
            raise TypeError('Reference dataset should be None or dataset instance')
2013
        # start construct data
2014
        if isinstance(data, (str, Path)):
2015
            self._handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
2016
            _safe_call(_LIB.LGBM_DatasetCreateFromFile(
2017
2018
                _c_str(str(data)),
                _c_str(params_str),
wxchan's avatar
wxchan committed
2019
                ref_dataset,
2020
                ctypes.byref(self._handle)))
wxchan's avatar
wxchan committed
2021
2022
        elif isinstance(data, scipy.sparse.csr_matrix):
            self.__init_from_csr(data, params_str, ref_dataset)
Guolin Ke's avatar
Guolin Ke committed
2023
2024
        elif isinstance(data, scipy.sparse.csc_matrix):
            self.__init_from_csc(data, params_str, ref_dataset)
wxchan's avatar
wxchan committed
2025
2026
        elif isinstance(data, np.ndarray):
            self.__init_from_np2d(data, params_str, ref_dataset)
2027
2028
2029
        elif _is_pyarrow_table(data):
            self.__init_from_pyarrow_table(data, params_str, ref_dataset)
            feature_name = data.column_names
2030
        elif isinstance(data, list) and len(data) > 0:
2031
            if _is_list_of_numpy_arrays(data):
2032
                self.__init_from_list_np2d(data, params_str, ref_dataset)
2033
            elif _is_list_of_sequences(data):
2034
2035
2036
2037
2038
                self.__init_from_seqs(data, ref_dataset)
            else:
                raise TypeError('Data list can only be of ndarray or Sequence')
        elif isinstance(data, Sequence):
            self.__init_from_seqs([data], ref_dataset)
2039
        elif isinstance(data, dt_DataTable):
2040
            self.__init_from_np2d(data.to_numpy(), params_str, ref_dataset)
wxchan's avatar
wxchan committed
2041
2042
2043
2044
        else:
            try:
                csr = scipy.sparse.csr_matrix(data)
                self.__init_from_csr(csr, params_str, ref_dataset)
2045
2046
            except BaseException as err:
                raise TypeError(f'Cannot initialize Dataset from {type(data).__name__}') from err
wxchan's avatar
wxchan committed
2047
2048
2049
        if label is not None:
            self.set_label(label)
        if self.get_label() is None:
2050
            raise ValueError("Label should not be None")
wxchan's avatar
wxchan committed
2051
2052
2053
2054
        if weight is not None:
            self.set_weight(weight)
        if group is not None:
            self.set_group(group)
2055
2056
        if position is not None:
            self.set_position(position)
2057
2058
        if isinstance(predictor, _InnerPredictor):
            if self._predictor is None and init_score is not None:
2059
                _log_warning("The init_score will be overridden by the prediction of init_model.")
2060
2061
2062
2063
2064
            self._set_init_score_by_predictor(
                predictor=predictor,
                data=data,
                used_indices=None
            )
2065
2066
        elif init_score is not None:
            self.set_init_score(init_score)
Guolin Ke's avatar
Guolin Ke committed
2067
        elif predictor is not None:
2068
            raise TypeError(f'Wrong predictor type {type(predictor).__name__}')
Guolin Ke's avatar
Guolin Ke committed
2069
        # set feature names
Nikita Titov's avatar
Nikita Titov committed
2070
        return self.set_feature_name(feature_name)
wxchan's avatar
wxchan committed
2071

2072
2073
    @staticmethod
    def _yield_row_from_seqlist(seqs: List[Sequence], indices: Iterable[int]):
2074
2075
2076
2077
2078
2079
2080
2081
2082
2083
2084
2085
2086
2087
2088
2089
2090
2091
2092
2093
2094
2095
2096
2097
2098
        offset = 0
        seq_id = 0
        seq = seqs[seq_id]
        for row_id in indices:
            assert row_id >= offset, "sample indices are expected to be monotonic"
            while row_id >= offset + len(seq):
                offset += len(seq)
                seq_id += 1
                seq = seqs[seq_id]
            id_in_seq = row_id - offset
            row = seq[id_in_seq]
            yield row if row.flags['OWNDATA'] else row.copy()

    def __sample(self, seqs: List[Sequence], total_nrow: int) -> Tuple[List[np.ndarray], List[np.ndarray]]:
        """Sample data from seqs.

        Mimics behavior in c_api.cpp:LGBM_DatasetCreateFromMats()

        Returns
        -------
            sampled_rows, sampled_row_indices
        """
        indices = self._create_sample_indices(total_nrow)

        # Select sampled rows, transpose to column order.
2099
        sampled = np.array(list(self._yield_row_from_seqlist(seqs, indices)))
2100
2101
2102
2103
2104
2105
2106
2107
2108
2109
2110
2111
2112
2113
2114
        sampled = sampled.T

        filtered = []
        filtered_idx = []
        sampled_row_range = np.arange(len(indices), dtype=np.int32)
        for col in sampled:
            col_predicate = (np.abs(col) > ZERO_THRESHOLD) | np.isnan(col)
            filtered_col = col[col_predicate]
            filtered_row_idx = sampled_row_range[col_predicate]

            filtered.append(filtered_col)
            filtered_idx.append(filtered_row_idx)

        return filtered, filtered_idx

2115
2116
2117
    def __init_from_seqs(
        self,
        seqs: List[Sequence],
2118
        ref_dataset: Optional[_DatasetHandle]
2119
    ) -> "Dataset":
2120
2121
2122
2123
2124
2125
2126
2127
2128
2129
2130
2131
2132
2133
        """
        Initialize data from list of Sequence objects.

        Sequence: Generic Data Access Object
            Supports random access and access by batch if properly defined by user

        Data scheme uniformity are trusted, not checked
        """
        total_nrow = sum(len(seq) for seq in seqs)

        # create validation dataset from ref_dataset
        if ref_dataset is not None:
            self._init_from_ref_dataset(total_nrow, ref_dataset)
        else:
2134
            param_str = _param_dict_to_str(self.get_params())
2135
2136
2137
2138
2139
2140
2141
2142
2143
2144
2145
2146
2147
            sample_cnt = _get_sample_count(total_nrow, param_str)

            sample_data, col_indices = self.__sample(seqs, total_nrow)
            self._init_from_sample(sample_data, col_indices, sample_cnt, total_nrow)

        for seq in seqs:
            nrow = len(seq)
            batch_size = getattr(seq, 'batch_size', None) or Sequence.batch_size
            for start in range(0, nrow, batch_size):
                end = min(start + batch_size, nrow)
                self._push_rows(seq[start:end])
        return self

2148
2149
2150
2151
2152
2153
    def __init_from_np2d(
        self,
        mat: np.ndarray,
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
2154
        """Initialize data from a 2-D numpy matrix."""
wxchan's avatar
wxchan committed
2155
2156
2157
        if len(mat.shape) != 2:
            raise ValueError('Input numpy.ndarray must be 2 dimensional')

2158
        self._handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
2159
2160
        if mat.dtype == np.float32 or mat.dtype == np.float64:
            data = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
2161
        else:  # change non-float data to float data, need to copy
wxchan's avatar
wxchan committed
2162
2163
            data = np.array(mat.reshape(mat.size), dtype=np.float32)

2164
        ptr_data, type_ptr_data, _ = _c_float_array(data)
wxchan's avatar
wxchan committed
2165
2166
        _safe_call(_LIB.LGBM_DatasetCreateFromMat(
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
2167
            ctypes.c_int(type_ptr_data),
2168
2169
            ctypes.c_int32(mat.shape[0]),
            ctypes.c_int32(mat.shape[1]),
2170
            ctypes.c_int(_C_API_IS_ROW_MAJOR),
2171
            _c_str(params_str),
wxchan's avatar
wxchan committed
2172
            ref_dataset,
2173
            ctypes.byref(self._handle)))
Nikita Titov's avatar
Nikita Titov committed
2174
        return self
wxchan's avatar
wxchan committed
2175

2176
2177
2178
2179
2180
2181
    def __init_from_list_np2d(
        self,
        mats: List[np.ndarray],
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
2182
        """Initialize data from a list of 2-D numpy matrices."""
2183
        ncol = mats[0].shape[1]
2184
        nrow = np.empty((len(mats),), np.int32)
2185
        ptr_data: _ctypes_float_array
2186
2187
2188
2189
2190
2191
        if mats[0].dtype == np.float64:
            ptr_data = (ctypes.POINTER(ctypes.c_double) * len(mats))()
        else:
            ptr_data = (ctypes.POINTER(ctypes.c_float) * len(mats))()

        holders = []
2192
        type_ptr_data = -1
2193
2194
2195
2196
2197
2198
2199
2200
2201
2202
2203
2204

        for i, mat in enumerate(mats):
            if len(mat.shape) != 2:
                raise ValueError('Input numpy.ndarray must be 2 dimensional')

            if mat.shape[1] != ncol:
                raise ValueError('Input arrays must have same number of columns')

            nrow[i] = mat.shape[0]

            if mat.dtype == np.float32 or mat.dtype == np.float64:
                mats[i] = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
2205
            else:  # change non-float data to float data, need to copy
2206
2207
                mats[i] = np.array(mat.reshape(mat.size), dtype=np.float32)

2208
            chunk_ptr_data, chunk_type_ptr_data, holder = _c_float_array(mats[i])
2209
            if type_ptr_data != -1 and chunk_type_ptr_data != type_ptr_data:
2210
2211
2212
2213
2214
                raise ValueError('Input chunks must have same type')
            ptr_data[i] = chunk_ptr_data
            type_ptr_data = chunk_type_ptr_data
            holders.append(holder)

2215
        self._handle = ctypes.c_void_p()
2216
        _safe_call(_LIB.LGBM_DatasetCreateFromMats(
2217
            ctypes.c_int32(len(mats)),
2218
2219
2220
            ctypes.cast(ptr_data, ctypes.POINTER(ctypes.POINTER(ctypes.c_double))),
            ctypes.c_int(type_ptr_data),
            nrow.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
2221
            ctypes.c_int32(ncol),
2222
            ctypes.c_int(_C_API_IS_ROW_MAJOR),
2223
            _c_str(params_str),
2224
            ref_dataset,
2225
            ctypes.byref(self._handle)))
Nikita Titov's avatar
Nikita Titov committed
2226
        return self
2227

2228
2229
2230
2231
2232
2233
    def __init_from_csr(
        self,
        csr: scipy.sparse.csr_matrix,
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
2234
        """Initialize data from a CSR matrix."""
wxchan's avatar
wxchan committed
2235
        if len(csr.indices) != len(csr.data):
2236
            raise ValueError(f'Length mismatch: {len(csr.indices)} vs {len(csr.data)}')
2237
        self._handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
2238

2239
2240
        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csr.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csr.data)
wxchan's avatar
wxchan committed
2241

2242
        assert csr.shape[1] <= _MAX_INT32
2243
        csr_indices = csr.indices.astype(np.int32, copy=False)
2244

wxchan's avatar
wxchan committed
2245
2246
        _safe_call(_LIB.LGBM_DatasetCreateFromCSR(
            ptr_indptr,
Guolin Ke's avatar
Guolin Ke committed
2247
            ctypes.c_int(type_ptr_indptr),
2248
            csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
wxchan's avatar
wxchan committed
2249
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
2250
2251
2252
2253
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csr.indptr)),
            ctypes.c_int64(len(csr.data)),
            ctypes.c_int64(csr.shape[1]),
2254
            _c_str(params_str),
wxchan's avatar
wxchan committed
2255
            ref_dataset,
2256
            ctypes.byref(self._handle)))
Nikita Titov's avatar
Nikita Titov committed
2257
        return self
wxchan's avatar
wxchan committed
2258

2259
2260
2261
2262
2263
2264
    def __init_from_csc(
        self,
        csc: scipy.sparse.csc_matrix,
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
2265
        """Initialize data from a CSC matrix."""
Guolin Ke's avatar
Guolin Ke committed
2266
        if len(csc.indices) != len(csc.data):
2267
            raise ValueError(f'Length mismatch: {len(csc.indices)} vs {len(csc.data)}')
2268
        self._handle = ctypes.c_void_p()
Guolin Ke's avatar
Guolin Ke committed
2269

2270
2271
        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csc.data)
Guolin Ke's avatar
Guolin Ke committed
2272

2273
        assert csc.shape[0] <= _MAX_INT32
2274
        csc_indices = csc.indices.astype(np.int32, copy=False)
2275

Guolin Ke's avatar
Guolin Ke committed
2276
2277
        _safe_call(_LIB.LGBM_DatasetCreateFromCSC(
            ptr_indptr,
Guolin Ke's avatar
Guolin Ke committed
2278
            ctypes.c_int(type_ptr_indptr),
2279
            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
Guolin Ke's avatar
Guolin Ke committed
2280
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
2281
2282
2283
2284
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
2285
            _c_str(params_str),
Guolin Ke's avatar
Guolin Ke committed
2286
            ref_dataset,
2287
            ctypes.byref(self._handle)))
Nikita Titov's avatar
Nikita Titov committed
2288
        return self
Guolin Ke's avatar
Guolin Ke committed
2289

2290
2291
2292
2293
2294
2295
2296
2297
2298
2299
2300
2301
2302
2303
2304
2305
2306
2307
2308
2309
2310
2311
2312
2313
2314
2315
    def __init_from_pyarrow_table(
        self,
        table: pa_Table,
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
        """Initialize data from a PyArrow table."""
        if not PYARROW_INSTALLED:
            raise LightGBMError("Cannot init dataframe from Arrow without `pyarrow` installed.")

        # Check that the input is valid: we only handle numbers (for now)
        if not all(arrow_is_integer(t) or arrow_is_floating(t) for t in table.schema.types):
            raise ValueError("Arrow table may only have integer or floating point datatypes")

        # Export Arrow table to C
        c_array = _export_arrow_to_c(table)
        self._handle = ctypes.c_void_p()
        _safe_call(_LIB.LGBM_DatasetCreateFromArrow(
            ctypes.c_int64(c_array.n_chunks),
            ctypes.c_void_p(c_array.chunks_ptr),
            ctypes.c_void_p(c_array.schema_ptr),
            _c_str(params_str),
            ref_dataset,
            ctypes.byref(self._handle)))
        return self

2316
    @staticmethod
2317
    def _compare_params_for_warning(
2318
2319
        params: Dict[str, Any],
        other_params: Dict[str, Any],
2320
2321
2322
        ignore_keys: Set[str]
    ) -> bool:
        """Compare two dictionaries with params ignoring some keys.
2323

2324
2325
2326
2327
        It is only for the warning purpose.

        Parameters
        ----------
2328
        params : dict
2329
            One dictionary with parameters to compare.
2330
        other_params : dict
2331
2332
2333
            Another dictionary with parameters to compare.
        ignore_keys : set
            Keys that should be ignored during comparing two dictionaries.
2334
2335
2336

        Returns
        -------
2337
2338
        compare_result : bool
          Returns whether two dictionaries with params are equal.
2339
2340
2341
2342
2343
2344
2345
2346
2347
2348
2349
        """
        for k in other_params:
            if k not in ignore_keys:
                if k not in params or params[k] != other_params[k]:
                    return False
        for k in params:
            if k not in ignore_keys:
                if k not in other_params or params[k] != other_params[k]:
                    return False
        return True

2350
    def construct(self) -> "Dataset":
2351
2352
2353
2354
2355
        """Lazy init.

