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# coding: utf-8
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"""Wrapper for C API of LightGBM."""
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import abc
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import ctypes
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import inspect
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import json
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import warnings
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from collections import OrderedDict
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from copy import deepcopy
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from enum import Enum
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from functools import wraps
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from os import SEEK_END, environ
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from os.path import getsize
from pathlib import Path
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from tempfile import NamedTemporaryFile
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from typing import TYPE_CHECKING, Any, Callable, Dict, Iterable, List, Optional, Set, Tuple, Union
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import numpy as np
import scipy.sparse

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from .compat import PANDAS_INSTALLED, concat, dt_DataTable, pd_CategoricalDtype, pd_DataFrame, pd_Series
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from .libpath import find_lib_path

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if TYPE_CHECKING:
    from typing import Literal

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__all__ = [
    'Booster',
    'Dataset',
    'LGBMDeprecationWarning',
    'LightGBMError',
    'register_logger',
    'Sequence',
]

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_BoosterHandle = ctypes.c_void_p
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_DatasetHandle = ctypes.c_void_p
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_ctypes_int_ptr = Union[
    "ctypes._Pointer[ctypes.c_int32]",
    "ctypes._Pointer[ctypes.c_int64]"
]
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_ctypes_int_array = Union[
    "ctypes.Array[ctypes._Pointer[ctypes.c_int32]]",
    "ctypes.Array[ctypes._Pointer[ctypes.c_int64]]"
]
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_ctypes_float_ptr = Union[
    "ctypes._Pointer[ctypes.c_float]",
    "ctypes._Pointer[ctypes.c_double]"
]
_ctypes_float_array = Union[
    "ctypes.Array[ctypes._Pointer[ctypes.c_float]]",
    "ctypes.Array[ctypes._Pointer[ctypes.c_double]]"
]
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_LGBM_EvalFunctionResultType = Tuple[str, float, bool]
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_LGBM_BoosterBestScoreType = Dict[str, Dict[str, float]]
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_LGBM_BoosterEvalMethodResultType = Tuple[str, str, float, bool]
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_LGBM_CategoricalFeatureConfiguration = Union[List[str], List[int], "Literal['auto']"]
_LGBM_FeatureNameConfiguration = Union[List[str], "Literal['auto']"]
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_LGBM_GroupType = Union[
    List[float],
    List[int],
    np.ndarray,
    pd_Series
]
_LGBM_InitScoreType = Union[
    List[float],
    List[List[float]],
    np.ndarray,
    pd_Series,
    pd_DataFrame,
]
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_LGBM_TrainDataType = Union[
    str,
    Path,
    np.ndarray,
    pd_DataFrame,
    dt_DataTable,
    scipy.sparse.spmatrix,
    "Sequence",
    List["Sequence"],
    List[np.ndarray]
]
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_LGBM_LabelType = Union[
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    List[float],
    List[int],
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    np.ndarray,
    pd_Series,
    pd_DataFrame
]
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_LGBM_PredictDataType = Union[
    str,
    Path,
    np.ndarray,
    pd_DataFrame,
    dt_DataTable,
    scipy.sparse.spmatrix
]
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_LGBM_WeightType = Union[
    List[float],
    List[int],
    np.ndarray,
    pd_Series
]
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ZERO_THRESHOLD = 1e-35


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def _is_zero(x: float) -> bool:
    return -ZERO_THRESHOLD <= x <= ZERO_THRESHOLD


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def _get_sample_count(total_nrow: int, params: str) -> int:
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    sample_cnt = ctypes.c_int(0)
    _safe_call(_LIB.LGBM_GetSampleCount(
        ctypes.c_int32(total_nrow),
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        _c_str(params),
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        ctypes.byref(sample_cnt),
    ))
    return sample_cnt.value

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class _MissingType(Enum):
    NONE = 'None'
    NAN = 'NaN'
    ZERO = 'Zero'


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class _DummyLogger:
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    def info(self, msg: str) -> None:
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        print(msg)  # noqa: T201
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    def warning(self, msg: str) -> None:
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        warnings.warn(msg, stacklevel=3)


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_LOGGER: Any = _DummyLogger()
_INFO_METHOD_NAME = "info"
_WARNING_METHOD_NAME = "warning"
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def _has_method(logger: Any, method_name: str) -> bool:
    return callable(getattr(logger, method_name, None))


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def register_logger(
    logger: Any, info_method_name: str = "info", warning_method_name: str = "warning"
) -> None:
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    """Register custom logger.

    Parameters
    ----------
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    logger : Any
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        Custom logger.
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    info_method_name : str, optional (default="info")
        Method used to log info messages.
    warning_method_name : str, optional (default="warning")
        Method used to log warning messages.
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    """
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    if not _has_method(logger, info_method_name) or not _has_method(logger, warning_method_name):
        raise TypeError(
            f"Logger must provide '{info_method_name}' and '{warning_method_name}' method"
        )

    global _LOGGER, _INFO_METHOD_NAME, _WARNING_METHOD_NAME
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    _LOGGER = logger
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    _INFO_METHOD_NAME = info_method_name
    _WARNING_METHOD_NAME = warning_method_name
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def _normalize_native_string(func: Callable[[str], None]) -> Callable[[str], None]:
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    """Join log messages from native library which come by chunks."""
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    msg_normalized: List[str] = []
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    @wraps(func)
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    def wrapper(msg: str) -> None:
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        nonlocal msg_normalized
        if msg.strip() == '':
            msg = ''.join(msg_normalized)
            msg_normalized = []
            return func(msg)
        else:
            msg_normalized.append(msg)