        Returns
        -------
        self : Dataset
Nikita Titov's avatar
Nikita Titov committed
2356
            Constructed Dataset object.
2357
        """
2358
        if self._handle is None:
wxchan's avatar
wxchan committed
2359
            if self.reference is not None:
2360
                reference_params = self.reference.get_params()
2361
2362
                params = self.get_params()
                if params != reference_params:
2363
2364
2365
2366
2367
                    if not self._compare_params_for_warning(
                        params=params,
                        other_params=reference_params,
                        ignore_keys=_ConfigAliases.get("categorical_feature")
                    ):
2368
                        _log_warning('Overriding the parameters from Reference Dataset.')
2369
                    self._update_params(reference_params)
wxchan's avatar
wxchan committed
2370
                if self.used_indices is None:
2371
                    # create valid
2372
                    self._lazy_init(data=self.data, label=self.label, reference=self.reference,
2373
                                    weight=self.weight, group=self.group, position=self.position,
2374
                                    init_score=self.init_score, predictor=self._predictor,
2375
                                    feature_name=self.feature_name, categorical_feature='auto', params=self.params)
wxchan's avatar
wxchan committed
2376
                else:
2377
                    # construct subset
2378
                    used_indices = _list_to_1d_numpy(self.used_indices, dtype=np.int32, name='used_indices')
2379
                    assert used_indices.flags.c_contiguous
Guolin Ke's avatar
Guolin Ke committed
2380
                    if self.reference.group is not None:
2381
                        group_info = np.array(self.reference.group).astype(np.int32, copy=False)
2382
                        _, self.group = np.unique(np.repeat(range(len(group_info)), repeats=group_info)[self.used_indices],
2383
                                                  return_counts=True)
2384
                    self._handle = ctypes.c_void_p()
2385
                    params_str = _param_dict_to_str(self.params)
wxchan's avatar
wxchan committed
2386
                    _safe_call(_LIB.LGBM_DatasetGetSubset(
2387
                        self.reference.construct()._handle,
wxchan's avatar
wxchan committed
2388
                        used_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
2389
                        ctypes.c_int32(used_indices.shape[0]),
2390
                        _c_str(params_str),
2391
                        ctypes.byref(self._handle)))
Guolin Ke's avatar
Guolin Ke committed
2392
2393
                    if not self.free_raw_data:
                        self.get_data()
Guolin Ke's avatar
Guolin Ke committed
2394
2395
                    if self.group is not None:
                        self.set_group(self.group)
2396
2397
                    if self.position is not None:
                        self.set_position(self.position)
wxchan's avatar
wxchan committed
2398
2399
                    if self.get_label() is None:
                        raise ValueError("Label should not be None.")
Guolin Ke's avatar
Guolin Ke committed
2400
2401
                    if isinstance(self._predictor, _InnerPredictor) and self._predictor is not self.reference._predictor:
                        self.get_data()
2402
2403
2404
2405
2406
                        self._set_init_score_by_predictor(
                            predictor=self._predictor,
                            data=self.data,
                            used_indices=used_indices
                        )
wxchan's avatar
wxchan committed
2407
            else:
2408
                # create train
2409
                self._lazy_init(data=self.data, label=self.label, reference=None,
2410
2411
                                weight=self.weight, group=self.group,
                                init_score=self.init_score, predictor=self._predictor,
2412
2413
                                feature_name=self.feature_name, categorical_feature=self.categorical_feature,
                                params=self.params, position=self.position)
wxchan's avatar
wxchan committed
2414
2415
            if self.free_raw_data:
                self.data = None
2416
            self.feature_name = self.get_feature_name()
wxchan's avatar
wxchan committed
2417
        return self
wxchan's avatar
wxchan committed
2418

2419
2420
    def create_valid(
        self,
2421
        data: _LGBM_TrainDataType,
2422
        label: Optional[_LGBM_LabelType] = None,
2423
2424
2425
        weight: Optional[_LGBM_WeightType] = None,
        group: Optional[_LGBM_GroupType] = None,
        init_score: Optional[_LGBM_InitScoreType] = None,
2426
2427
        params: Optional[Dict[str, Any]] = None,
        position: Optional[_LGBM_PositionType] = None
2428
    ) -> "Dataset":
2429
        """Create validation data align with current Dataset.
wxchan's avatar
wxchan committed
2430
2431
2432

        Parameters
        ----------
2433
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array
wxchan's avatar
wxchan committed
2434
            Data source of Dataset.
2435
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM) or a LightGBM Dataset binary file.
2436
        label : list, numpy 1-D array, pandas Series / one-column DataFrame, pyarrow Array, pyarrow ChunkedArray or None, optional (default=None)
2437
            Label of the data.
2438
        weight : list, numpy 1-D array, pandas Series, pyarrow Array, pyarrow ChunkedArray or None, optional (default=None)
2439
            Weight for each instance. Weights should be non-negative.
2440
        group : list, numpy 1-D array, pandas Series, pyarrow Array, pyarrow ChunkedArray or None, optional (default=None)
2441
2442
2443
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
2444
2445
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
2446
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), pyarrow Array, pyarrow ChunkedArray, pyarrow Table (for multi-class task) or None, optional (default=None)
2447
            Init score for Dataset.
Nikita Titov's avatar
Nikita Titov committed
2448
        params : dict or None, optional (default=None)
2449
            Other parameters for validation Dataset.
2450
2451
        position : numpy 1-D array, pandas Series or None, optional (default=None)
            Position of items used in unbiased learning-to-rank task.
2452
2453
2454

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2455
2456
        valid : Dataset
            Validation Dataset with reference to self.
wxchan's avatar
wxchan committed
2457
        """
2458
        ret = Dataset(data, label=label, reference=self,
2459
                      weight=weight, group=group, position=position, init_score=init_score,
2460
                      params=params, free_raw_data=self.free_raw_data)
wxchan's avatar
wxchan committed
2461
        ret._predictor = self._predictor
2462
        ret.pandas_categorical = self.pandas_categorical
wxchan's avatar
wxchan committed
2463
        return ret
wxchan's avatar
wxchan committed
2464

2465
2466
2467
2468
2469
    def subset(
        self,
        used_indices: List[int],
        params: Optional[Dict[str, Any]] = None
    ) -> "Dataset":
2470
        """Get subset of current Dataset.
wxchan's avatar
wxchan committed
2471
2472
2473
2474

        Parameters
        ----------
        used_indices : list of int
2475
            Indices used to create the subset.
Nikita Titov's avatar
Nikita Titov committed
2476
        params : dict or None, optional (default=None)
2477
            These parameters will be passed to Dataset constructor.
2478
2479
2480
2481
2482

        Returns
        -------
        subset : Dataset
            Subset of the current Dataset.
wxchan's avatar
wxchan committed
2483
        """
wxchan's avatar
wxchan committed
2484
2485
        if params is None:
            params = self.params
wxchan's avatar
wxchan committed
2486
        ret = Dataset(None, reference=self, feature_name=self.feature_name,
2487
2488
                      categorical_feature=self.categorical_feature, params=params,
                      free_raw_data=self.free_raw_data)
wxchan's avatar
wxchan committed
2489
        ret._predictor = self._predictor
2490
        ret.pandas_categorical = self.pandas_categorical
2491
        ret.used_indices = sorted(used_indices)
wxchan's avatar
wxchan committed
2492
2493
        return ret

2494
    def save_binary(self, filename: Union[str, Path]) -> "Dataset":
2495
        """Save Dataset to a binary file.
wxchan's avatar
wxchan committed
2496

2497
2498
2499
2500
2501
        .. note::

            Please note that `init_score` is not saved in binary file.
            If you need it, please set it again after loading Dataset.

wxchan's avatar
wxchan committed
2502
2503
        Parameters
        ----------
2504
        filename : str or pathlib.Path
wxchan's avatar
wxchan committed
2505
            Name of the output file.
Nikita Titov's avatar
Nikita Titov committed
2506
2507
2508
2509
2510

        Returns
        -------
        self : Dataset
            Returns self.
wxchan's avatar
wxchan committed
2511
2512
        """
        _safe_call(_LIB.LGBM_DatasetSaveBinary(
2513
            self.construct()._handle,
2514
            _c_str(str(filename))))
Nikita Titov's avatar
Nikita Titov committed
2515
        return self
wxchan's avatar
wxchan committed
2516

2517
    def _update_params(self, params: Optional[Dict[str, Any]]) -> "Dataset":
2518
2519
        if not params:
            return self
2520
        params = deepcopy(params)
2521
2522
2523
2524
2525

        def update():
            if not self.params:
                self.params = params
            else:
2526
                self._params_back_up = deepcopy(self.params)
2527
2528
                self.params.update(params)

2529
        if self._handle is None:
2530
2531
2532
            update()
        elif params is not None:
            ret = _LIB.LGBM_DatasetUpdateParamChecking(
2533
2534
                _c_str(_param_dict_to_str(self.params)),
                _c_str(_param_dict_to_str(params)))
2535
2536
2537
2538
2539
2540
            if ret != 0:
                # could be updated if data is not freed
                if self.data is not None:
                    update()
                    self._free_handle()
                else:
2541
                    raise LightGBMError(_LIB.LGBM_GetLastError().decode('utf-8'))
Nikita Titov's avatar
Nikita Titov committed
2542
        return self
wxchan's avatar
wxchan committed
2543

2544
    def _reverse_update_params(self) -> "Dataset":
2545
        if self._handle is None:
2546
2547
            self.params = deepcopy(self._params_back_up)
            self._params_back_up = None
Nikita Titov's avatar
Nikita Titov committed
2548
        return self
2549

2550
2551
2552
    def set_field(
        self,
        field_name: str,
2553
        data: Optional[Union[List[List[float]], List[List[int]], List[float], List[int], np.ndarray, pd_Series, pd_DataFrame, pa_Table, pa_Array, pa_ChunkedArray]]
2554
    ) -> "Dataset":
wxchan's avatar
wxchan committed
2555
        """Set property into the Dataset.
wxchan's avatar
wxchan committed
2556
2557
2558

        Parameters
        ----------
2559
        field_name : str
2560
            The field name of the information.
2561
        data : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), pyarrow Array, pyarrow ChunkedArray or None
2562
            The data to be set.
Nikita Titov's avatar
Nikita Titov committed
2563
2564
2565
2566
2567

        Returns
        -------
        self : Dataset
            Dataset with set property.
wxchan's avatar
wxchan committed
2568
        """
2569
        if self._handle is None:
2570
            raise Exception(f"Cannot set {field_name} before construct dataset")
wxchan's avatar
wxchan committed
2571
        if data is None:
2572
            # set to None
wxchan's avatar
wxchan committed
2573
            _safe_call(_LIB.LGBM_DatasetSetField(
2574
                self._handle,
2575
                _c_str(field_name),
wxchan's avatar
wxchan committed
2576
                None,
Guolin Ke's avatar
Guolin Ke committed
2577
                ctypes.c_int(0),
2578
                ctypes.c_int(_FIELD_TYPE_MAPPER[field_name])))
Nikita Titov's avatar
Nikita Titov committed
2579
            return self
2580
2581

        # If the data is a arrow data, we can just pass it to C
2582
2583
2584
2585
2586
2587
2588
2589
2590
2591
        if _is_pyarrow_array(data) or _is_pyarrow_table(data):
            # If a table is being passed, we concatenate the columns. This is only valid for
            # 'init_score'.
            if _is_pyarrow_table(data):
                if field_name != "init_score":
                    raise ValueError(f"pyarrow tables are not supported for field '{field_name}'")
                data = pa_chunked_array([
                    chunk for array in data.columns for chunk in array.chunks  # type: ignore
                ])

2592
2593
2594
2595
2596
2597
2598
2599
2600
2601
2602
            c_array = _export_arrow_to_c(data)
            _safe_call(_LIB.LGBM_DatasetSetFieldFromArrow(
                self._handle,
                _c_str(field_name),
                ctypes.c_int64(c_array.n_chunks),
                ctypes.c_void_p(c_array.chunks_ptr),
                ctypes.c_void_p(c_array.schema_ptr),
            ))
            self.version += 1
            return self

2603
        dtype: "np.typing.DTypeLike"
2604
        if field_name == 'init_score':
Guolin Ke's avatar
Guolin Ke committed
2605
            dtype = np.float64
2606
            if _is_1d_collection(data):
2607
                data = _list_to_1d_numpy(data, dtype=dtype, name=field_name)
2608
            elif _is_2d_collection(data):
2609
                data = _data_to_2d_numpy(data, dtype=dtype, name=field_name)
2610
2611
2612
2613
2614
2615
2616
                data = data.ravel(order='F')
            else:
                raise TypeError(
                    'init_score must be list, numpy 1-D array or pandas Series.\n'
                    'In multiclass classification init_score can also be a list of lists, numpy 2-D array or pandas DataFrame.'
                )
        else:
2617
            dtype = np.int32 if (field_name == 'group' or field_name == 'position') else np.float32
2618
            data = _list_to_1d_numpy(data, dtype=dtype, name=field_name)
2619

2620
        ptr_data: Union[_ctypes_float_ptr, _ctypes_int_ptr]
2621
        if data.dtype == np.float32 or data.dtype == np.float64:
2622
            ptr_data, type_data, _ = _c_float_array(data)
wxchan's avatar
wxchan committed
2623
        elif data.dtype == np.int32:
2624
            ptr_data, type_data, _ = _c_int_array(data)
wxchan's avatar
wxchan committed
2625
        else:
2626
            raise TypeError(f"Expected np.float32/64 or np.int32, met type({data.dtype})")
2627
        if type_data != _FIELD_TYPE_MAPPER[field_name]:
2628
            raise TypeError("Input type error for set_field")
wxchan's avatar
wxchan committed
2629
        _safe_call(_LIB.LGBM_DatasetSetField(
2630
            self._handle,
2631
            _c_str(field_name),
wxchan's avatar
wxchan committed
2632
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
2633
2634
            ctypes.c_int(len(data)),
            ctypes.c_int(type_data)))
2635
        self.version += 1
Nikita Titov's avatar
Nikita Titov committed
2636
        return self
wxchan's avatar
wxchan committed
2637

2638
    def get_field(self, field_name: str) -> Optional[np.ndarray]:
wxchan's avatar
wxchan committed
2639
        """Get property from the Dataset.
wxchan's avatar
wxchan committed
2640

2641
2642
2643
2644
2645
2646
        Can only be run on a constructed Dataset.

        Unlike ``get_group()``, ``get_init_score()``, ``get_label()``, ``get_position()``, and ``get_weight()``,
        this method ignores any raw data passed into ``lgb.Dataset()`` on the Python side, and will only read
        data from the constructed C++ ``Dataset`` object.

wxchan's avatar
wxchan committed
2647
2648
        Parameters
        ----------
2649
        field_name : str
2650
            The field name of the information.
wxchan's avatar
wxchan committed
2651
2652
2653

        Returns
        -------
2654
        info : numpy array or None
2655
            A numpy array with information from the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2656
        """
2657
        if self._handle is None:
2658
            raise Exception(f"Cannot get {field_name} before construct Dataset")
2659
2660
        tmp_out_len = ctypes.c_int(0)
        out_type = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2661
2662
        ret = ctypes.POINTER(ctypes.c_void_p)()
        _safe_call(_LIB.LGBM_DatasetGetField(
2663
            self._handle,
2664
            _c_str(field_name),
wxchan's avatar
wxchan committed
2665
2666
2667
            ctypes.byref(tmp_out_len),
            ctypes.byref(ret),
            ctypes.byref(out_type)))
2668
        if out_type.value != _FIELD_TYPE_MAPPER[field_name]:
wxchan's avatar
wxchan committed
2669
2670
2671
            raise TypeError("Return type error for get_field")
        if tmp_out_len.value == 0:
            return None
2672
        if out_type.value == _C_API_DTYPE_INT32:
2673
2674
2675
2676
            arr = _cint32_array_to_numpy(
                cptr=ctypes.cast(ret, ctypes.POINTER(ctypes.c_int32)),
                length=tmp_out_len.value
            )
2677
        elif out_type.value == _C_API_DTYPE_FLOAT32:
2678
2679
2680
2681
            arr = _cfloat32_array_to_numpy(
                cptr=ctypes.cast(ret, ctypes.POINTER(ctypes.c_float)),
                length=tmp_out_len.value
            )
2682
        elif out_type.value == _C_API_DTYPE_FLOAT64:
2683
2684
2685
2686
            arr = _cfloat64_array_to_numpy(
                cptr=ctypes.cast(ret, ctypes.POINTER(ctypes.c_double)),
                length=tmp_out_len.value
            )
2687
        else:
wxchan's avatar
wxchan committed
2688
            raise TypeError("Unknown type")
2689
2690
2691
2692
2693
2694
        if field_name == 'init_score':
            num_data = self.num_data()
            num_classes = arr.size // num_data
            if num_classes > 1:
                arr = arr.reshape((num_data, num_classes), order='F')
        return arr
Guolin Ke's avatar
Guolin Ke committed
2695

2696
2697
    def set_categorical_feature(
        self,
2698
        categorical_feature: _LGBM_CategoricalFeatureConfiguration
2699
    ) -> "Dataset":
2700
        """Set categorical features.
2701
2702
2703

        Parameters
        ----------
2704
        categorical_feature : list of str or int, or 'auto'
2705
            Names or indices of categorical features.
Nikita Titov's avatar
Nikita Titov committed
2706
2707
2708
2709
2710

        Returns
        -------
        self : Dataset
            Dataset with set categorical features.
2711
2712
        """
        if self.categorical_feature == categorical_feature:
Nikita Titov's avatar
Nikita Titov committed
2713
            return self
2714
        if self.data is not None:
2715
2716
            if self.categorical_feature is None:
                self.categorical_feature = categorical_feature
Nikita Titov's avatar
Nikita Titov committed
2717
                return self._free_handle()
2718
            elif categorical_feature == 'auto':
Nikita Titov's avatar
Nikita Titov committed
2719
                return self
2720
            else:
2721
2722
                if self.categorical_feature != 'auto':
                    _log_warning('categorical_feature in Dataset is overridden.\n'
2723
                                 f'New categorical_feature is {list(categorical_feature)}')
2724
                self.categorical_feature = categorical_feature
Nikita Titov's avatar
Nikita Titov committed
2725
                return self._free_handle()
2726
        else:
2727
2728
            raise LightGBMError("Cannot set categorical feature after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
2729

2730
2731
2732
2733
    def _set_predictor(
        self,
        predictor: Optional[_InnerPredictor]
    ) -> "Dataset":
2734
2735
2736
2737
        """Set predictor for continued training.