    return wrapper


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def _log_info(msg: str) -> None:
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    getattr(_LOGGER, _INFO_METHOD_NAME)(msg)
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def _log_warning(msg: str) -> None:
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    getattr(_LOGGER, _WARNING_METHOD_NAME)(msg)
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@_normalize_native_string
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def _log_native(msg: str) -> None:
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    getattr(_LOGGER, _INFO_METHOD_NAME)(msg)
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def _log_callback(msg: bytes) -> None:
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    """Redirect logs from native library into Python."""
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    _log_native(str(msg.decode('utf-8')))
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def _load_lib() -> ctypes.CDLL:
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    """Load LightGBM library."""
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    lib_path = find_lib_path()
    lib = ctypes.cdll.LoadLibrary(lib_path[0])
    lib.LGBM_GetLastError.restype = ctypes.c_char_p
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    callback = ctypes.CFUNCTYPE(None, ctypes.c_char_p)
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    lib.callback = callback(_log_callback)  # type: ignore[attr-defined]
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    if lib.LGBM_RegisterLogCallback(lib.callback) != 0:
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        raise LightGBMError(lib.LGBM_GetLastError().decode('utf-8'))
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    return lib

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# we don't need lib_lightgbm while building docs
_LIB: ctypes.CDLL
if environ.get('LIGHTGBM_BUILD_DOC', False):
    from unittest.mock import Mock  # isort: skip
    _LIB = Mock(ctypes.CDLL)  # type: ignore
else:
    _LIB = _load_lib()
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_NUMERIC_TYPES = (int, float, bool)
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_ArrayLike = Union[List, np.ndarray, pd_Series]
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def _safe_call(ret: int) -> None:
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    """Check the return value from C API call.

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    Parameters
    ----------
    ret : int
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        The return value from C API calls.
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    """
    if ret != 0:
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        raise LightGBMError(_LIB.LGBM_GetLastError().decode('utf-8'))
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def _is_numeric(obj: Any) -> bool:
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    """Check whether object is a number or not, include numpy number, etc."""
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    try:
        float(obj)
        return True
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    except (TypeError, ValueError):
        # TypeError: obj is not a string or a number
        # ValueError: invalid literal
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        return False

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def _is_numpy_1d_array(data: Any) -> bool:
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    """Check whether data is a numpy 1-D array."""
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    return isinstance(data, np.ndarray) and len(data.shape) == 1
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def _is_numpy_column_array(data: Any) -> bool:
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    """Check whether data is a column numpy array."""
    if not isinstance(data, np.ndarray):
        return False
    shape = data.shape
    return len(shape) == 2 and shape[1] == 1


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def _cast_numpy_array_to_dtype(array: np.ndarray, dtype: "np.typing.DTypeLike") -> np.ndarray:
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    """Cast numpy array to given dtype."""
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    if array.dtype == dtype:
        return array
    return array.astype(dtype=dtype, copy=False)


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def _is_1d_list(data: Any) -> bool:
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    """Check whether data is a 1-D list."""
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    return isinstance(data, list) and (not data or _is_numeric(data[0]))
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def _is_1d_collection(data: Any) -> bool:
    """Check whether data is a 1-D collection."""
    return (
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        _is_numpy_1d_array(data)
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        or _is_numpy_column_array(data)
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        or _is_1d_list(data)
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        or isinstance(data, pd_Series)
    )


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def _list_to_1d_numpy(
    data: Any,
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    dtype: "np.typing.DTypeLike",
    name: str
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) -> np.ndarray:
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    """Convert data to numpy 1-D array."""
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    if _is_numpy_1d_array(data):
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        return _cast_numpy_array_to_dtype(data, dtype)
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    elif _is_numpy_column_array(data):
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        _log_warning('Converting column-vector to 1d array')
        array = data.ravel()
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        return _cast_numpy_array_to_dtype(array, dtype)
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    elif _is_1d_list(data):
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        return np.array(data, dtype=dtype, copy=False)
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    elif isinstance(data, pd_Series):
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        _check_for_bad_pandas_dtypes(data.to_frame().dtypes)
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        return np.array(data, dtype=dtype, copy=False)  # SparseArray should be supported as well
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    else:
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        raise TypeError(f"Wrong type({type(data).__name__}) for {name}.\n"
                        "It should be list, numpy 1-D array or pandas Series")
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def _is_numpy_2d_array(data: Any) -> bool:
    """Check whether data is a numpy 2-D array."""
    return isinstance(data, np.ndarray) and len(data.shape) == 2 and data.shape[1] > 1


def _is_2d_list(data: Any) -> bool:
    """Check whether data is a 2-D list."""
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    return isinstance(data, list) and len(data) > 0 and _is_1d_list(data[0])
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def _is_2d_collection(data: Any) -> bool:
    """Check whether data is a 2-D collection."""
    return (
        _is_numpy_2d_array(data)
        or _is_2d_list(data)
        or isinstance(data, pd_DataFrame)
    )