        It is not recommended for user to call this function.
        Please use init_model argument in engine.train() or engine.cv() instead.
Guolin Ke's avatar
Guolin Ke committed
2738
        """
2739
        if predictor is None and self._predictor is None:
Nikita Titov's avatar
Nikita Titov committed
2740
            return self
2741
2742
2743
        elif isinstance(predictor, _InnerPredictor) and isinstance(self._predictor, _InnerPredictor):
            if (predictor == self._predictor) and (predictor.current_iteration() == self._predictor.current_iteration()):
                return self
2744
        if self._handle is None:
Guolin Ke's avatar
Guolin Ke committed
2745
            self._predictor = predictor
2746
2747
        elif self.data is not None:
            self._predictor = predictor
2748
2749
2750
2751
2752
            self._set_init_score_by_predictor(
                predictor=self._predictor,
                data=self.data,
                used_indices=None
            )
2753
2754
        elif self.used_indices is not None and self.reference is not None and self.reference.data is not None:
            self._predictor = predictor
2755
2756
2757
2758
2759
            self._set_init_score_by_predictor(
                predictor=self._predictor,
                data=self.reference.data,
                used_indices=self.used_indices
            )
Guolin Ke's avatar
Guolin Ke committed
2760
        else:
2761
2762
            raise LightGBMError("Cannot set predictor after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
2763
        return self
Guolin Ke's avatar
Guolin Ke committed
2764

2765
    def set_reference(self, reference: "Dataset") -> "Dataset":
2766
        """Set reference Dataset.
Guolin Ke's avatar
Guolin Ke committed
2767
2768
2769
2770

        Parameters
        ----------
        reference : Dataset
2771
            Reference that is used as a template to construct the current Dataset.
Nikita Titov's avatar
Nikita Titov committed
2772
2773
2774
2775
2776

        Returns
        -------
        self : Dataset
            Dataset with set reference.
Guolin Ke's avatar
Guolin Ke committed
2777
        """
2778
2779
2780
        self.set_categorical_feature(reference.categorical_feature) \
            .set_feature_name(reference.feature_name) \
            ._set_predictor(reference._predictor)
2781
        # we're done if self and reference share a common upstream reference
2782
        if self.get_ref_chain().intersection(reference.get_ref_chain()):
Nikita Titov's avatar
Nikita Titov committed
2783
            return self
Guolin Ke's avatar
Guolin Ke committed
2784
2785
        if self.data is not None:
            self.reference = reference
Nikita Titov's avatar
Nikita Titov committed
2786
            return self._free_handle()
Guolin Ke's avatar
Guolin Ke committed
2787
        else:
2788
2789
            raise LightGBMError("Cannot set reference after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
Guolin Ke's avatar
Guolin Ke committed
2790

2791
    def set_feature_name(self, feature_name: _LGBM_FeatureNameConfiguration) -> "Dataset":
2792
        """Set feature name.
Guolin Ke's avatar
Guolin Ke committed
2793
2794
2795

        Parameters
        ----------
2796
        feature_name : list of str
2797
            Feature names.
Nikita Titov's avatar
Nikita Titov committed
2798
2799
2800
2801
2802

        Returns
        -------
        self : Dataset
            Dataset with set feature name.
Guolin Ke's avatar
Guolin Ke committed
2803
        """
2804
2805
        if feature_name != 'auto':
            self.feature_name = feature_name
2806
        if self._handle is not None and feature_name is not None and feature_name != 'auto':
wxchan's avatar
wxchan committed
2807
            if len(feature_name) != self.num_feature():
2808
                raise ValueError(f"Length of feature_name({len(feature_name)}) and num_feature({self.num_feature()}) don't match")
2809
            c_feature_name = [_c_str(name) for name in feature_name]
wxchan's avatar
wxchan committed
2810
            _safe_call(_LIB.LGBM_DatasetSetFeatureNames(
2811
                self._handle,
2812
                _c_array(ctypes.c_char_p, c_feature_name),
Guolin Ke's avatar
Guolin Ke committed
2813
                ctypes.c_int(len(feature_name))))
Nikita Titov's avatar
Nikita Titov committed
2814
        return self
Guolin Ke's avatar
Guolin Ke committed
2815

2816
    def set_label(self, label: Optional[_LGBM_LabelType]) -> "Dataset":
2817
        """Set label of Dataset.
Guolin Ke's avatar
Guolin Ke committed
2818
2819
2820

        Parameters
        ----------
2821
        label : list, numpy 1-D array, pandas Series / one-column DataFrame, pyarrow Array, pyarrow ChunkedArray or None
2822
            The label information to be set into Dataset.
Nikita Titov's avatar
Nikita Titov committed
2823
2824
2825
2826
2827

        Returns
        -------
        self : Dataset
            Dataset with set label.
Guolin Ke's avatar
Guolin Ke committed
2828
2829
        """
        self.label = label
2830
        if self._handle is not None:
2831
2832
2833
            if isinstance(label, pd_DataFrame):
                if len(label.columns) > 1:
                    raise ValueError('DataFrame for label cannot have multiple columns')
2834
                label_array = np.ravel(_pandas_to_numpy(label, target_dtype=np.float32))
2835
2836
            elif _is_pyarrow_array(label):
                label_array = label
2837
            else:
2838
                label_array = _list_to_1d_numpy(label, dtype=np.float32, name='label')
2839
            self.set_field('label', label_array)
2840
            self.label = self.get_field('label')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
2841
        return self
Guolin Ke's avatar
Guolin Ke committed
2842

2843
2844
2845
2846
    def set_weight(
        self,
        weight: Optional[_LGBM_WeightType]
    ) -> "Dataset":
2847
        """Set weight of each instance.
Guolin Ke's avatar
Guolin Ke committed
2848
2849
2850

        Parameters
        ----------
2851
        weight : list, numpy 1-D array, pandas Series, pyarrow Array, pyarrow ChunkedArray or None
2852
            Weight to be set for each data point. Weights should be non-negative.
Nikita Titov's avatar
Nikita Titov committed
2853
2854
2855
2856
2857

        Returns
        -------
        self : Dataset
            Dataset with set weight.
Guolin Ke's avatar
Guolin Ke committed
2858
        """
2859
2860
2861
2862
2863
2864
2865
        # Check if the weight contains values other than one
        if weight is not None:
            if _is_pyarrow_array(weight):
                if pa_compute.all(pa_compute.equal(weight, 1)).as_py():
                    weight = None
            elif np.all(weight == 1):
                weight = None
Guolin Ke's avatar
Guolin Ke committed
2866
        self.weight = weight
2867
2868

        # Set field
2869
        if self._handle is not None and weight is not None:
2870
2871
            if not _is_pyarrow_array(weight):
                weight = _list_to_1d_numpy(weight, dtype=np.float32, name='weight')
wxchan's avatar
wxchan committed
2872
            self.set_field('weight', weight)
2873
            self.weight = self.get_field('weight')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
2874
        return self
Guolin Ke's avatar
Guolin Ke committed
2875

2876
2877
2878
2879
    def set_init_score(
        self,
        init_score: Optional[_LGBM_InitScoreType]
    ) -> "Dataset":
2880
        """Set init score of Booster to start from.
Guolin Ke's avatar
Guolin Ke committed
2881
2882
2883

        Parameters
        ----------
2884
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), pyarrow Array, pyarrow ChunkedArray, pyarrow Table (for multi-class task) or None
2885
            Init score for Booster.
Nikita Titov's avatar
Nikita Titov committed
2886
2887
2888
2889
2890

        Returns
        -------
        self : Dataset
            Dataset with set init score.
Guolin Ke's avatar
Guolin Ke committed
2891
2892
        """
        self.init_score = init_score
2893
        if self._handle is not None and init_score is not None:
wxchan's avatar
wxchan committed
2894
            self.set_field('init_score', init_score)
2895
            self.init_score = self.get_field('init_score')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
2896
        return self
Guolin Ke's avatar
Guolin Ke committed
2897

2898
2899
2900
2901
    def set_group(
        self,
        group: Optional[_LGBM_GroupType]
    ) -> "Dataset":
2902
        """Set group size of Dataset (used for ranking).
Guolin Ke's avatar
Guolin Ke committed
2903
2904
2905

        Parameters
        ----------
2906
        group : list, numpy 1-D array, pandas Series, pyarrow Array, pyarrow ChunkedArray or None
2907
2908
2909
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
2910
2911
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
Nikita Titov's avatar
Nikita Titov committed
2912
2913
2914
2915
2916

        Returns
        -------
        self : Dataset
            Dataset with set group.
Guolin Ke's avatar
Guolin Ke committed
2917
2918
        """
        self.group = group
2919
        if self._handle is not None and group is not None:
2920
2921
            if not _is_pyarrow_array(group):
                group = _list_to_1d_numpy(group, dtype=np.int32, name='group')
wxchan's avatar
wxchan committed
2922
            self.set_field('group', group)
2923
2924
2925
2926
            # original values can be modified at cpp side
            constructed_group = self.get_field('group')
            if constructed_group is not None:
                self.group = np.diff(constructed_group)
Nikita Titov's avatar
Nikita Titov committed
2927
        return self
Guolin Ke's avatar
Guolin Ke committed
2928

2929
2930
2931
2932
2933
2934
2935
2936
2937
2938
2939
2940
2941
2942
2943
2944
2945
2946
2947
2948
2949
2950
    def set_position(
        self,
        position: Optional[_LGBM_PositionType]
    ) -> "Dataset":
        """Set position of Dataset (used for ranking).

        Parameters
        ----------
        position : numpy 1-D array, pandas Series or None, optional (default=None)
            Position of items used in unbiased learning-to-rank task.

        Returns
        -------
        self : Dataset
            Dataset with set position.
        """
        self.position = position
        if self._handle is not None and position is not None:
            position = _list_to_1d_numpy(position, dtype=np.int32, name='position')
            self.set_field('position', position)
        return self

2951
    def get_feature_name(self) -> List[str]:
2952
2953
2954
2955
        """Get the names of columns (features) in the Dataset.

        Returns
        -------
2956
        feature_names : list of str
2957
2958
            The names of columns (features) in the Dataset.
        """
2959
        if self._handle is None:
2960
2961
2962
2963
2964
            raise LightGBMError("Cannot get feature_name before construct dataset")
        num_feature = self.num_feature()
        tmp_out_len = ctypes.c_int(0)
        reserved_string_buffer_size = 255
        required_string_buffer_size = ctypes.c_size_t(0)
2965
        string_buffers = [ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(num_feature)]
2966
        ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))  # type: ignore[misc]
2967
        _safe_call(_LIB.LGBM_DatasetGetFeatureNames(
2968
            self._handle,
2969
            ctypes.c_int(num_feature),
2970
            ctypes.byref(tmp_out_len),
2971
            ctypes.c_size_t(reserved_string_buffer_size),
2972
2973
2974
2975
            ctypes.byref(required_string_buffer_size),
            ptr_string_buffers))
        if num_feature != tmp_out_len.value:
            raise ValueError("Length of feature names doesn't equal with num_feature")
2976
2977
2978
2979
        actual_string_buffer_size = required_string_buffer_size.value
        # if buffer length is not long enough, reallocate buffers
        if reserved_string_buffer_size < actual_string_buffer_size:
            string_buffers = [ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(num_feature)]
2980
            ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))  # type: ignore[misc]
2981
            _safe_call(_LIB.LGBM_DatasetGetFeatureNames(
2982
                self._handle,
2983
2984
2985
2986
2987
                ctypes.c_int(num_feature),
                ctypes.byref(tmp_out_len),
                ctypes.c_size_t(actual_string_buffer_size),
                ctypes.byref(required_string_buffer_size),
                ptr_string_buffers))
2988
        return [string_buffers[i].value.decode('utf-8') for i in range(num_feature)]
2989

2990
    def get_label(self) -> Optional[_LGBM_LabelType]:
2991
        """Get the label of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2992
2993
2994

        Returns
        -------
2995
        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None
2996
            The label information from the Dataset.
2997
            For a constructed ``Dataset``, this will only return a numpy array.
Guolin Ke's avatar
Guolin Ke committed
2998
        """
2999
        if self.label is None:
wxchan's avatar
wxchan committed
3000
            self.label = self.get_field('label')
Guolin Ke's avatar
Guolin Ke committed
3001
3002
        return self.label

3003
    def get_weight(self) -> Optional[_LGBM_WeightType]:
3004
        """Get the weight of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
3005
3006
3007

        Returns
        -------
3008
        weight : list, numpy 1-D array, pandas Series or None
3009
            Weight for each data point from the Dataset. Weights should be non-negative.
3010
            For a constructed ``Dataset``, this will only return ``None`` or a numpy array.
Guolin Ke's avatar
Guolin Ke committed
3011
        """
3012
        if self.weight is None:
wxchan's avatar
wxchan committed
3013
            self.weight = self.get_field('weight')
Guolin Ke's avatar
Guolin Ke committed
3014
3015
        return self.weight

3016
    def get_init_score(self) -> Optional[_LGBM_InitScoreType]:
3017
        """Get the initial score of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
3018
3019
3020

        Returns
        -------
3021
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None
3022
            Init score of Booster.
3023
            For a constructed ``Dataset``, this will only return ``None`` or a numpy array.
Guolin Ke's avatar
Guolin Ke committed
3024
        """
3025
        if self.init_score is None:
wxchan's avatar
wxchan committed
3026
            self.init_score = self.get_field('init_score')
Guolin Ke's avatar
Guolin Ke committed
3027
3028
        return self.init_score

3029
    def get_data(self) -> Optional[_LGBM_TrainDataType]:
3030
3031
3032
3033
        """Get the raw data of the Dataset.

        Returns
        -------
3034
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array or None
3035
3036
            Raw data used in the Dataset construction.
        """
3037
        if self._handle is None:
3038
            raise Exception("Cannot get data before construct Dataset")
3039
        if self._need_slice and self.used_indices is not None and self.reference is not None:
Guolin Ke's avatar
Guolin Ke committed
3040
3041
            self.data = self.reference.data
            if self.data is not None:
3042
                if isinstance(self.data, np.ndarray) or isinstance(self.data, scipy.sparse.spmatrix):
Guolin Ke's avatar
Guolin Ke committed
3043
                    self.data = self.data[self.used_indices, :]
3044
                elif isinstance(self.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
3045
                    self.data = self.data.iloc[self.used_indices].copy()
3046
                elif isinstance(self.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
3047
                    self.data = self.data[self.used_indices, :]
3048
3049
                elif isinstance(self.data, Sequence):
                    self.data = self.data[self.used_indices]
3050
                elif _is_list_of_sequences(self.data) and len(self.data) > 0:
3051
                    self.data = np.array(list(self._yield_row_from_seqlist(self.data, self.used_indices)))
Guolin Ke's avatar
Guolin Ke committed
3052
                else:
3053
3054
                    _log_warning(f"Cannot subset {type(self.data).__name__} type of raw data.\n"
                                 "Returning original raw data")
3055
            self._need_slice = False
Guolin Ke's avatar
Guolin Ke committed
3056
3057
3058
        if self.data is None:
            raise LightGBMError("Cannot call `get_data` after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
3059
3060
        return self.data

3061
    def get_group(self) -> Optional[_LGBM_GroupType]:
3062
        """Get the group of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
3063
3064
3065

        Returns
        -------
3066
        group : list, numpy 1-D array, pandas Series or None
3067
3068
3069
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
3070
3071
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
3072
            For a constructed ``Dataset``, this will only return ``None`` or a numpy array.
Guolin Ke's avatar
Guolin Ke committed
3073
        """
3074
        if self.group is None:
wxchan's avatar
wxchan committed
3075
            self.group = self.get_field('group')
Guolin Ke's avatar
Guolin Ke committed
3076
3077
            if self.group is not None:
                # group data from LightGBM is boundaries data, need to convert to group size
Nikita Titov's avatar
Nikita Titov committed
3078
                self.group = np.diff(self.group)
Guolin Ke's avatar
Guolin Ke committed
3079
3080
        return self.group

3081
    def get_position(self) -> Optional[_LGBM_PositionType]:
3082
3083
3084
3085
        """Get the position of the Dataset.