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def _data_to_2d_numpy(
    data: Any,
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    dtype: "np.typing.DTypeLike",
    name: str
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) -> np.ndarray:
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    """Convert data to numpy 2-D array."""
    if _is_numpy_2d_array(data):
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        return _cast_numpy_array_to_dtype(data, dtype)
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    if _is_2d_list(data):
        return np.array(data, dtype=dtype)
    if isinstance(data, pd_DataFrame):
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        _check_for_bad_pandas_dtypes(data.dtypes)
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        return _cast_numpy_array_to_dtype(data.values, dtype)
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    raise TypeError(f"Wrong type({type(data).__name__}) for {name}.\n"
                    "It should be list of lists, numpy 2-D array or pandas DataFrame")


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def _cfloat32_array_to_numpy(cptr: "ctypes._Pointer", length: int) -> np.ndarray:
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    """Convert a ctypes float pointer array to a numpy array."""
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    if isinstance(cptr, ctypes.POINTER(ctypes.c_float)):
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        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
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    else:
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        raise RuntimeError('Expected float pointer')
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def _cfloat64_array_to_numpy(cptr: "ctypes._Pointer", length: int) -> np.ndarray:
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    """Convert a ctypes double pointer array to a numpy array."""
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    if isinstance(cptr, ctypes.POINTER(ctypes.c_double)):
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        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
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    else:
        raise RuntimeError('Expected double pointer')

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def _cint32_array_to_numpy(cptr: "ctypes._Pointer", length: int) -> np.ndarray:
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    """Convert a ctypes int pointer array to a numpy array."""
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    if isinstance(cptr, ctypes.POINTER(ctypes.c_int32)):
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        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
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    else:
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        raise RuntimeError('Expected int32 pointer')


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def _cint64_array_to_numpy(cptr: "ctypes._Pointer", length: int) -> np.ndarray:
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    """Convert a ctypes int pointer array to a numpy array."""
    if isinstance(cptr, ctypes.POINTER(ctypes.c_int64)):
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        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
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    else:
        raise RuntimeError('Expected int64 pointer')
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def _c_str(string: str) -> ctypes.c_char_p:
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    """Convert a Python string to C string."""
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    return ctypes.c_char_p(string.encode('utf-8'))

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def _c_array(ctype: type, values: List[Any]) -> ctypes.Array:
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    """Convert a Python array to C array."""
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    return (ctype * len(values))(*values)  # type: ignore[operator]
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def _json_default_with_numpy(obj: Any) -> Any:
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    """Convert numpy classes to JSON serializable objects."""
    if isinstance(obj, (np.integer, np.floating, np.bool_)):
        return obj.item()
    elif isinstance(obj, np.ndarray):
        return obj.tolist()
    else:
        return obj


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def _to_string(x: Union[int, float, str, List]) -> str:
    if isinstance(x, list):
        val_list = ",".join(str(val) for val in x)
        return f"[{val_list}]"
    else:
        return str(x)


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def _param_dict_to_str(data: Optional[Dict[str, Any]]) -> str:
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    """Convert Python dictionary to string, which is passed to C API."""
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    if data is None or not data:
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        return ""
    pairs = []
    for key, val in data.items():
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        if isinstance(val, (list, tuple, set)) or _is_numpy_1d_array(val):
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            pairs.append(f"{key}={','.join(map(_to_string, val))}")
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        elif isinstance(val, (str, Path, _NUMERIC_TYPES)) or _is_numeric(val):
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            pairs.append(f"{key}={val}")
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        elif val is not None:
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            raise TypeError(f'Unknown type of parameter:{key}, got:{type(val).__name__}')
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    return ' '.join(pairs)
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class _TempFile:
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    """Proxy class to workaround errors on Windows."""

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    def __enter__(self):
        with NamedTemporaryFile(prefix="lightgbm_tmp_", delete=True) as f:
            self.name = f.name
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            self.path = Path(self.name)
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        return self
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    def __exit__(self, exc_type, exc_val, exc_tb):
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        if self.path.is_file():
            self.path.unlink()
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class LightGBMError(Exception):
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    """Error thrown by LightGBM."""

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    pass


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# DeprecationWarning is not shown by default, so let's create our own with higher level
class LGBMDeprecationWarning(UserWarning):
    """Custom deprecation warning."""

    pass


class _ConfigAliases:
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    # lazy evaluation to allow import without dynamic library, e.g., for docs generation
    aliases = None

    @staticmethod
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    def _get_all_param_aliases() -> Dict[str, List[str]]:
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        buffer_len = 1 << 20
        tmp_out_len = ctypes.c_int64(0)
        string_buffer = ctypes.create_string_buffer(buffer_len)
        ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
        _safe_call(_LIB.LGBM_DumpParamAliases(
            ctypes.c_int64(buffer_len),
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
        # if buffer length is not long enough, re-allocate a buffer
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
            ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
            _safe_call(_LIB.LGBM_DumpParamAliases(
                ctypes.c_int64(actual_len),
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
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        return json.loads(
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            string_buffer.value.decode('utf-8'),
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            object_hook=lambda obj: {k: [k] + v for k, v in obj.items()}
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        )
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    @classmethod
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    def get(cls, *args) -> Set[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
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        ret = set()
        for i in args:
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            ret.update(cls.get_sorted(i))
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        return ret

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    @classmethod
    def get_sorted(cls, name: str) -> List[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
        return cls.aliases.get(name, [name])

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    @classmethod
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    def get_by_alias(cls, *args) -> Set[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
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        ret = set(args)
        for arg in args:
            for aliases in cls.aliases.values():
                if arg in aliases:
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                    ret.update(aliases)
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                    break
        return ret

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def _choose_param_value(main_param_name: str, params: Dict[str, Any], default_value: Any) -> Dict[str, Any]:
    """Get a single parameter value, accounting for aliases.

    Parameters
    ----------
    main_param_name : str
        Name of the main parameter to get a value for. One of the keys of ``_ConfigAliases``.
    params : dict
        Dictionary of LightGBM parameters.
    default_value : Any
        Default value to use for the parameter, if none is found in ``params``.

    Returns
    -------
    params : dict
        A ``params`` dict with exactly one value for ``main_param_name``, and all aliases ``main_param_name`` removed.
        If both ``main_param_name`` and one or more aliases for it are found, the value of ``main_param_name`` will be preferred.
    """
    # avoid side effects on passed-in parameters
    params = deepcopy(params)

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    aliases = _ConfigAliases.get_sorted(main_param_name)
    aliases = [a for a in aliases if a != main_param_name]
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    # if main_param_name was provided, keep that value and remove all aliases
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    if main_param_name in params.keys():
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        for param in aliases:
            params.pop(param, None)
        return params
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    # if main param name was not found, search for an alias
    for param in aliases:
        if param in params.keys():
            params[main_param_name] = params[param]
            break
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    if main_param_name in params.keys():
        for param in aliases:
            params.pop(param, None)
        return params

    # neither of main_param_name, aliases were found
    params[main_param_name] = default_value
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    return params


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_MAX_INT32 = (1 << 31) - 1
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"""Macro definition of data type in C API of LightGBM"""
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_C_API_DTYPE_FLOAT32 = 0
_C_API_DTYPE_FLOAT64 = 1
_C_API_DTYPE_INT32 = 2
_C_API_DTYPE_INT64 = 3
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"""Matrix is row major in Python"""
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_C_API_IS_ROW_MAJOR = 1
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"""Macro definition of prediction type in C API of LightGBM"""
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_C_API_PREDICT_NORMAL = 0
_C_API_PREDICT_RAW_SCORE = 1
_C_API_PREDICT_LEAF_INDEX = 2
_C_API_PREDICT_CONTRIB = 3
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"""Macro definition of sparse matrix type"""
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_C_API_MATRIX_TYPE_CSR = 0
_C_API_MATRIX_TYPE_CSC = 1
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"""Macro definition of feature importance type"""
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_C_API_FEATURE_IMPORTANCE_SPLIT = 0
_C_API_FEATURE_IMPORTANCE_GAIN = 1
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"""Data type of data field"""
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_FIELD_TYPE_MAPPER = {
    "label": _C_API_DTYPE_FLOAT32,
    "weight": _C_API_DTYPE_FLOAT32,
    "init_score": _C_API_DTYPE_FLOAT64,
    "group": _C_API_DTYPE_INT32
}
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"""String name to int feature importance type mapper"""
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_FEATURE_IMPORTANCE_TYPE_MAPPER = {
    "split": _C_API_FEATURE_IMPORTANCE_SPLIT,
    "gain": _C_API_FEATURE_IMPORTANCE_GAIN
}
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def _convert_from_sliced_object(data: np.ndarray) -> np.ndarray:
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    """Fix the memory of multi-dimensional sliced object."""
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    if isinstance(data, np.ndarray) and isinstance(data.base, np.ndarray):
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        if not data.flags.c_contiguous:
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            _log_warning("Usage of np.ndarray subset (sliced data) is not recommended "
                         "due to it will double the peak memory cost in LightGBM.")
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            return np.copy(data)
    return data