        Returns
        -------
3086
        position : numpy 1-D array, pandas Series or None
3087
            Position of items used in unbiased learning-to-rank task.
3088
            For a constructed ``Dataset``, this will only return ``None`` or a numpy array.
3089
3090
3091
3092
3093
        """
        if self.position is None:
            self.position = self.get_field('position')
        return self.position

3094
    def num_data(self) -> int:
3095
        """Get the number of rows in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
3096
3097
3098

        Returns
        -------
3099
3100
        number_of_rows : int
            The number of rows in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
3101
        """
3102
        if self._handle is not None:
3103
            ret = ctypes.c_int(0)
3104
            _safe_call(_LIB.LGBM_DatasetGetNumData(self._handle,
wxchan's avatar
wxchan committed
3105
3106
                                                   ctypes.byref(ret)))
            return ret.value
Guolin Ke's avatar
Guolin Ke committed
3107
        else:
3108
            raise LightGBMError("Cannot get num_data before construct dataset")
Guolin Ke's avatar
Guolin Ke committed
3109

3110
    def num_feature(self) -> int:
3111
        """Get the number of columns (features) in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
3112
3113
3114

        Returns
        -------
3115
3116
        number_of_columns : int
            The number of columns (features) in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
3117
        """
3118
        if self._handle is not None:
3119
            ret = ctypes.c_int(0)
3120
            _safe_call(_LIB.LGBM_DatasetGetNumFeature(self._handle,
wxchan's avatar
wxchan committed
3121
3122
                                                      ctypes.byref(ret)))
            return ret.value
Guolin Ke's avatar
Guolin Ke committed
3123
        else:
3124
            raise LightGBMError("Cannot get num_feature before construct dataset")
Guolin Ke's avatar
Guolin Ke committed
3125

3126
    def feature_num_bin(self, feature: Union[int, str]) -> int:
3127
3128
        """Get the number of bins for a feature.

3129
3130
        .. versionadded:: 4.0.0

3131
3132
        Parameters
        ----------
3133
3134
        feature : int or str
            Index or name of the feature.
3135
3136
3137
3138
3139
3140

        Returns
        -------
        number_of_bins : int
            The number of constructed bins for the feature in the Dataset.
        """
3141
        if self._handle is not None:
3142
            if isinstance(feature, str):
3143
3144
3145
                feature_index = self.feature_name.index(feature)
            else:
                feature_index = feature
3146
            ret = ctypes.c_int(0)
3147
            _safe_call(_LIB.LGBM_DatasetGetFeatureNumBin(self._handle,
3148
                                                         ctypes.c_int(feature_index),
3149
3150
3151
3152
3153
                                                         ctypes.byref(ret)))
            return ret.value
        else:
            raise LightGBMError("Cannot get feature_num_bin before construct dataset")

3154
    def get_ref_chain(self, ref_limit: int = 100) -> Set["Dataset"]:
3155
3156
3157
3158
3159
        """Get a chain of Dataset objects.

        Starts with r, then goes to r.reference (if exists),
        then to r.reference.reference, etc.
        until we hit ``ref_limit`` or a reference loop.
3160
3161
3162
3163
3164

        Parameters
        ----------
        ref_limit : int, optional (default=100)
            The limit number of references.
3165
3166
3167

        Returns
        -------
3168
3169
3170
        ref_chain : set of Dataset
            Chain of references of the Datasets.
        """
3171
        head = self
3172
        ref_chain: Set[Dataset] = set()
3173
3174
        while len(ref_chain) < ref_limit:
            if isinstance(head, Dataset):
3175
                ref_chain.add(head)
3176
3177
3178
3179
3180
3181
                if (head.reference is not None) and (head.reference not in ref_chain):
                    head = head.reference
                else:
                    break
            else:
                break
Nikita Titov's avatar
Nikita Titov committed
3182
        return ref_chain
3183

3184
    def add_features_from(self, other: "Dataset") -> "Dataset":
3185
3186
3187
3188
3189
3190
3191
3192
3193
3194
3195
3196
3197
3198
        """Add features from other Dataset to the current Dataset.

        Both Datasets must be constructed before calling this method.

        Parameters
        ----------
        other : Dataset
            The Dataset to take features from.

        Returns
        -------
        self : Dataset
            Dataset with the new features added.
        """
3199
        if self._handle is None or other._handle is None:
3200
            raise ValueError('Both source and target Datasets must be constructed before adding features')
3201
        _safe_call(_LIB.LGBM_DatasetAddFeaturesFrom(self._handle, other._handle))
Guolin Ke's avatar
Guolin Ke committed
3202
3203
3204
3205
3206
3207
3208
3209
        was_none = self.data is None
        old_self_data_type = type(self.data).__name__
        if other.data is None:
            self.data = None
        elif self.data is not None:
            if isinstance(self.data, np.ndarray):
                if isinstance(other.data, np.ndarray):
                    self.data = np.hstack((self.data, other.data))
3210
                elif isinstance(other.data, scipy.sparse.spmatrix):
Guolin Ke's avatar
Guolin Ke committed
3211
                    self.data = np.hstack((self.data, other.data.toarray()))
3212
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
3213
                    self.data = np.hstack((self.data, other.data.values))
3214
                elif isinstance(other.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
3215
3216
3217
                    self.data = np.hstack((self.data, other.data.to_numpy()))
                else:
                    self.data = None
3218
            elif isinstance(self.data, scipy.sparse.spmatrix):
Guolin Ke's avatar
Guolin Ke committed
3219
                sparse_format = self.data.getformat()
3220
                if isinstance(other.data, np.ndarray) or isinstance(other.data, scipy.sparse.spmatrix):
Guolin Ke's avatar
Guolin Ke committed
3221
                    self.data = scipy.sparse.hstack((self.data, other.data), format=sparse_format)
3222
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
3223
                    self.data = scipy.sparse.hstack((self.data, other.data.values), format=sparse_format)
3224
                elif isinstance(other.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
3225
3226
3227
                    self.data = scipy.sparse.hstack((self.data, other.data.to_numpy()), format=sparse_format)
                else:
                    self.data = None
3228
            elif isinstance(self.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
3229
3230
                if not PANDAS_INSTALLED:
                    raise LightGBMError("Cannot add features to DataFrame type of raw data "
3231
3232
                                        "without pandas installed. "
                                        "Install pandas and restart your session.")
Guolin Ke's avatar
Guolin Ke committed
3233
                if isinstance(other.data, np.ndarray):
3234
                    self.data = concat((self.data, pd_DataFrame(other.data)),
Guolin Ke's avatar
Guolin Ke committed
3235
                                       axis=1, ignore_index=True)
3236
                elif isinstance(other.data, scipy.sparse.spmatrix):
3237
                    self.data = concat((self.data, pd_DataFrame(other.data.toarray())),
Guolin Ke's avatar
Guolin Ke committed
3238
                                       axis=1, ignore_index=True)
3239
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
3240
3241
                    self.data = concat((self.data, other.data),
                                       axis=1, ignore_index=True)
3242
3243
                elif isinstance(other.data, dt_DataTable):
                    self.data = concat((self.data, pd_DataFrame(other.data.to_numpy())),
Guolin Ke's avatar
Guolin Ke committed
3244
3245
3246
                                       axis=1, ignore_index=True)
                else:
                    self.data = None
3247
            elif isinstance(self.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
3248
                if isinstance(other.data, np.ndarray):
3249
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data)))
3250
                elif isinstance(other.data, scipy.sparse.spmatrix):
3251
3252
3253
3254
3255
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.toarray())))
                elif isinstance(other.data, pd_DataFrame):
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.values)))
                elif isinstance(other.data, dt_DataTable):
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.to_numpy())))
Guolin Ke's avatar
Guolin Ke committed
3256
3257
3258
3259
3260
                else:
                    self.data = None
            else:
                self.data = None
        if self.data is None:
3261
3262
            err_msg = (f"Cannot add features from {type(other.data).__name__} type of raw data to "
                       f"{old_self_data_type} type of raw data.\n")
Guolin Ke's avatar
Guolin Ke committed
3263
3264
            err_msg += ("Set free_raw_data=False when construct Dataset to avoid this"
                        if was_none else "Freeing raw data")
3265
            _log_warning(err_msg)
Guolin Ke's avatar
Guolin Ke committed
3266
        self.feature_name = self.get_feature_name()
3267
3268
        _log_warning("Reseting categorical features.\n"
                     "You can set new categorical features via ``set_categorical_feature`` method")
Guolin Ke's avatar
Guolin Ke committed
3269
3270
        self.categorical_feature = "auto"
        self.pandas_categorical = None
3271
3272
        return self

3273
    def _dump_text(self, filename: Union[str, Path]) -> "Dataset":
3274
3275
3276
3277
3278
3279
        """Save Dataset to a text file.

        This format cannot be loaded back in by LightGBM, but is useful for debugging purposes.

        Parameters
        ----------
3280
        filename : str or pathlib.Path
3281
3282
3283
3284
3285
3286
3287
3288
            Name of the output file.

        Returns
        -------
        self : Dataset
            Returns self.
        """
        _safe_call(_LIB.LGBM_DatasetDumpText(
3289
            self.construct()._handle,
3290
            _c_str(str(filename))))
3291
3292
        return self

wxchan's avatar
wxchan committed
3293

3294
3295
3296
3297
_LGBM_CustomObjectiveFunction = Callable[
    [np.ndarray, Dataset],
    Tuple[np.ndarray, np.ndarray]
]
3298
3299
3300
3301
3302
3303
3304
3305
3306
3307
_LGBM_CustomEvalFunction = Union[
    Callable[
        [np.ndarray, Dataset],
        _LGBM_EvalFunctionResultType
    ],
    Callable[
        [np.ndarray, Dataset],
        List[_LGBM_EvalFunctionResultType]
    ]
]
3308
3309


3310
class Booster:
3311
    """Booster in LightGBM."""
3312

3313
3314
3315
3316
3317
3318
3319
    def __init__(
        self,
        params: Optional[Dict[str, Any]] = None,
        train_set: Optional[Dataset] = None,
        model_file: Optional[Union[str, Path]] = None,
        model_str: Optional[str] = None
    ):
3320
        """Initialize the Booster.
wxchan's avatar
wxchan committed
3321
3322
3323

        Parameters
        ----------
Nikita Titov's avatar
Nikita Titov committed
3324
        params : dict or None, optional (default=None)
3325
3326
3327
            Parameters for Booster.
        train_set : Dataset or None, optional (default=None)
            Training dataset.
3328
        model_file : str, pathlib.Path or None, optional (default=None)
wxchan's avatar
wxchan committed
3329
            Path to the model file.
3330
        model_str : str or None, optional (default=None)
3331
            Model will be loaded from this string.
wxchan's avatar
wxchan committed
3332
        """
3333
        self._handle = ctypes.c_void_p()
3334
        self._network = False
wxchan's avatar
wxchan committed
3335
        self.__need_reload_eval_info = True
3336
        self._train_data_name = "training"
3337
        self.__set_objective_to_none = False
wxchan's avatar
wxchan committed
3338
        self.best_iteration = -1
3339
        self.best_score: _LGBM_BoosterBestScoreType = {}
3340
        params = {} if params is None else deepcopy(params)
wxchan's avatar
wxchan committed
3341
        if train_set is not None:
3342
            # Training task
wxchan's avatar
wxchan committed
3343
            if not isinstance(train_set, Dataset):
3344
                raise TypeError(f'Training data should be Dataset instance, met {type(train_set).__name__}')
3345
3346
3347
3348
3349
3350
3351
3352
3353
3354
3355
3356
3357
3358
3359
3360
3361
3362
3363
3364
3365
3366
3367
3368
3369
3370
3371
3372
3373
3374
3375
3376
3377
3378
            params = _choose_param_value(
                main_param_name="machines",
                params=params,
                default_value=None
            )
            # if "machines" is given, assume user wants to do distributed learning, and set up network
            if params["machines"] is None:
                params.pop("machines", None)
            else:
                machines = params["machines"]
                if isinstance(machines, str):
                    num_machines_from_machine_list = len(machines.split(','))
                elif isinstance(machines, (list, set)):
                    num_machines_from_machine_list = len(machines)
                    machines = ','.join(machines)
                else:
                    raise ValueError("Invalid machines in params.")

                params = _choose_param_value(
                    main_param_name="num_machines",
                    params=params,
                    default_value=num_machines_from_machine_list
                )
                params = _choose_param_value(
                    main_param_name="local_listen_port",
                    params=params,
                    default_value=12400
                )
                self.set_network(
                    machines=machines,
                    local_listen_port=params["local_listen_port"],
                    listen_time_out=params.get("time_out", 120),
                    num_machines=params["num_machines"]
                )
3379
            # construct booster object
3380
3381
3382
            train_set.construct()
            # copy the parameters from train_set
            params.update(train_set.get_params())
3383
            params_str = _param_dict_to_str(params)
wxchan's avatar
wxchan committed
3384
            _safe_call(_LIB.LGBM_BoosterCreate(
3385
                train_set._handle,
3386
                _c_str(params_str),
3387
                ctypes.byref(self._handle)))
3388
            # save reference to data
wxchan's avatar
wxchan committed
3389
            self.train_set = train_set
3390
3391
            self.valid_sets: List[Dataset] = []
            self.name_valid_sets: List[str] = []
wxchan's avatar
wxchan committed
3392
            self.__num_dataset = 1
Guolin Ke's avatar
Guolin Ke committed
3393
3394
            self.__init_predictor = train_set._predictor
            if self.__init_predictor is not None:
wxchan's avatar
wxchan committed
3395
                _safe_call(_LIB.LGBM_BoosterMerge(
3396
3397
                    self._handle,
                    self.__init_predictor._handle))
Guolin Ke's avatar
Guolin Ke committed
3398
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
3399
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
3400
                self._handle,
wxchan's avatar
wxchan committed
3401
3402
                ctypes.byref(out_num_class)))
            self.__num_class = out_num_class.value
3403
            # buffer for inner predict
3404
            self.__inner_predict_buffer: List[Optional[np.ndarray]] = [None]
wxchan's avatar
wxchan committed
3405
3406
            self.__is_predicted_cur_iter = [False]
            self.__get_eval_info()
3407
            self.pandas_categorical = train_set.pandas_categorical
3408
            self.train_set_version = train_set.version
wxchan's avatar
wxchan committed
3409
        elif model_file is not None:
3410
            # Prediction task
Guolin Ke's avatar
Guolin Ke committed
3411
            out_num_iterations = ctypes.c_int(0)
wxchan's avatar
wxchan committed
3412
            _safe_call(_LIB.LGBM_BoosterCreateFromModelfile(
3413
                _c_str(str(model_file)),
wxchan's avatar
wxchan committed
3414
                ctypes.byref(out_num_iterations),
3415
                ctypes.byref(self._handle)))
Guolin Ke's avatar
Guolin Ke committed
3416
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
3417
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
3418
                self._handle,
wxchan's avatar
wxchan committed
3419
3420
                ctypes.byref(out_num_class)))
            self.__num_class = out_num_class.value
3421
            self.pandas_categorical = _load_pandas_categorical(file_name=model_file)
3422
3423
3424
            if params:
                _log_warning('Ignoring params argument, using parameters from model file.')
            params = self._get_loaded_param()
3425
        elif model_str is not None:
3426
            self.model_from_string(model_str)
wxchan's avatar
wxchan committed
3427
        else:
3428
3429
            raise TypeError('Need at least one training dataset or model file or model string '
                            'to create Booster instance')
3430
        self.params = params
wxchan's avatar
wxchan committed
3431