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def _c_float_array(
    data: np.ndarray
) -> Tuple[_ctypes_float_ptr, int, np.ndarray]:
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    """Get pointer of float numpy array / list."""
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    if _is_1d_list(data):
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        data = np.array(data, copy=False)
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    if _is_numpy_1d_array(data):
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        data = _convert_from_sliced_object(data)
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        assert data.flags.c_contiguous
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        ptr_data: _ctypes_float_ptr
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        if data.dtype == np.float32:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_float))
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            type_data = _C_API_DTYPE_FLOAT32
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        elif data.dtype == np.float64:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_double))
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            type_data = _C_API_DTYPE_FLOAT64
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        else:
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            raise TypeError(f"Expected np.float32 or np.float64, met type({data.dtype})")
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    else:
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        raise TypeError(f"Unknown type({type(data).__name__})")
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    return (ptr_data, type_data, data)  # return `data` to avoid the temporary copy is freed
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def _c_int_array(
    data: np.ndarray
) -> Tuple[_ctypes_int_ptr, int, np.ndarray]:
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    """Get pointer of int numpy array / list."""
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    if _is_1d_list(data):
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        data = np.array(data, copy=False)
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    if _is_numpy_1d_array(data):
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        data = _convert_from_sliced_object(data)
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        assert data.flags.c_contiguous
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        ptr_data: _ctypes_int_ptr
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        if data.dtype == np.int32:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_int32))
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            type_data = _C_API_DTYPE_INT32
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        elif data.dtype == np.int64:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_int64))
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            type_data = _C_API_DTYPE_INT64
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        else:
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            raise TypeError(f"Expected np.int32 or np.int64, met type({data.dtype})")
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    else:
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        raise TypeError(f"Unknown type({type(data).__name__})")
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    return (ptr_data, type_data, data)  # return `data` to avoid the temporary copy is freed
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def _is_allowed_numpy_dtype(dtype: type) -> bool:
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    float128 = getattr(np, 'float128', type(None))
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    return (
        issubclass(dtype, (np.integer, np.floating, np.bool_))
        and not issubclass(dtype, (np.timedelta64, float128))
    )
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def _check_for_bad_pandas_dtypes(pandas_dtypes_series: pd_Series) -> None:
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    bad_pandas_dtypes = [
        f'{column_name}: {pandas_dtype}'
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        for column_name, pandas_dtype in pandas_dtypes_series.items()
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        if not _is_allowed_numpy_dtype(pandas_dtype.type)
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    ]
    if bad_pandas_dtypes:
        raise ValueError('pandas dtypes must be int, float or bool.\n'
                         f'Fields with bad pandas dtypes: {", ".join(bad_pandas_dtypes)}')
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def _data_from_pandas(
    data,
    feature_name: Optional[_LGBM_FeatureNameConfiguration],
    categorical_feature: Optional[_LGBM_CategoricalFeatureConfiguration],
    pandas_categorical: Optional[List[List]]
):
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    if isinstance(data, pd_DataFrame):
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        if len(data.shape) != 2 or data.shape[0] < 1:
            raise ValueError('Input data must be 2 dimensional and non empty.')
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        if feature_name == 'auto' or feature_name is None:
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            data = data.rename(columns=str, copy=False)
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        cat_cols = [col for col, dtype in zip(data.columns, data.dtypes) if isinstance(dtype, pd_CategoricalDtype)]
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        cat_cols_not_ordered = [col for col in cat_cols if not data[col].cat.ordered]
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        if pandas_categorical is None:  # train dataset
            pandas_categorical = [list(data[col].cat.categories) for col in cat_cols]
        else:
            if len(cat_cols) != len(pandas_categorical):
                raise ValueError('train and valid dataset categorical_feature do not match.')
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            for col, category in zip(cat_cols, pandas_categorical):
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                if list(data[col].cat.categories) != list(category):
                    data[col] = data[col].cat.set_categories(category)
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        if len(cat_cols):  # cat_cols is list
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            data = data.copy(deep=False)  # not alter origin DataFrame
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            data[cat_cols] = data[cat_cols].apply(lambda x: x.cat.codes).replace({-1: np.nan})
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        if categorical_feature is not None:
            if feature_name is None:
                feature_name = list(data.columns)
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            if categorical_feature == 'auto':  # use cat cols from DataFrame
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                categorical_feature = cat_cols_not_ordered
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            else:  # use cat cols specified by user
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                categorical_feature = list(categorical_feature)  # type: ignore[assignment]
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        if feature_name == 'auto':
            feature_name = list(data.columns)
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        _check_for_bad_pandas_dtypes(data.dtypes)
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        df_dtypes = [dtype.type for dtype in data.dtypes]
        df_dtypes.append(np.float32)  # so that the target dtype considers floats
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        target_dtype = np.result_type(*df_dtypes)
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        try:
            # most common case (no nullable dtypes)
            data = data.to_numpy(dtype=target_dtype, copy=False)
        except TypeError:
            # 1.0 <= pd version < 1.1 and nullable dtypes, least common case
            # raises error because array is casted to type(pd.NA) and there's no na_value argument
            data = data.astype(target_dtype, copy=False).values
        except ValueError:
            # data has nullable dtypes, but we can specify na_value argument and copy will be made
            data = data.to_numpy(dtype=target_dtype, na_value=np.nan)
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    else:
        if feature_name == 'auto':
            feature_name = None
        if categorical_feature == 'auto':
            categorical_feature = None
    return data, feature_name, categorical_feature, pandas_categorical
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def _dump_pandas_categorical(
    pandas_categorical: Optional[List[List]],
    file_name: Optional[Union[str, Path]] = None
) -> str:
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    categorical_json = json.dumps(pandas_categorical, default=_json_default_with_numpy)
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    pandas_str = f'\npandas_categorical:{categorical_json}\n'
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    if file_name is not None:
        with open(file_name, 'a') as f:
            f.write(pandas_str)
    return pandas_str


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def _load_pandas_categorical(
    file_name: Optional[Union[str, Path]] = None,
    model_str: Optional[str] = None
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) -> Optional[List[List]]:
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    pandas_key = 'pandas_categorical:'
    offset = -len(pandas_key)
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    if file_name is not None:
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        max_offset = -getsize(file_name)
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        with open(file_name, 'rb') as f:
            while True:
                if offset < max_offset:
                    offset = max_offset
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                f.seek(offset, SEEK_END)
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                lines = f.readlines()
                if len(lines) >= 2:
                    break
                offset *= 2
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        last_line = lines[-1].decode('utf-8').strip()
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        if not last_line.startswith(pandas_key):
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            last_line = lines[-2].decode('utf-8').strip()
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    elif model_str is not None:
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        idx = model_str.rfind('\n', 0, offset)
        last_line = model_str[idx:].strip()
    if last_line.startswith(pandas_key):
        return json.loads(last_line[len(pandas_key):])
    else:
        return None
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class Sequence(abc.ABC):
    """
    Generic data access interface.

    Object should support the following operations:

    .. code-block::

        # Get total row number.
        >>> len(seq)
        # Random access by row index. Used for data sampling.
        >>> seq[10]
        # Range data access. Used to read data in batch when constructing Dataset.
        >>> seq[0:100]
        # Optionally specify batch_size to control range data read size.
        >>> seq.batch_size

    - With random access, **data sampling does not need to go through all data**.
    - With range data access, there's **no need to read all data into memory thus reduce memory usage**.

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    .. versionadded:: 3.3.0

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    Attributes
    ----------
    batch_size : int
        Default size of a batch.
    """

    batch_size = 4096  # Defaults to read 4K rows in each batch.

    @abc.abstractmethod
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    def __getitem__(self, idx: Union[int, slice, List[int]]) -> np.ndarray:
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        """Return data for given row index.

        A basic implementation should look like this:

        .. code-block:: python

            if isinstance(idx, numbers.Integral):
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                return self._get_one_line(idx)
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            elif isinstance(idx, slice):
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                return np.stack([self._get_one_line(i) for i in range(idx.start, idx.stop)])
            elif isinstance(idx, list):
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                # Only required if using ``Dataset.subset()``.
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                return np.array([self._get_one_line(i) for i in idx])
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            else:
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                raise TypeError(f"Sequence index must be integer, slice or list, got {type(idx).__name__}")
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        Parameters
        ----------
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        idx : int, slice[int], list[int]
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            Item index.

        Returns
        -------
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        result : numpy 1-D array or numpy 2-D array
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            1-D array if idx is int, 2-D array if idx is slice or list.
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        """
        raise NotImplementedError("Sub-classes of lightgbm.Sequence must implement __getitem__()")

    @abc.abstractmethod
    def __len__(self) -> int:
        """Return row count of this sequence."""
        raise NotImplementedError("Sub-classes of lightgbm.Sequence must implement __len__()")


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class _InnerPredictor:
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    """_InnerPredictor of LightGBM.

    Not exposed to user.
    Used only for prediction, usually used for continued training.

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    .. note::

        Can be converted from Booster, but cannot be converted to Booster.
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    """
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    def __init__(
        self,
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        booster_handle: _BoosterHandle,
        pandas_categorical: Optional[List[List]],
        pred_parameter: Dict[str, Any],
        manage_handle: bool
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    ):
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        """Initialize the _InnerPredictor.
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        Parameters
        ----------
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        booster_handle : object
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            Handle of Booster.
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        pandas_categorical : list of list, or None
            If provided, list of categories for ``pandas`` categorical columns.
            Where the ``i``th element of the list contains the categories for the ``i``th categorical feature.
        pred_parameter : dict
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            Other parameters for the prediction.
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        manage_handle : bool
            If ``True``, free the corresponding Booster on the C++ side when this Python object is deleted.
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        """
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        self._handle = booster_handle
        self.__is_manage_handle = manage_handle
        self.pandas_categorical = pandas_categorical
        self.pred_parameter = _param_dict_to_str(pred_parameter)

        out_num_class = ctypes.c_int(0)
        _safe_call(
            _LIB.LGBM_BoosterGetNumClasses(
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                self._handle,
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                ctypes.byref(out_num_class)
            )
        )
        self.num_class = out_num_class.value
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    @classmethod
    def from_booster(
        cls,
        booster: "Booster",
        pred_parameter: Dict[str, Any]
    ) -> "_InnerPredictor":
        """Initialize an ``_InnerPredictor`` from a ``Booster``.

        Parameters
        ----------
        booster : Booster
            Booster.
        pred_parameter : dict
            Other parameters for the prediction.
        """
        out_cur_iter = ctypes.c_int(0)
        _safe_call(
            _LIB.LGBM_BoosterGetCurrentIteration(
                booster._handle,
                ctypes.byref(out_cur_iter)
            )
        )
        return cls(
            booster_handle=booster._handle,
            pandas_categorical=booster.pandas_categorical,
            pred_parameter=pred_parameter,
            manage_handle=False
        )

    @classmethod
    def from_model_file(
        cls,
        model_file: Union[str, Path],
        pred_parameter: Dict[str, Any]
    ) -> "_InnerPredictor":
        """Initialize an ``_InnerPredictor`` from a text file containing a LightGBM model.

        Parameters
        ----------
        model_file : str or pathlib.Path
            Path to the model file.
        pred_parameter : dict
            Other parameters for the prediction.
        """
        booster_handle = ctypes.c_void_p()
        out_num_iterations = ctypes.c_int(0)
        _safe_call(
            _LIB.LGBM_BoosterCreateFromModelfile(
                _c_str(str(model_file)),
                ctypes.byref(out_num_iterations),
                ctypes.byref(booster_handle)
            )
        )
        return cls(
            booster_handle=booster_handle,
            pandas_categorical=_load_pandas_categorical(file_name=model_file),
            pred_parameter=pred_parameter,
            manage_handle=True
        )
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    def __del__(self) -> None:
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        try:
            if self.__is_manage_handle:
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                _safe_call(_LIB.LGBM_BoosterFree(self._handle))
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        except AttributeError:
            pass
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    def __getstate__(self) -> Dict[str, Any]:
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        this = self.__dict__.copy()
        this.pop('handle', None)
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        this.pop('_handle', None)
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        return this