3432
    def __del__(self) -> None:
3433
        try:
3434
            if self._network:
3435
3436
3437
3438
                self.free_network()
        except AttributeError:
            pass
        try:
3439
3440
            if self._handle is not None:
                _safe_call(_LIB.LGBM_BoosterFree(self._handle))
3441
3442
        except AttributeError:
            pass
wxchan's avatar
wxchan committed
3443

3444
    def __copy__(self) -> "Booster":
wxchan's avatar
wxchan committed
3445
3446
        return self.__deepcopy__(None)

3447
    def __deepcopy__(self, _) -> "Booster":
3448
        model_str = self.model_to_string(num_iteration=-1)
3449
        return Booster(model_str=model_str)
wxchan's avatar
wxchan committed
3450

3451
    def __getstate__(self) -> Dict[str, Any]:
wxchan's avatar
wxchan committed
3452
        this = self.__dict__.copy()
3453
        handle = this['_handle']
wxchan's avatar
wxchan committed
3454
3455
3456
        this.pop('train_set', None)
        this.pop('valid_sets', None)
        if handle is not None:
3457
            this["_handle"] = self.model_to_string(num_iteration=-1)
wxchan's avatar
wxchan committed
3458
3459
        return this

3460
    def __setstate__(self, state: Dict[str, Any]) -> None:
3461
        model_str = state.get('_handle', state.get('handle', None))
3462
        if model_str is not None:
wxchan's avatar
wxchan committed
3463
            handle = ctypes.c_void_p()
Guolin Ke's avatar
Guolin Ke committed
3464
            out_num_iterations = ctypes.c_int(0)
3465
            _safe_call(_LIB.LGBM_BoosterLoadModelFromString(
3466
                _c_str(model_str),
3467
3468
                ctypes.byref(out_num_iterations),
                ctypes.byref(handle)))
3469
            state['_handle'] = handle
wxchan's avatar
wxchan committed
3470
3471
        self.__dict__.update(state)

3472
3473
3474
3475
    def _get_loaded_param(self) -> Dict[str, Any]:
        buffer_len = 1 << 20
        tmp_out_len = ctypes.c_int64(0)
        string_buffer = ctypes.create_string_buffer(buffer_len)
3476
        ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
3477
        _safe_call(_LIB.LGBM_BoosterGetLoadedParam(
3478
            self._handle,
3479
3480
3481
3482
3483
3484
3485
            ctypes.c_int64(buffer_len),
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
        # if buffer length is not long enough, re-allocate a buffer
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
3486
            ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
3487
            _safe_call(_LIB.LGBM_BoosterGetLoadedParam(
3488
                self._handle,
3489
3490
3491
3492
3493
                ctypes.c_int64(actual_len),
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
        return json.loads(string_buffer.value.decode('utf-8'))

3494
    def free_dataset(self) -> "Booster":
Nikita Titov's avatar
Nikita Titov committed
3495
3496
3497
3498
3499
3500
3501
        """Free Booster's Datasets.

        Returns
        -------
        self : Booster
            Booster without Datasets.
        """
wxchan's avatar
wxchan committed
3502
3503
        self.__dict__.pop('train_set', None)
        self.__dict__.pop('valid_sets', None)
3504
        self.__num_dataset = 0
Nikita Titov's avatar
Nikita Titov committed
3505
        return self
wxchan's avatar
wxchan committed
3506

3507
    def _free_buffer(self) -> "Booster":
3508
3509
        self.__inner_predict_buffer = []
        self.__is_predicted_cur_iter = []
Nikita Titov's avatar
Nikita Titov committed
3510
        return self
3511

3512
3513
3514
3515
3516
3517
3518
    def set_network(
        self,
        machines: Union[List[str], Set[str], str],
        local_listen_port: int = 12400,
        listen_time_out: int = 120,
        num_machines: int = 1
    ) -> "Booster":
3519
3520
3521
3522
        """Set the network configuration.

        Parameters
        ----------
3523
        machines : list, set or str
3524
            Names of machines.
Nikita Titov's avatar
Nikita Titov committed
3525
        local_listen_port : int, optional (default=12400)
3526
            TCP listen port for local machines.
Nikita Titov's avatar
Nikita Titov committed
3527
        listen_time_out : int, optional (default=120)
3528
            Socket time-out in minutes.
Nikita Titov's avatar
Nikita Titov committed
3529
        num_machines : int, optional (default=1)
3530
            The number of machines for distributed learning application.
Nikita Titov's avatar
Nikita Titov committed
3531
3532
3533
3534
3535

        Returns
        -------
        self : Booster
            Booster with set network.
3536
        """
3537
3538
        if isinstance(machines, (list, set)):
            machines = ','.join(machines)
3539
        _safe_call(_LIB.LGBM_NetworkInit(_c_str(machines),
3540
3541
3542
                                         ctypes.c_int(local_listen_port),
                                         ctypes.c_int(listen_time_out),
                                         ctypes.c_int(num_machines)))
3543
        self._network = True
Nikita Titov's avatar
Nikita Titov committed
3544
        return self
3545

3546
    def free_network(self) -> "Booster":
Nikita Titov's avatar
Nikita Titov committed
3547
3548
3549
3550
3551
3552
3553
        """Free Booster's network.

        Returns
        -------
        self : Booster
            Booster with freed network.
        """
3554
        _safe_call(_LIB.LGBM_NetworkFree())
3555
        self._network = False
Nikita Titov's avatar
Nikita Titov committed
3556
        return self
3557

3558
    def trees_to_dataframe(self) -> pd_DataFrame:
3559
3560
        """Parse the fitted model and return in an easy-to-read pandas DataFrame.

3561
3562
3563
3564
        The returned DataFrame has the following columns.

            - ``tree_index`` : int64, which tree a node belongs to. 0-based, so a value of ``6``, for example, means "this node is in the 7th tree".
            - ``node_depth`` : int64, how far a node is from the root of the tree. The root node has a value of ``1``, its direct children are ``2``, etc.
3565
3566
3567
3568
3569
            - ``node_index`` : str, unique identifier for a node.
            - ``left_child`` : str, ``node_index`` of the child node to the left of a split. ``None`` for leaf nodes.
            - ``right_child`` : str, ``node_index`` of the child node to the right of a split. ``None`` for leaf nodes.
            - ``parent_index`` : str, ``node_index`` of this node's parent. ``None`` for the root node.
            - ``split_feature`` : str, name of the feature used for splitting. ``None`` for leaf nodes.
3570
3571
            - ``split_gain`` : float64, gain from adding this split to the tree. ``NaN`` for leaf nodes.
            - ``threshold`` : float64, value of the feature used to decide which side of the split a record will go down. ``NaN`` for leaf nodes.
3572
            - ``decision_type`` : str, logical operator describing how to compare a value to ``threshold``.
3573
3574
              For example, ``split_feature = "Column_10", threshold = 15, decision_type = "<="`` means that
              records where ``Column_10 <= 15`` follow the left side of the split, otherwise follows the right side of the split. ``None`` for leaf nodes.
3575
3576
            - ``missing_direction`` : str, split direction that missing values should go to. ``None`` for leaf nodes.
            - ``missing_type`` : str, describes what types of values are treated as missing.
3577
            - ``value`` : float64, predicted value for this leaf node, multiplied by the learning rate.
3578
            - ``weight`` : float64 or int64, sum of Hessian (second-order derivative of objective), summed over observations that fall in this node.
3579
3580
            - ``count`` : int64, number of records in the training data that fall into this node.

3581
3582
3583
3584
3585
3586
        Returns
        -------
        result : pandas DataFrame
            Returns a pandas DataFrame of the parsed model.
        """
        if not PANDAS_INSTALLED:
3587
3588
            raise LightGBMError('This method cannot be run without pandas installed. '
                                'You must install pandas and restart your session to use this method.')
3589
3590
3591
3592

        if self.num_trees() == 0:
            raise LightGBMError('There are no trees in this Booster and thus nothing to parse')

3593
        def _is_split_node(tree: Dict[str, Any]) -> bool:
3594
3595
            return 'split_index' in tree.keys()

3596
3597
3598
3599
3600
3601
3602
3603
3604
3605
3606
3607
        def create_node_record(
            tree: Dict[str, Any],
            node_depth: int = 1,
            tree_index: Optional[int] = None,
            feature_names: Optional[List[str]] = None,
            parent_node: Optional[str] = None
        ) -> Dict[str, Any]:

            def _get_node_index(
                tree: Dict[str, Any],
                tree_index: Optional[int]
            ) -> str:
3608
                tree_num = f'{tree_index}-' if tree_index is not None else ''
3609
3610
3611
                is_split = _is_split_node(tree)
                node_type = 'S' if is_split else 'L'
                # if a single node tree it won't have `leaf_index` so return 0
3612
3613
                node_num = tree.get('split_index' if is_split else 'leaf_index', 0)
                return f"{tree_num}{node_type}{node_num}"
3614

3615
3616
3617
3618
            def _get_split_feature(
                tree: Dict[str, Any],
                feature_names: Optional[List[str]]
            ) -> Optional[str]:
3619
3620
3621
3622
3623
3624
3625
3626
3627
                if _is_split_node(tree):
                    if feature_names is not None:
                        feature_name = feature_names[tree['split_feature']]
                    else:
                        feature_name = tree['split_feature']
                else:
                    feature_name = None
                return feature_name

3628
            def _is_single_node_tree(tree: Dict[str, Any]) -> bool:
3629
                return set(tree.keys()) == {'leaf_value'}
3630
3631

            # Create the node record, and populate universal data members
3632
            node: Dict[str, Union[int, str, None]] = OrderedDict()
3633
3634
3635
3636
3637
3638
3639
3640
3641
3642
3643
3644
3645
3646
3647
3648
3649
3650
3651
3652
3653
3654
3655
3656
3657
3658
3659
3660
3661
3662
3663
3664
3665
3666
3667
3668
            node['tree_index'] = tree_index
            node['node_depth'] = node_depth
            node['node_index'] = _get_node_index(tree, tree_index)
            node['left_child'] = None
            node['right_child'] = None
            node['parent_index'] = parent_node
            node['split_feature'] = _get_split_feature(tree, feature_names)
            node['split_gain'] = None
            node['threshold'] = None
            node['decision_type'] = None
            node['missing_direction'] = None
            node['missing_type'] = None
            node['value'] = None
            node['weight'] = None
            node['count'] = None

            # Update values to reflect node type (leaf or split)
            if _is_split_node(tree):
                node['left_child'] = _get_node_index(tree['left_child'], tree_index)
                node['right_child'] = _get_node_index(tree['right_child'], tree_index)
                node['split_gain'] = tree['split_gain']
                node['threshold'] = tree['threshold']
                node['decision_type'] = tree['decision_type']
                node['missing_direction'] = 'left' if tree['default_left'] else 'right'
                node['missing_type'] = tree['missing_type']
                node['value'] = tree['internal_value']
                node['weight'] = tree['internal_weight']
                node['count'] = tree['internal_count']
            else:
                node['value'] = tree['leaf_value']
                if not _is_single_node_tree(tree):
                    node['weight'] = tree['leaf_weight']
                    node['count'] = tree['leaf_count']

            return node

3669
3670
3671
3672
3673
3674
3675
        def tree_dict_to_node_list(
            tree: Dict[str, Any],
            node_depth: int = 1,
            tree_index: Optional[int] = None,
            feature_names: Optional[List[str]] = None,
            parent_node: Optional[str] = None
        ) -> List[Dict[str, Any]]:
3676

3677
            node = create_node_record(tree=tree,
3678
3679
3680
3681
3682
3683
3684
3685
3686
3687
3688
3689
                                      node_depth=node_depth,
                                      tree_index=tree_index,
                                      feature_names=feature_names,
                                      parent_node=parent_node)

            res = [node]

            if _is_split_node(tree):
                # traverse the next level of the tree
                children = ['left_child', 'right_child']
                for child in children:
                    subtree_list = tree_dict_to_node_list(
3690
                        tree=tree[child],
3691
3692
3693
                        node_depth=node_depth + 1,
                        tree_index=tree_index,
                        feature_names=feature_names,
3694
3695
                        parent_node=node['node_index']
                    )
3696
3697
3698
3699
3700
3701
3702
3703
3704
                    # In tree format, "subtree_list" is a list of node records (dicts),
                    # and we add node to the list.
                    res.extend(subtree_list)
            return res

        model_dict = self.dump_model()
        feature_names = model_dict['feature_names']
        model_list = []
        for tree in model_dict['tree_info']:
3705
            model_list.extend(tree_dict_to_node_list(tree=tree['tree_structure'],
3706
3707
3708
                                                     tree_index=tree['tree_index'],
                                                     feature_names=feature_names))

3709
        return pd_DataFrame(model_list, columns=model_list[0].keys())
3710

3711
    def set_train_data_name(self, name: str) -> "Booster":
3712
3713
3714
3715
        """Set the name to the training Dataset.

        Parameters
        ----------
3716
        name : str
Nikita Titov's avatar
Nikita Titov committed
3717
3718
3719
3720
3721
3722
            Name for the training Dataset.

        Returns
        -------
        self : Booster
            Booster with set training Dataset name.
3723
        """
3724
        self._train_data_name = name
Nikita Titov's avatar
Nikita Titov committed
3725
        return self
wxchan's avatar
wxchan committed
3726

3727
    def add_valid(self, data: Dataset, name: str) -> "Booster":
3728
        """Add validation data.
wxchan's avatar
wxchan committed
3729
3730
3731
3732

        Parameters
        ----------
        data : Dataset
3733
            Validation data.
3734
        name : str
3735
            Name of validation data.
Nikita Titov's avatar
Nikita Titov committed
3736
3737
3738
3739
3740

        Returns
        -------
        self : Booster
            Booster with set validation data.
wxchan's avatar
wxchan committed
3741
        """
Guolin Ke's avatar
Guolin Ke committed
3742
        if not isinstance(data, Dataset):
3743
            raise TypeError(f'Validation data should be Dataset instance, met {type(data).__name__}')
Guolin Ke's avatar
Guolin Ke committed
3744
        if data._predictor is not self.__init_predictor:
3745
3746
            raise LightGBMError("Add validation data failed, "
                                "you should use same predictor for these data")
wxchan's avatar
wxchan committed
3747
        _safe_call(_LIB.LGBM_BoosterAddValidData(
3748
3749
            self._handle,
            data.construct()._handle))
wxchan's avatar
wxchan committed
3750
3751
3752
3753
3754
        self.valid_sets.append(data)
        self.name_valid_sets.append(name)
        self.__num_dataset += 1
        self.__inner_predict_buffer.append(None)
        self.__is_predicted_cur_iter.append(False)
Nikita Titov's avatar
Nikita Titov committed
3755
        return self
wxchan's avatar
wxchan committed
3756

3757
    def reset_parameter(self, params: Dict[str, Any]) -> "Booster":
3758
        """Reset parameters of Booster.
wxchan's avatar
wxchan committed
3759
3760
3761
3762

        Parameters
        ----------
        params : dict
3763
            New parameters for Booster.
Nikita Titov's avatar
Nikita Titov committed
3764
3765
3766
3767
3768

        Returns
        -------
        self : Booster
            Booster with new parameters.
wxchan's avatar
wxchan committed
3769
        """
3770
        params_str = _param_dict_to_str(params)
wxchan's avatar
wxchan committed
3771
3772
        if params_str:
            _safe_call(_LIB.LGBM_BoosterResetParameter(
3773
                self._handle,
3774
                _c_str(params_str)))
Guolin Ke's avatar
Guolin Ke committed
3775
        self.params.update(params)
Nikita Titov's avatar
Nikita Titov committed
3776
        return self
wxchan's avatar
wxchan committed
3777

3778
3779
3780
3781
3782
    def update(
        self,
        train_set: Optional[Dataset] = None,
        fobj: Optional[_LGBM_CustomObjectiveFunction] = None
    ) -> bool:
Nikita Titov's avatar
Nikita Titov committed
3783
        """Update Booster for one iteration.
3784

wxchan's avatar
wxchan committed
3785
3786
        Parameters
        ----------
3787
3788
3789
3790
        train_set : Dataset or None, optional (default=None)
            Training data.
            If None, last training data is used.
        fobj : callable or None, optional (default=None)
wxchan's avatar
wxchan committed
3791
            Customized objective function.
3792
3793
3794
            Should accept two parameters: preds, train_data,
            and return (grad, hess).

3795
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
3796
                    The predicted values.
3797
3798
                    Predicted values are returned before any transformation,
                    e.g. they are raw margin instead of probability of positive class for binary task.
3799
3800
                train_data : Dataset
                    The training dataset.
3801
                grad : numpy 1-D array or numpy 2-D array (for multi-class task)
3802
3803
                    The value of the first order derivative (gradient) of the loss
                    with respect to the elements of preds for each sample point.
3804
                hess : numpy 1-D array or numpy 2-D array (for multi-class task)
3805
3806
                    The value of the second order derivative (Hessian) of the loss
                    with respect to the elements of preds for each sample point.
wxchan's avatar
wxchan committed
3807

3808
            For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes],
3809
            and grad and hess should be returned in the same format.
3810

wxchan's avatar
wxchan committed
3811
3812
        Returns
        -------
3813
3814
        is_finished : bool
            Whether the update was successfully finished.
wxchan's avatar
wxchan committed
3815
        """
3816
        # need reset training data
3817
3818
3819
3820
3821
3822
        if train_set is None and self.train_set_version != self.train_set.version:
            train_set = self.train_set
            is_the_same_train_set = False
        else:
            is_the_same_train_set = train_set is self.train_set and self.train_set_version == train_set.version
        if train_set is not None and not is_the_same_train_set:
Guolin Ke's avatar
Guolin Ke committed
3823
            if not isinstance(train_set, Dataset):
3824
                raise TypeError(f'Training data should be Dataset instance, met {type(train_set).__name__}')
Guolin Ke's avatar
Guolin Ke committed
3825
            if train_set._predictor is not self.__init_predictor:
3826
3827
                raise LightGBMError("Replace training data failed, "
                                    "you should use same predictor for these data")
wxchan's avatar
wxchan committed
3828
3829
            self.train_set = train_set
            _safe_call(_LIB.LGBM_BoosterResetTrainingData(
3830
3831
                self._handle,
                self.train_set.construct()._handle))
wxchan's avatar
wxchan committed
3832
            self.__inner_predict_buffer[0] = None
3833
            self.train_set_version = self.train_set.version
wxchan's avatar
wxchan committed
3834
3835
        is_finished = ctypes.c_int(0)
        if fobj is None:
3836
            if self.__set_objective_to_none:
3837
                raise LightGBMError('Cannot update due to null objective function.')
wxchan's avatar
wxchan committed
3838
            _safe_call(_LIB.LGBM_BoosterUpdateOneIter(
3839
                self._handle,
wxchan's avatar
wxchan committed
3840
                ctypes.byref(is_finished)))
3841
            self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
wxchan's avatar
wxchan committed
3842
3843
            return is_finished.value == 1
        else:
3844
            if not self.__set_objective_to_none:
Nikita Titov's avatar
Nikita Titov committed
3845
                self.reset_parameter({"objective": "none"}).__set_objective_to_none = True
wxchan's avatar
wxchan committed
3846
3847
3848
            grad, hess = fobj(self.__inner_predict(0), self.train_set)
            return self.__boost(grad, hess)

3849
3850
3851
3852
3853
    def __boost(
        self,
        grad: np.ndarray,
        hess: np.ndarray
    ) -> bool:
3854
        """Boost Booster for one iteration with customized gradient statistics.
Nikita Titov's avatar
Nikita Titov committed
3855

Nikita Titov's avatar
Nikita Titov committed
3856
3857
        .. note::

3858
3859
            Score is returned before any transformation,
            e.g. it is raw margin instead of probability of positive class for binary task.
3860
            For multi-class task, score are numpy 2-D array of shape = [n_samples, n_classes],
3861
            and grad and hess should be returned in the same format.
3862

wxchan's avatar
wxchan committed
3863
3864
        Parameters
        ----------
3865
        grad : numpy 1-D array or numpy 2-D array (for multi-class task)
3866
3867
            The value of the first order derivative (gradient) of the loss
            with respect to the elements of score for each sample point.
3868
        hess : numpy 1-D array or numpy 2-D array (for multi-class task)
3869
3870
            The value of the second order derivative (Hessian) of the loss
            with respect to the elements of score for each sample point.
wxchan's avatar
wxchan committed
3871
3872
3873

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
3874
3875
        is_finished : bool
            Whether the boost was successfully finished.
wxchan's avatar
wxchan committed
3876
        """
3877
3878
3879
        if self.__num_class > 1:
            grad = grad.ravel(order='F')
            hess = hess.ravel(order='F')
3880
3881
        grad = _list_to_1d_numpy(grad, dtype=np.float32, name='gradient')
        hess = _list_to_1d_numpy(hess, dtype=np.float32, name='hessian')
3882
3883
        assert grad.flags.c_contiguous
        assert hess.flags.c_contiguous
wxchan's avatar
wxchan committed
3884
        if len(grad) != len(hess):
3885
3886
            raise ValueError(f"Lengths of gradient ({len(grad)}) and Hessian ({len(hess)}) don't match")
        num_train_data = self.train_set.num_data()
3887
        if len(grad) != num_train_data * self.__num_class:
3888
3889
3890
            raise ValueError(
                f"Lengths of gradient ({len(grad)}) and Hessian ({len(hess)}) "
                f"don't match training data length ({num_train_data}) * "
3891
                f"number of models per one iteration ({self.__num_class})"
3892
            )
wxchan's avatar
wxchan committed
3893
3894
        is_finished = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterUpdateOneIterCustom(
3895
            self._handle,
wxchan's avatar
wxchan committed
3896
3897
3898
            grad.ctypes.data_as(ctypes.POINTER(ctypes.c_float)),
            hess.ctypes.data_as(ctypes.POINTER(ctypes.c_float)),
            ctypes.byref(is_finished)))
3899
        self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
wxchan's avatar
wxchan committed
3900
3901
        return is_finished.value == 1

3902
    def rollback_one_iter(self) -> "Booster":
Nikita Titov's avatar
Nikita Titov committed
3903
3904
3905
3906
3907
3908
3909
        """Rollback one iteration.

        Returns
        -------
        self : Booster
            Booster with rolled back one iteration.
        """
wxchan's avatar
wxchan committed
3910
        _safe_call(_LIB.LGBM_BoosterRollbackOneIter(
3911
            self._handle))
3912
        self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
Nikita Titov's avatar
Nikita Titov committed
3913
        return self
wxchan's avatar
wxchan committed
3914

3915
    def current_iteration(self) -> int:
3916
3917
3918
3919
3920
3921
3922
        """Get the index of the current iteration.

        Returns
        -------
        cur_iter : int
            The index of the current iteration.
        """
Guolin Ke's avatar
Guolin Ke committed
3923
        out_cur_iter = ctypes.c_int(0)
wxchan's avatar
wxchan committed
3924
        _safe_call(_LIB.LGBM_BoosterGetCurrentIteration(
3925
            self._handle,
wxchan's avatar
wxchan committed
3926
3927
3928
            ctypes.byref(out_cur_iter)))
        return out_cur_iter.value

3929
    def num_model_per_iteration(self) -> int:
3930
3931
3932
3933
3934
3935
3936
3937
3938
        """Get number of models per iteration.

        Returns
        -------
        model_per_iter : int
            The number of models per iteration.
        """
        model_per_iter = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterNumModelPerIteration(
3939
            self._handle,
3940
3941
3942
            ctypes.byref(model_per_iter)))
        return model_per_iter.value

3943
    def num_trees(self) -> int:
3944
3945
3946
3947
3948
3949
3950
3951
3952
        """Get number of weak sub-models.

        Returns
        -------
        num_trees : int
            The number of weak sub-models.
        """
        num_trees = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterNumberOfTotalModel(
3953
            self._handle,
3954
3955
3956
            ctypes.byref(num_trees)))
        return num_trees.value

3957
    def upper_bound(self) -> float:
3958
3959
3960
3961
        """Get upper bound value of a model.

        Returns
        -------
3962
        upper_bound : float
3963
3964
3965
3966
            Upper bound value of the model.
        """
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetUpperBoundValue(
3967
            self._handle,
3968
3969
3970
            ctypes.byref(ret)))
        return ret.value

3971
    def lower_bound(self) -> float:
3972
3973
3974
3975
        """Get lower bound value of a model.

        Returns
        -------
3976
        lower_bound : float
3977
3978
3979
3980
            Lower bound value of the model.
        """
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetLowerBoundValue(
3981
            self._handle,
3982
3983
3984
            ctypes.byref(ret)))
        return ret.value

3985
3986
3987
3988
3989
3990
    def eval(
        self,
        data: Dataset,
        name: str,
        feval: Optional[Union[_LGBM_CustomEvalFunction, List[_LGBM_CustomEvalFunction]]] = None
    ) -> List[_LGBM_BoosterEvalMethodResultType]:
3991
        """Evaluate for data.
wxchan's avatar
wxchan committed
3992
3993
3994

        Parameters
        ----------
3995
3996
        data : Dataset
            Data for the evaluating.
3997
        name : str
3998
            Name of the data.
3999
        feval : callable, list of callable, or None, optional (default=None)
4000
            Customized evaluation function.
4001
            Each evaluation function should accept two parameters: preds, eval_data,
4002
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
4003

4004
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
4005
                    The predicted values.
4006
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
4007
                    If custom objective function is used, predicted values are returned before any transformation,
4008
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
4009
                eval_data : Dataset
4010
                    A ``Dataset`` to evaluate.
4011
                eval_name : str
Andrew Ziem's avatar
Andrew Ziem committed
4012
                    The name of evaluation function (without whitespace).
4013
4014
4015
4016
4017
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

wxchan's avatar
wxchan committed
4018
4019
        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
4020
        result : list
4021
            List with (dataset_name, eval_name, eval_result, is_higher_better) tuples.
wxchan's avatar
wxchan committed
4022
        """
Guolin Ke's avatar
Guolin Ke committed
4023
4024
        if not isinstance(data, Dataset):
            raise TypeError("Can only eval for Dataset instance")
wxchan's avatar
wxchan committed
4025
4026
4027
4028
        data_idx = -1
        if data is self.train_set:
            data_idx = 0
        else:
4029
            for i in range(len(self.valid_sets)):
wxchan's avatar
wxchan committed
4030
4031
4032
                if data is self.valid_sets[i]:
                    data_idx = i + 1
                    break
4033
        # need to push new valid data
wxchan's avatar
wxchan committed
4034
4035
4036
4037
4038
4039
        if data_idx == -1:
            self.add_valid(data, name)
            data_idx = self.__num_dataset - 1

        return self.__inner_eval(name, data_idx, feval)

4040
4041
4042
4043
    def eval_train(
        self,
        feval: Optional[Union[_LGBM_CustomEvalFunction, List[_LGBM_CustomEvalFunction]]] = None
    ) -> List[_LGBM_BoosterEvalMethodResultType]:
4044
        """Evaluate for training data.
wxchan's avatar
wxchan committed
4045
4046
4047

        Parameters
        ----------
4048
        feval : callable, list of callable, or None, optional (default=None)
4049
            Customized evaluation function.
4050
            Each evaluation function should accept two parameters: preds, eval_data,
4051
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
4052

4053
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
4054
                    The predicted values.
4055
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
4056
                    If custom objective function is used, predicted values are returned before any transformation,
4057
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
Akshita Dixit's avatar
Akshita Dixit committed
4058
                eval_data : Dataset
4059
                    The training dataset.
4060
                eval_name : str
Andrew Ziem's avatar
Andrew Ziem committed
4061
                    The name of evaluation function (without whitespace).
4062
4063
4064
4065
4066
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

wxchan's avatar
wxchan committed
4067
4068
        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
4069
        result : list
4070
            List with (train_dataset_name, eval_name, eval_result, is_higher_better) tuples.
wxchan's avatar
wxchan committed
4071
        """
4072
        return self.__inner_eval(self._train_data_name, 0, feval)
wxchan's avatar
wxchan committed
4073

4074
4075
4076
4077
    def eval_valid(
        self,
        feval: Optional[Union[_LGBM_CustomEvalFunction, List[_LGBM_CustomEvalFunction]]] = None
    ) -> List[_LGBM_BoosterEvalMethodResultType]:
4078
        """Evaluate for validation data.
wxchan's avatar
wxchan committed
4079
4080
4081

        Parameters
        ----------
4082
        feval : callable, list of callable, or None, optional (default=None)
4083
            Customized evaluation function.
4084
            Each evaluation function should accept two parameters: preds, eval_data,
4085
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
4086

4087
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
4088
                    The predicted values.
4089
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
4090
                    If custom objective function is used, predicted values are returned before any transformation,
4091
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
Akshita Dixit's avatar
Akshita Dixit committed
4092
                eval_data : Dataset
4093
                    The validation dataset.
4094
                eval_name : str
Andrew Ziem's avatar
Andrew Ziem committed
4095
                    The name of evaluation function (without whitespace).
4096
4097
4098
4099
4100
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

wxchan's avatar
wxchan committed
4101
4102
        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
4103
        result : list
4104
            List with (validation_dataset_name, eval_name, eval_result, is_higher_better) tuples.
wxchan's avatar
wxchan committed
4105
        """
4106
        return [item for i in range(1, self.__num_dataset)
wxchan's avatar
wxchan committed
4107
                for item in self.__inner_eval(self.name_valid_sets[i - 1], i, feval)]
wxchan's avatar
wxchan committed
4108

4109
4110
4111
4112
4113
4114
4115
    def save_model(
        self,
        filename: Union[str, Path],
        num_iteration: Optional[int] = None,
        start_iteration: int = 0,
        importance_type: str = 'split'
    ) -> "Booster":
4116
        """Save Booster to file.
wxchan's avatar
wxchan committed
4117
4118
4119

        Parameters
        ----------
4120
        filename : str or pathlib.Path
4121
            Filename to save Booster.
4122
4123
4124
4125
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be saved.
            If None, if the best iteration exists, it is saved; otherwise, all iterations are saved.
            If <= 0, all iterations are saved.
Nikita Titov's avatar
Nikita Titov committed
4126
        start_iteration : int, optional (default=0)
4127
            Start index of the iteration that should be saved.
4128
        importance_type : str, optional (default="split")
4129
4130
4131
            What type of feature importance should be saved.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
Nikita Titov's avatar
Nikita Titov committed
4132
4133
4134
4135
4136

        Returns
        -------
        self : Booster
            Returns self.
wxchan's avatar
wxchan committed
4137
        """
4138
        if num_iteration is None:
4139
            num_iteration = self.best_iteration
4140
        importance_type_int = _FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
wxchan's avatar
wxchan committed
4141
        _safe_call(_LIB.LGBM_BoosterSaveModel(
4142
            self._handle,
4143
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
4144
            ctypes.c_int(num_iteration),
4145
            ctypes.c_int(importance_type_int),
4146
            _c_str(str(filename))))
4147
        _dump_pandas_categorical(self.pandas_categorical, filename)
Nikita Titov's avatar
Nikita Titov committed
4148
        return self
wxchan's avatar
wxchan committed
4149

4150
4151
4152
4153
4154
    def shuffle_models(
        self,
        start_iteration: int = 0,
        end_iteration: int = -1
    ) -> "Booster":
4155
        """Shuffle models.
Nikita Titov's avatar
Nikita Titov committed
4156

4157
4158
4159
        Parameters
        ----------
        start_iteration : int, optional (default=0)
4160
            The first iteration that will be shuffled.
4161
4162
        end_iteration : int, optional (default=-1)
            The last iteration that will be shuffled.
4163
            If <= 0, means the last available iteration.
4164

Nikita Titov's avatar
Nikita Titov committed
4165
4166
4167
4168
        Returns
        -------
        self : Booster
            Booster with shuffled models.
4169
        """
4170
        _safe_call(_LIB.LGBM_BoosterShuffleModels(
4171
            self._handle,
Guolin Ke's avatar
Guolin Ke committed
4172
4173
            ctypes.c_int(start_iteration),
            ctypes.c_int(end_iteration)))
Nikita Titov's avatar
Nikita Titov committed
4174
        return self
4175

4176
    def model_from_string(self, model_str: str) -> "Booster":
4177
4178
4179
4180
        """Load Booster from a string.