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    def predict(
        self,
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        data: _LGBM_PredictDataType,
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        start_iteration: int = 0,
        num_iteration: int = -1,
        raw_score: bool = False,
        pred_leaf: bool = False,
        pred_contrib: bool = False,
        data_has_header: bool = False,
        validate_features: bool = False
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    ) -> Union[np.ndarray, scipy.sparse.spmatrix, List[scipy.sparse.spmatrix]]:
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        """Predict logic.
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        Parameters
        ----------
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        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
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            Data source for prediction.
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            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
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        start_iteration : int, optional (default=0)
            Start index of the iteration to predict.
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        num_iteration : int, optional (default=-1)
            Iteration used for prediction.
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        pred_leaf : bool, optional (default=False)
            Whether to predict leaf index.
        pred_contrib : bool, optional (default=False)
            Whether to predict feature contributions.
        data_has_header : bool, optional (default=False)
            Whether data has header.
            Used only for txt data.
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        validate_features : bool, optional (default=False)
            If True, ensure that the features used to predict match the ones used to train.
            Used only if data is pandas DataFrame.
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            .. versionadded:: 4.0.0

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        Returns
        -------
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        result : numpy array, scipy.sparse or list of scipy.sparse
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            Prediction result.
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            Can be sparse or a list of sparse objects (each element represents predictions for one class) for feature contributions (when ``pred_contrib=True``).
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        """
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        if isinstance(data, Dataset):
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            raise TypeError("Cannot use Dataset instance for prediction, please use raw data instead")
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        elif isinstance(data, pd_DataFrame) and validate_features:
            data_names = [str(x) for x in data.columns]
            ptr_names = (ctypes.c_char_p * len(data_names))()
            ptr_names[:] = [x.encode('utf-8') for x in data_names]
            _safe_call(
                _LIB.LGBM_BoosterValidateFeatureNames(
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                    self._handle,
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                    ptr_names,
                    ctypes.c_int(len(data_names)),
                )
            )
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        data = _data_from_pandas(data, None, None, self.pandas_categorical)[0]
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        predict_type = _C_API_PREDICT_NORMAL
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        if raw_score:
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            predict_type = _C_API_PREDICT_RAW_SCORE
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        if pred_leaf:
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            predict_type = _C_API_PREDICT_LEAF_INDEX
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        if pred_contrib:
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            predict_type = _C_API_PREDICT_CONTRIB
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        if isinstance(data, (str, Path)):
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            with _TempFile() as f:
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                _safe_call(_LIB.LGBM_BoosterPredictForFile(
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                    self._handle,
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                    _c_str(str(data)),
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                    ctypes.c_int(data_has_header),
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                    ctypes.c_int(predict_type),
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                    ctypes.c_int(start_iteration),
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                    ctypes.c_int(num_iteration),
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                    _c_str(self.pred_parameter),
                    _c_str(f.name)))
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                preds = np.loadtxt(f.name, dtype=np.float64)
                nrow = preds.shape[0]
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        elif isinstance(data, scipy.sparse.csr_matrix):
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            preds, nrow = self.__pred_for_csr(
                csr=data,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
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        elif isinstance(data, scipy.sparse.csc_matrix):
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            preds, nrow = self.__pred_for_csc(
                csc=data,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
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        elif isinstance(data, np.ndarray):
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            preds, nrow = self.__pred_for_np2d(
                mat=data,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
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        elif isinstance(data, list):
            try:
                data = np.array(data)
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            except BaseException as err:
                raise ValueError('Cannot convert data list to numpy array.') from err
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            preds, nrow = self.__pred_for_np2d(
                mat=data,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
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        elif isinstance(data, dt_DataTable):
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            preds, nrow = self.__pred_for_np2d(
                mat=data.to_numpy(),
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
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        else:
            try:
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                _log_warning('Converting data to scipy sparse matrix.')
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                csr = scipy.sparse.csr_matrix(data)
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            except BaseException as err:
                raise TypeError(f'Cannot predict data for type {type(data).__name__}') from err
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            preds, nrow = self.__pred_for_csr(
                csr=csr,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
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        if pred_leaf:
            preds = preds.astype(np.int32)
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        is_sparse = isinstance(preds, scipy.sparse.spmatrix) or isinstance(preds, list)
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        if not is_sparse and preds.size != nrow:
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            if preds.size % nrow == 0:
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                preds = preds.reshape(nrow, -1)
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            else:
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                raise ValueError(f'Length of predict result ({preds.size}) cannot be divide nrow ({nrow})')
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        return preds

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    def __get_num_preds(
        self,
        start_iteration: int,
        num_iteration: int,
        nrow: int,
        predict_type: int
    ) -> int:
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        """Get size of prediction result."""
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        if nrow > _MAX_INT32:
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            raise LightGBMError('LightGBM cannot perform prediction for data '
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                                f'with number of rows greater than MAX_INT32 ({_MAX_INT32}).\n'
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                                'You can split your data into chunks '
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                                'and then concatenate predictions for them')
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        n_preds = ctypes.c_int64(0)
        _safe_call(_LIB.LGBM_BoosterCalcNumPredict(
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            self._handle,
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            ctypes.c_int(nrow),
            ctypes.c_int(predict_type),
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            ctypes.c_int(start_iteration),
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            ctypes.c_int(num_iteration),
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            ctypes.byref(n_preds)))
        return n_preds.value
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    def __inner_predict_np2d(
        self,
        mat: np.ndarray,
        start_iteration: int,
        num_iteration: int,
        predict_type: int,
        preds: Optional[np.ndarray]
    ) -> Tuple[np.ndarray, int]:
        if mat.dtype == np.float32 or mat.dtype == np.float64:
            data = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
        else:  # change non-float data to float data, need to copy
            data = np.array(mat.reshape(mat.size), dtype=np.float32)
        ptr_data, type_ptr_data, _ = _c_float_array(data)
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        n_preds = self.__get_num_preds(
            start_iteration=start_iteration,
            num_iteration=num_iteration,
            nrow=mat.shape[0],
            predict_type=predict_type
        )
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        if preds is None:
            preds = np.empty(n_preds, dtype=np.float64)
        elif len(preds.shape) != 1 or len(preds) != n_preds:
            raise ValueError("Wrong length of pre-allocated predict array")
        out_num_preds = ctypes.c_int64(0)
        _safe_call(_LIB.LGBM_BoosterPredictForMat(
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            self._handle,
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            ptr_data,
            ctypes.c_int(type_ptr_data),
            ctypes.c_int32(mat.shape[0]),
            ctypes.c_int32(mat.shape[1]),
            ctypes.c_int(_C_API_IS_ROW_MAJOR),
            ctypes.c_int(predict_type),
            ctypes.c_int(start_iteration),
            ctypes.c_int(num_iteration),
            _c_str(self.pred_parameter),
            ctypes.byref(out_num_preds),
            preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
        if n_preds != out_num_preds.value:
            raise ValueError("Wrong length for predict results")
        return preds, mat.shape[0]