        Parameters
        ----------
4181
        model_str : str
4182
4183
4184
4185
            Model will be loaded from this string.

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
4186
        self : Booster
4187
4188
            Loaded Booster object.
        """
4189
4190
4191
        # ensure that existing Booster is freed before replacing it
        # with a new one createdfrom file
        _safe_call(_LIB.LGBM_BoosterFree(self._handle))
4192
        self._free_buffer()
4193
        self._handle = ctypes.c_void_p()
4194
4195
        out_num_iterations = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterLoadModelFromString(
4196
            _c_str(model_str),
4197
            ctypes.byref(out_num_iterations),
4198
            ctypes.byref(self._handle)))
4199
4200
        out_num_class = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetNumClasses(
4201
            self._handle,
4202
4203
            ctypes.byref(out_num_class)))
        self.__num_class = out_num_class.value
4204
        self.pandas_categorical = _load_pandas_categorical(model_str=model_str)
4205
4206
        return self

4207
4208
4209
4210
4211
4212
    def model_to_string(
        self,
        num_iteration: Optional[int] = None,
        start_iteration: int = 0,
        importance_type: str = 'split'
    ) -> str:
4213
        """Save Booster to string.
4214

4215
4216
4217
4218
4219
4220
        Parameters
        ----------
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be saved.
            If None, if the best iteration exists, it is saved; otherwise, all iterations are saved.
            If <= 0, all iterations are saved.
Nikita Titov's avatar
Nikita Titov committed
4221
        start_iteration : int, optional (default=0)
4222
            Start index of the iteration that should be saved.
4223
        importance_type : str, optional (default="split")
4224
4225
4226
            What type of feature importance should be saved.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
4227
4228
4229

        Returns
        -------
4230
        str_repr : str
4231
4232
            String representation of Booster.
        """
4233
        if num_iteration is None:
4234
            num_iteration = self.best_iteration
4235
        importance_type_int = _FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
4236
        buffer_len = 1 << 20
4237
        tmp_out_len = ctypes.c_int64(0)
4238
        string_buffer = ctypes.create_string_buffer(buffer_len)
4239
        ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
4240
        _safe_call(_LIB.LGBM_BoosterSaveModelToString(
4241
            self._handle,
4242
            ctypes.c_int(start_iteration),
4243
            ctypes.c_int(num_iteration),
4244
            ctypes.c_int(importance_type_int),
4245
            ctypes.c_int64(buffer_len),
4246
4247
4248
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
4249
        # if buffer length is not long enough, re-allocate a buffer
4250
4251
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
4252
            ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
4253
            _safe_call(_LIB.LGBM_BoosterSaveModelToString(
4254
                self._handle,
4255
                ctypes.c_int(start_iteration),
4256
                ctypes.c_int(num_iteration),
4257
                ctypes.c_int(importance_type_int),
4258
                ctypes.c_int64(actual_len),
4259
4260
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
4261
        ret = string_buffer.value.decode('utf-8')
4262
4263
        ret += _dump_pandas_categorical(self.pandas_categorical)
        return ret
4264

4265
4266
4267
4268
4269
4270
4271
    def dump_model(
        self,
        num_iteration: Optional[int] = None,
        start_iteration: int = 0,
        importance_type: str = 'split',
        object_hook: Optional[Callable[[Dict[str, Any]], Dict[str, Any]]] = None
    ) -> Dict[str, Any]:
Nikita Titov's avatar
Nikita Titov committed
4272
        """Dump Booster to JSON format.
wxchan's avatar
wxchan committed
4273

4274
4275
        Parameters
        ----------
4276
4277
4278
4279
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be dumped.
            If None, if the best iteration exists, it is dumped; otherwise, all iterations are dumped.
            If <= 0, all iterations are dumped.
Nikita Titov's avatar
Nikita Titov committed
4280
        start_iteration : int, optional (default=0)
4281
            Start index of the iteration that should be dumped.
4282
        importance_type : str, optional (default="split")
4283
4284
4285
            What type of feature importance should be dumped.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
4286
4287
4288
4289
4290
4291
4292
4293
4294
        object_hook : callable or None, optional (default=None)
            If not None, ``object_hook`` is a function called while parsing the json
            string returned by the C API. It may be used to alter the json, to store
            specific values while building the json structure. It avoids
            walking through the structure again. It saves a significant amount
            of time if the number of trees is huge.
            Signature is ``def object_hook(node: dict) -> dict``.
            None is equivalent to ``lambda node: node``.
            See documentation of ``json.loads()`` for further details.
4295

wxchan's avatar
wxchan committed
4296
4297
        Returns
        -------
4298
        json_repr : dict
Nikita Titov's avatar
Nikita Titov committed
4299
            JSON format of Booster.
wxchan's avatar
wxchan committed
4300
        """
4301
        if num_iteration is None:
4302
            num_iteration = self.best_iteration
4303
        importance_type_int = _FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
wxchan's avatar
wxchan committed
4304
        buffer_len = 1 << 20
4305
        tmp_out_len = ctypes.c_int64(0)
wxchan's avatar
wxchan committed
4306
        string_buffer = ctypes.create_string_buffer(buffer_len)
4307
        ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
wxchan's avatar
wxchan committed
4308
        _safe_call(_LIB.LGBM_BoosterDumpModel(
4309
            self._handle,
4310
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
4311
            ctypes.c_int(num_iteration),
4312
            ctypes.c_int(importance_type_int),
4313
            ctypes.c_int64(buffer_len),
wxchan's avatar
wxchan committed
4314
            ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
4315
            ptr_string_buffer))
wxchan's avatar
wxchan committed
4316
        actual_len = tmp_out_len.value
4317
        # if buffer length is not long enough, reallocate a buffer
wxchan's avatar
wxchan committed
4318
4319
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
4320
            ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
wxchan's avatar
wxchan committed
4321
            _safe_call(_LIB.LGBM_BoosterDumpModel(
4322
                self._handle,
4323
                ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
4324
                ctypes.c_int(num_iteration),
4325
                ctypes.c_int(importance_type_int),
4326
                ctypes.c_int64(actual_len),
wxchan's avatar
wxchan committed
4327
                ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
4328
                ptr_string_buffer))
4329
        ret = json.loads(string_buffer.value.decode('utf-8'), object_hook=object_hook)
4330
        ret['pandas_categorical'] = json.loads(json.dumps(self.pandas_categorical,
4331
                                                          default=_json_default_with_numpy))
4332
        return ret
wxchan's avatar
wxchan committed
4333

4334
4335
    def predict(
        self,
4336
        data: _LGBM_PredictDataType,
4337
4338
4339
4340
4341
4342
4343
4344
        start_iteration: int = 0,
        num_iteration: Optional[int] = None,
        raw_score: bool = False,
        pred_leaf: bool = False,
        pred_contrib: bool = False,
        data_has_header: bool = False,
        validate_features: bool = False,
        **kwargs: Any
4345
    ) -> Union[np.ndarray, scipy.sparse.spmatrix, List[scipy.sparse.spmatrix]]:
4346
        """Make a prediction.
wxchan's avatar
wxchan committed
4347
4348
4349

        Parameters
        ----------
4350
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
4351
            Data source for prediction.
4352
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
4353
        start_iteration : int, optional (default=0)
4354
            Start index of the iteration to predict.
4355
            If <= 0, starts from the first iteration.
4356
        num_iteration : int or None, optional (default=None)
4357
4358
4359
4360
            Total number of iterations used in the prediction.
            If None, if the best iteration exists and start_iteration <= 0, the best iteration is used;
            otherwise, all iterations from ``start_iteration`` are used (no limits).
            If <= 0, all iterations from ``start_iteration`` are used (no limits).
4361
4362
4363
4364
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        pred_leaf : bool, optional (default=False)
            Whether to predict leaf index.
4365
4366
        pred_contrib : bool, optional (default=False)
            Whether to predict feature contributions.
4367

Nikita Titov's avatar
Nikita Titov committed
4368
4369
4370
4371
4372
4373
4374
            .. note::

                If you want to get more explanations for your model's predictions using SHAP values,
                like SHAP interaction values,
                you can install the shap package (https://github.com/slundberg/shap).
                Note that unlike the shap package, with ``pred_contrib`` we return a matrix with an extra
                column, where the last column is the expected value.
4375

4376
4377
        data_has_header : bool, optional (default=False)
            Whether the data has header.
4378
            Used only if data is str.
4379
4380
4381
        validate_features : bool, optional (default=False)
            If True, ensure that the features used to predict match the ones used to train.
            Used only if data is pandas DataFrame.
4382
4383
        **kwargs
            Other parameters for the prediction.
wxchan's avatar
wxchan committed
4384
4385
4386

        Returns
        -------
4387
        result : numpy array, scipy.sparse or list of scipy.sparse
4388
            Prediction result.
4389
            Can be sparse or a list of sparse objects (each element represents predictions for one class) for feature contributions (when ``pred_contrib=True``).
wxchan's avatar
wxchan committed
4390
        """
4391
4392
4393
4394
        predictor = _InnerPredictor.from_booster(
            booster=self,
            pred_parameter=deepcopy(kwargs),
        )
4395
        if num_iteration is None:
4396
            if start_iteration <= 0:
4397
4398
4399
                num_iteration = self.best_iteration
            else:
                num_iteration = -1
4400
4401
4402
4403
4404
4405
4406
4407
4408
4409
        return predictor.predict(
            data=data,
            start_iteration=start_iteration,
            num_iteration=num_iteration,
            raw_score=raw_score,
            pred_leaf=pred_leaf,
            pred_contrib=pred_contrib,
            data_has_header=data_has_header,
            validate_features=validate_features
        )
wxchan's avatar
wxchan committed
4410

4411
4412
    def refit(
        self,
4413
        data: _LGBM_TrainDataType,
4414
        label: _LGBM_LabelType,
4415
4416
        decay_rate: float = 0.9,
        reference: Optional[Dataset] = None,
4417
4418
4419
        weight: Optional[_LGBM_WeightType] = None,
        group: Optional[_LGBM_GroupType] = None,
        init_score: Optional[_LGBM_InitScoreType] = None,
4420
4421
        feature_name: _LGBM_FeatureNameConfiguration = 'auto',
        categorical_feature: _LGBM_CategoricalFeatureConfiguration = 'auto',
4422
4423
4424
        dataset_params: Optional[Dict[str, Any]] = None,
        free_raw_data: bool = True,
        validate_features: bool = False,
4425
        **kwargs
4426
    ) -> "Booster":
Guolin Ke's avatar
Guolin Ke committed
4427
4428
4429
4430
        """Refit the existing Booster by new data.

        Parameters
        ----------
4431
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array
Guolin Ke's avatar
Guolin Ke committed
4432
            Data source for refit.
4433
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
4434
        label : list, numpy 1-D array, pandas Series / one-column DataFrame, pyarrow Array or pyarrow ChunkedArray
Guolin Ke's avatar
Guolin Ke committed
4435
4436
            Label for refit.
        decay_rate : float, optional (default=0.9)
4437
4438
            Decay rate of refit,
            will use ``leaf_output = decay_rate * old_leaf_output + (1.0 - decay_rate) * new_leaf_output`` to refit trees.
4439
4440
        reference : Dataset or None, optional (default=None)
            Reference for ``data``.
4441
4442
4443

            .. versionadded:: 4.0.0

4444
        weight : list, numpy 1-D array, pandas Series, pyarrow Array, pyarrow ChunkedArray or None, optional (default=None)
4445
            Weight for each ``data`` instance. Weights should be non-negative.
4446
4447
4448

            .. versionadded:: 4.0.0

4449
        group : list, numpy 1-D array, pandas Series, pyarrow Array, pyarrow ChunkedArray or None, optional (default=None)
4450
4451
4452
4453
4454
            Group/query size for ``data``.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
4455
4456
4457

            .. versionadded:: 4.0.0

4458
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), pyarrow Array, pyarrow ChunkedArray, pyarrow Table (for multi-class task) or None, optional (default=None)
4459
            Init score for ``data``.
4460
4461
4462

            .. versionadded:: 4.0.0

4463
4464
4465
        feature_name : list of str, or 'auto', optional (default="auto")
            Feature names for ``data``.
            If 'auto' and data is pandas DataFrame, data columns names are used.
4466
4467
4468

            .. versionadded:: 4.0.0

4469
4470
4471
4472
4473
        categorical_feature : list of str or int, or 'auto', optional (default="auto")
            Categorical features for ``data``.
            If list of int, interpreted as indices.
            If list of str, interpreted as feature names (need to specify ``feature_name`` as well).
            If 'auto' and data is pandas DataFrame, pandas unordered categorical columns are used.
4474
            All values in categorical features will be cast to int32 and thus should be less than int32 max value (2147483647).
4475
4476
4477
            Large values could be memory consuming. Consider using consecutive integers starting from zero.
            All negative values in categorical features will be treated as missing values.
            The output cannot be monotonically constrained with respect to a categorical feature.
4478
            Floating point numbers in categorical features will be rounded towards 0.
4479
4480
4481

            .. versionadded:: 4.0.0

4482
4483
        dataset_params : dict or None, optional (default=None)
            Other parameters for Dataset ``data``.
4484
4485
4486

            .. versionadded:: 4.0.0

4487
4488
        free_raw_data : bool, optional (default=True)
            If True, raw data is freed after constructing inner Dataset for ``data``.
4489
4490
4491

            .. versionadded:: 4.0.0

4492
4493
4494
        validate_features : bool, optional (default=False)
            If True, ensure that the features used to refit the model match the original ones.
            Used only if data is pandas DataFrame.
4495
4496
4497

            .. versionadded:: 4.0.0

4498
4499
        **kwargs
            Other parameters for refit.
4500
            These parameters will be passed to ``predict`` method.
Guolin Ke's avatar
Guolin Ke committed
4501
4502
4503
4504
4505
4506

        Returns
        -------
        result : Booster
            Refitted Booster.
        """
4507
4508
        if self.__set_objective_to_none:
            raise LightGBMError('Cannot refit due to null objective function.')
4509
4510
        if dataset_params is None:
            dataset_params = {}
4511
4512
4513
4514
        predictor = _InnerPredictor.from_booster(
            booster=self,
            pred_parameter=deepcopy(kwargs)
        )
4515
        leaf_preds: np.ndarray = predictor.predict(  # type: ignore[assignment]
4516
4517
4518
4519
4520
            data=data,
            start_iteration=-1,
            pred_leaf=True,
            validate_features=validate_features
        )
4521
        nrow, ncol = leaf_preds.shape
4522
        out_is_linear = ctypes.c_int(0)
4523
        _safe_call(_LIB.LGBM_BoosterGetLinear(
4524
            self._handle,
4525
            ctypes.byref(out_is_linear)))
Nikita Titov's avatar
Nikita Titov committed
4526
4527
4528
4529
4530
        new_params = _choose_param_value(
            main_param_name="linear_tree",
            params=self.params,
            default_value=None
        )
4531
        new_params["linear_tree"] = bool(out_is_linear.value)
4532
4533
4534
4535
4536
4537
4538
4539
4540
4541
4542
4543
4544
        new_params.update(dataset_params)
        train_set = Dataset(
            data=data,
            label=label,
            reference=reference,
            weight=weight,
            group=group,
            init_score=init_score,
            feature_name=feature_name,
            categorical_feature=categorical_feature,
            params=new_params,
            free_raw_data=free_raw_data,
        )
4545
        new_params['refit_decay_rate'] = decay_rate
4546
        new_booster = Booster(new_params, train_set)
Guolin Ke's avatar
Guolin Ke committed
4547
4548
        # Copy models
        _safe_call(_LIB.LGBM_BoosterMerge(
4549
4550
            new_booster._handle,
            predictor._handle))
Guolin Ke's avatar
Guolin Ke committed
4551
        leaf_preds = leaf_preds.reshape(-1)
4552
        ptr_data, _, _ = _c_int_array(leaf_preds)
Guolin Ke's avatar
Guolin Ke committed
4553
        _safe_call(_LIB.LGBM_BoosterRefit(
4554
            new_booster._handle,
Guolin Ke's avatar
Guolin Ke committed
4555
            ptr_data,
4556
4557
            ctypes.c_int32(nrow),
            ctypes.c_int32(ncol)))
4558
        new_booster._network = self._network
Guolin Ke's avatar
Guolin Ke committed
4559
4560
        return new_booster

4561
    def get_leaf_output(self, tree_id: int, leaf_id: int) -> float:
4562
4563
4564
4565
4566
4567
4568
4569
4570
4571
4572
4573
4574
4575
        """Get the output of a leaf.

        Parameters
        ----------
        tree_id : int
            The index of the tree.
        leaf_id : int
            The index of the leaf in the tree.

        Returns
        -------
        result : float
            The output of the leaf.
        """
4576
4577
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetLeafValue(
4578
            self._handle,
4579
4580
4581
4582
4583
            ctypes.c_int(tree_id),
            ctypes.c_int(leaf_id),
            ctypes.byref(ret)))
        return ret.value

4584
4585
4586
4587
4588
4589
4590
4591
    def set_leaf_output(
        self,
        tree_id: int,
        leaf_id: int,
        value: float,
    ) -> 'Booster':
        """Set the output of a leaf.

4592
4593
        .. versionadded:: 4.0.0

4594
4595
4596
4597
4598
4599
4600
4601
4602
4603
4604
4605
4606
4607
4608
4609
        Parameters
        ----------
        tree_id : int
            The index of the tree.
        leaf_id : int
            The index of the leaf in the tree.
        value : float
            Value to set as the output of the leaf.

        Returns
        -------
        self : Booster
            Booster with the leaf output set.
        """
        _safe_call(
            _LIB.LGBM_BoosterSetLeafValue(
4610
                self._handle,
4611
4612
4613
4614
4615
4616
4617
                ctypes.c_int(tree_id),
                ctypes.c_int(leaf_id),
                ctypes.c_double(value)
            )
        )
        return self

4618
    def num_feature(self) -> int:
4619
4620
4621
4622
4623
4624
4625
        """Get number of features.

        Returns
        -------
        num_feature : int
            The number of features.
        """
4626
4627
        out_num_feature = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetNumFeature(
4628
            self._handle,
4629
4630
4631
            ctypes.byref(out_num_feature)))
        return out_num_feature.value

4632
    def feature_name(self) -> List[str]:
4633
        """Get names of features.
wxchan's avatar
wxchan committed
4634
4635
4636

        Returns
        -------
4637
        result : list of str
4638
            List with names of features.
wxchan's avatar
wxchan committed
4639
        """
4640
        num_feature = self.num_feature()
4641
        # Get name of features
wxchan's avatar
wxchan committed
4642
        tmp_out_len = ctypes.c_int(0)
4643
4644
        reserved_string_buffer_size = 255
        required_string_buffer_size = ctypes.c_size_t(0)
4645
        string_buffers = [ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(num_feature)]
4646
        ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))  # type: ignore[misc]
wxchan's avatar
wxchan committed
4647
        _safe_call(_LIB.LGBM_BoosterGetFeatureNames(
4648
            self._handle,
4649
            ctypes.c_int(num_feature),
wxchan's avatar
wxchan committed
4650
            ctypes.byref(tmp_out_len),
4651
            ctypes.c_size_t(reserved_string_buffer_size),
4652
            ctypes.byref(required_string_buffer_size),
wxchan's avatar
wxchan committed
4653
4654
4655
            ptr_string_buffers))
        if num_feature != tmp_out_len.value:
            raise ValueError("Length of feature names doesn't equal with num_feature")
4656
4657
4658
4659
        actual_string_buffer_size = required_string_buffer_size.value
        # if buffer length is not long enough, reallocate buffers
        if reserved_string_buffer_size < actual_string_buffer_size:
            string_buffers = [ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(num_feature)]
4660
            ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))  # type: ignore[misc]
4661
            _safe_call(_LIB.LGBM_BoosterGetFeatureNames(
4662
                self._handle,
4663
4664
4665
4666
4667
                ctypes.c_int(num_feature),
                ctypes.byref(tmp_out_len),
                ctypes.c_size_t(actual_string_buffer_size),
                ctypes.byref(required_string_buffer_size),
                ptr_string_buffers))
4668
        return [string_buffers[i].value.decode('utf-8') for i in range(num_feature)]
wxchan's avatar
wxchan committed
4669

4670
4671
4672
4673
4674
    def feature_importance(
        self,
        importance_type: str = 'split',
        iteration: Optional[int] = None
    ) -> np.ndarray:
4675
        """Get feature importances.
4676

4677
4678
        Parameters
        ----------
4679
        importance_type : str, optional (default="split")
4680
4681
4682
            How the importance is calculated.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
4683
4684
4685
4686
        iteration : int or None, optional (default=None)
            Limit number of iterations in the feature importance calculation.
            If None, if the best iteration exists, it is used; otherwise, all trees are used.
            If <= 0, all trees are used (no limits).
4687

4688
4689
        Returns
        -------
4690
4691
        result : numpy array
            Array with feature importances.
4692
        """
4693
4694
        if iteration is None:
            iteration = self.best_iteration
4695
        importance_type_int = _FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
4696
        result = np.empty(self.num_feature(), dtype=np.float64)
4697
        _safe_call(_LIB.LGBM_BoosterFeatureImportance(
4698
            self._handle,
4699
4700
4701
            ctypes.c_int(iteration),
            ctypes.c_int(importance_type_int),
            result.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
4702
        if importance_type_int == _C_API_FEATURE_IMPORTANCE_SPLIT:
4703
            return result.astype(np.int32)
4704
4705
        else:
            return result
4706

4707
4708
4709
4710
4711
4712
    def get_split_value_histogram(
        self,
        feature: Union[int, str],
        bins: Optional[Union[int, str]] = None,
        xgboost_style: bool = False
    ) -> Union[Tuple[np.ndarray, np.ndarray], np.ndarray, pd_DataFrame]:
4713
4714
4715
4716
        """Get split value histogram for the specified feature.

        Parameters
        ----------
4717
        feature : int or str
4718
4719
            The feature name or index the histogram is calculated for.
            If int, interpreted as index.
4720
            If str, interpreted as name.
4721

Nikita Titov's avatar
Nikita Titov committed
4722
4723
4724
            .. warning::

                Categorical features are not supported.
4725

4726
        bins : int, str or None, optional (default=None)
4727
4728
4729
            The maximum number of bins.
            If None, or int and > number of unique split values and ``xgboost_style=True``,
            the number of bins equals number of unique split values.
4730
            If str, it should be one from the list of the supported values by ``numpy.histogram()`` function.
4731
4732
4733
4734
4735
4736
4737
4738
4739
4740
4741
4742
4743
4744
        xgboost_style : bool, optional (default=False)
            Whether the returned result should be in the same form as it is in XGBoost.
            If False, the returned value is tuple of 2 numpy arrays as it is in ``numpy.histogram()`` function.
            If True, the returned value is matrix, in which the first column is the right edges of non-empty bins
            and the second one is the histogram values.

        Returns
        -------
        result_tuple : tuple of 2 numpy arrays
            If ``xgboost_style=False``, the values of the histogram of used splitting values for the specified feature
            and the bin edges.
        result_array_like : numpy array or pandas DataFrame (if pandas is installed)
            If ``xgboost_style=True``, the histogram of used splitting values for the specified feature.
        """
4745
        def add(root: Dict[str, Any]) -> None:
4746
4747
            """Recursively add thresholds."""
            if 'split_index' in root:  # non-leaf
4748
                if feature_names is not None and isinstance(feature, str):
4749
4750
4751
4752
                    split_feature = feature_names[root['split_feature']]
                else:
                    split_feature = root['split_feature']
                if split_feature == feature:
4753
                    if isinstance(root['threshold'], str):
4754
4755
4756
                        raise LightGBMError('Cannot compute split value histogram for the categorical feature')
                    else:
                        values.append(root['threshold'])
4757
4758
4759
4760
4761
4762
                add(root['left_child'])
                add(root['right_child'])

        model = self.dump_model()
        feature_names = model.get('feature_names')
        tree_infos = model['tree_info']
4763
        values: List[float] = []
4764
4765
4766
        for tree_info in tree_infos:
            add(tree_info['tree_structure'])

4767
        if bins is None or isinstance(bins, int) and xgboost_style:
4768
4769
4770
4771
4772
4773
4774
            n_unique = len(np.unique(values))
            bins = max(min(n_unique, bins) if bins is not None else n_unique, 1)
        hist, bin_edges = np.histogram(values, bins=bins)
        if xgboost_style:
            ret = np.column_stack((bin_edges[1:], hist))
            ret = ret[ret[:, 1] > 0]
            if PANDAS_INSTALLED:
4775
                return pd_DataFrame(ret, columns=['SplitValue', 'Count'])
4776
4777
4778
4779
4780
            else:
                return ret
        else:
            return hist, bin_edges

4781
4782
4783
4784
    def __inner_eval(
        self,
        data_name: str,
        data_idx: int,
4785
        feval: Optional[Union[_LGBM_CustomEvalFunction, List[_LGBM_CustomEvalFunction]]]
4786
    ) -> List[_LGBM_BoosterEvalMethodResultType]:
4787
        """Evaluate training or validation data."""
wxchan's avatar
wxchan committed
4788
        if data_idx >= self.__num_dataset:
4789
            raise ValueError("Data_idx should be smaller than number of dataset")
wxchan's avatar
wxchan committed
4790
4791
4792
        self.__get_eval_info()
        ret = []
        if self.__num_inner_eval > 0:
4793
            result = np.empty(self.__num_inner_eval, dtype=np.float64)
Guolin Ke's avatar
Guolin Ke committed
4794
            tmp_out_len = ctypes.c_int(0)
wxchan's avatar
wxchan committed
4795
            _safe_call(_LIB.LGBM_BoosterGetEval(
4796
                self._handle,
Guolin Ke's avatar
Guolin Ke committed
4797
                ctypes.c_int(data_idx),
wxchan's avatar
wxchan committed
4798
                ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
4799
                result.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
wxchan's avatar
wxchan committed
4800
            if tmp_out_len.value != self.__num_inner_eval:
4801
                raise ValueError("Wrong length of eval results")
4802
            for i in range(self.__num_inner_eval):
4803
4804
                ret.append((data_name, self.__name_inner_eval[i],
                            result[i], self.__higher_better_inner_eval[i]))
4805
4806
        if callable(feval):
            feval = [feval]
wxchan's avatar
wxchan committed
4807
4808
4809
4810
4811
        if feval is not None:
            if data_idx == 0:
                cur_data = self.train_set
            else:
                cur_data = self.valid_sets[data_idx - 1]
4812
4813
4814
4815
4816
4817
4818
4819
4820
            for eval_function in feval:
                if eval_function is None:
                    continue
                feval_ret = eval_function(self.__inner_predict(data_idx), cur_data)
                if isinstance(feval_ret, list):
                    for eval_name, val, is_higher_better in feval_ret:
                        ret.append((data_name, eval_name, val, is_higher_better))
                else:
                    eval_name, val, is_higher_better = feval_ret
wxchan's avatar
wxchan committed
4821
4822
4823
                    ret.append((data_name, eval_name, val, is_higher_better))
        return ret

4824
    def __inner_predict(self, data_idx: int) -> np.ndarray:
4825
        """Predict for training and validation dataset."""
wxchan's avatar
wxchan committed
4826
        if data_idx >= self.__num_dataset:
4827
            raise ValueError("Data_idx should be smaller than number of dataset")
wxchan's avatar
wxchan committed
4828
4829
4830
4831
4832
        if self.__inner_predict_buffer[data_idx] is None:
            if data_idx == 0:
                n_preds = self.train_set.num_data() * self.__num_class
            else:
                n_preds = self.valid_sets[data_idx - 1].num_data() * self.__num_class
4833
            self.__inner_predict_buffer[data_idx] = np.empty(n_preds, dtype=np.float64)
4834
        # avoid to predict many time in one iteration
wxchan's avatar
wxchan committed
4835
4836
        if not self.__is_predicted_cur_iter[data_idx]:
            tmp_out_len = ctypes.c_int64(0)
4837
            data_ptr = self.__inner_predict_buffer[data_idx].ctypes.data_as(ctypes.POINTER(ctypes.c_double))  # type: ignore[union-attr]
wxchan's avatar
wxchan committed
4838
            _safe_call(_LIB.LGBM_BoosterGetPredict(
4839
                self._handle,
Guolin Ke's avatar
Guolin Ke committed
4840
                ctypes.c_int(data_idx),
wxchan's avatar
wxchan committed
4841
4842
                ctypes.byref(tmp_out_len),
                data_ptr))
4843
            if tmp_out_len.value != len(self.__inner_predict_buffer[data_idx]):  # type: ignore[arg-type]
4844
                raise ValueError(f"Wrong length of predict results for data {data_idx}")
wxchan's avatar
wxchan committed
4845
            self.__is_predicted_cur_iter[data_idx] = True
4846
        result: np.ndarray = self.__inner_predict_buffer[data_idx]  # type: ignore[assignment]
4847
4848
4849
4850
        if self.__num_class > 1:
            num_data = result.size // self.__num_class
            result = result.reshape(num_data, self.__num_class, order='F')
        return result
wxchan's avatar
wxchan committed
4851

4852
    def __get_eval_info(self) -> None:
4853
        """Get inner evaluation count and names."""
wxchan's avatar
wxchan committed
4854
4855
        if self.__need_reload_eval_info:
            self.__need_reload_eval_info = False
Guolin Ke's avatar
Guolin Ke committed
4856
            out_num_eval = ctypes.c_int(0)
4857
            # Get num of inner evals
wxchan's avatar
wxchan committed
4858
            _safe_call(_LIB.LGBM_BoosterGetEvalCounts(
4859
                self._handle,
wxchan's avatar
wxchan committed
4860
4861
4862
                ctypes.byref(out_num_eval)))
            self.__num_inner_eval = out_num_eval.value
            if self.__num_inner_eval > 0:
4863
                # Get name of eval metrics
Guolin Ke's avatar
Guolin Ke committed
4864
                tmp_out_len = ctypes.c_int(0)
4865
4866
4867
                reserved_string_buffer_size = 255
                required_string_buffer_size = ctypes.c_size_t(0)
                string_buffers = [
4868
                    ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(self.__num_inner_eval)
4869
                ]
4870
                ptr_string_buffers = (ctypes.c_char_p * self.__num_inner_eval)(*map(ctypes.addressof, string_buffers))  # type: ignore[misc]
wxchan's avatar
wxchan committed
4871
                _safe_call(_LIB.LGBM_BoosterGetEvalNames(
4872
                    self._handle,
4873
                    ctypes.c_int(self.__num_inner_eval),
wxchan's avatar
wxchan committed
4874
                    ctypes.byref(tmp_out_len),
4875
                    ctypes.c_size_t(reserved_string_buffer_size),
4876
                    ctypes.byref(required_string_buffer_size),
wxchan's avatar
wxchan committed
4877
4878
                    ptr_string_buffers))
                if self.__num_inner_eval != tmp_out_len.value:
4879
                    raise ValueError("Length of eval names doesn't equal with num_evals")
4880
4881
4882
4883
4884
4885
                actual_string_buffer_size = required_string_buffer_size.value
                # if buffer length is not long enough, reallocate buffers
                if reserved_string_buffer_size < actual_string_buffer_size:
                    string_buffers = [
                        ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(self.__num_inner_eval)
                    ]
4886
                    ptr_string_buffers = (ctypes.c_char_p * self.__num_inner_eval)(*map(ctypes.addressof, string_buffers))  # type: ignore[misc]
4887
                    _safe_call(_LIB.LGBM_BoosterGetEvalNames(
4888
                        self._handle,
4889
4890
4891
4892
4893
4894
4895
4896
4897
4898
4899
                        ctypes.c_int(self.__num_inner_eval),
                        ctypes.byref(tmp_out_len),
                        ctypes.c_size_t(actual_string_buffer_size),
                        ctypes.byref(required_string_buffer_size),
                        ptr_string_buffers))
                self.__name_inner_eval = [
                    string_buffers[i].value.decode('utf-8') for i in range(self.__num_inner_eval)
                ]
                self.__higher_better_inner_eval = [
                    name.startswith(('auc', 'ndcg@', 'map@', 'average_precision')) for name in self.__name_inner_eval
                ]