    def __pred_for_np2d(
        self,
        mat: np.ndarray,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
    ) -> Tuple[np.ndarray, int]:
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        """Predict for a 2-D numpy matrix."""
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        if len(mat.shape) != 2:
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            raise ValueError('Input numpy.ndarray or list must be 2 dimensional')
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        nrow = mat.shape[0]
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        if nrow > _MAX_INT32:
            sections = np.arange(start=_MAX_INT32, stop=nrow, step=_MAX_INT32)
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            # __get_num_preds() cannot work with nrow > MAX_INT32, so calculate overall number of predictions piecemeal
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            n_preds = [self.__get_num_preds(start_iteration, num_iteration, i, predict_type) for i in np.diff([0] + list(sections) + [nrow])]
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            n_preds_sections = np.array([0] + n_preds, dtype=np.intp).cumsum()
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            preds = np.empty(sum(n_preds), dtype=np.float64)
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            for chunk, (start_idx_pred, end_idx_pred) in zip(np.array_split(mat, sections),
                                                             zip(n_preds_sections, n_preds_sections[1:])):
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                # avoid memory consumption by arrays concatenation operations
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                self.__inner_predict_np2d(
                    mat=chunk,
                    start_iteration=start_iteration,
                    num_iteration=num_iteration,
                    predict_type=predict_type,
                    preds=preds[start_idx_pred:end_idx_pred]
                )
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            return preds, nrow
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        else:
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            return self.__inner_predict_np2d(
                mat=mat,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type,
                preds=None
            )
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    def __create_sparse_native(
        self,
        cs: Union[scipy.sparse.csc_matrix, scipy.sparse.csr_matrix],
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        out_shape: np.ndarray,
        out_ptr_indptr: "ctypes._Pointer",
        out_ptr_indices: "ctypes._Pointer",
        out_ptr_data: "ctypes._Pointer",
        indptr_type: int,
        data_type: int,
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        is_csr: bool
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    ) -> Union[List[scipy.sparse.csc_matrix], List[scipy.sparse.csr_matrix]]:
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        # create numpy array from output arrays
        data_indices_len = out_shape[0]
        indptr_len = out_shape[1]
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        if indptr_type == _C_API_DTYPE_INT32:
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            out_indptr = _cint32_array_to_numpy(out_ptr_indptr, indptr_len)
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        elif indptr_type == _C_API_DTYPE_INT64:
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            out_indptr = _cint64_array_to_numpy(out_ptr_indptr, indptr_len)
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        else:
            raise TypeError("Expected int32 or int64 type for indptr")
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        if data_type == _C_API_DTYPE_FLOAT32:
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            out_data = _cfloat32_array_to_numpy(out_ptr_data, data_indices_len)
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        elif data_type == _C_API_DTYPE_FLOAT64:
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            out_data = _cfloat64_array_to_numpy(out_ptr_data, data_indices_len)
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        else:
            raise TypeError("Expected float32 or float64 type for data")
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        out_indices = _cint32_array_to_numpy(out_ptr_indices, data_indices_len)
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        # break up indptr based on number of rows (note more than one matrix in multiclass case)
        per_class_indptr_shape = cs.indptr.shape[0]
        # for CSC there is extra column added
        if not is_csr:
            per_class_indptr_shape += 1
        out_indptr_arrays = np.split(out_indptr, out_indptr.shape[0] / per_class_indptr_shape)
        # reformat output into a csr or csc matrix or list of csr or csc matrices
        cs_output_matrices = []
        offset = 0
        for cs_indptr in out_indptr_arrays:
            matrix_indptr_len = cs_indptr[cs_indptr.shape[0] - 1]
            cs_indices = out_indices[offset + cs_indptr[0]:offset + matrix_indptr_len]
            cs_data = out_data[offset + cs_indptr[0]:offset + matrix_indptr_len]
            offset += matrix_indptr_len
            # same shape as input csr or csc matrix except extra column for expected value
            cs_shape = [cs.shape[0], cs.shape[1] + 1]
            # note: make sure we copy data as it will be deallocated next
            if is_csr:
                cs_output_matrices.append(scipy.sparse.csr_matrix((cs_data, cs_indices, cs_indptr), cs_shape))
            else:
                cs_output_matrices.append(scipy.sparse.csc_matrix((cs_data, cs_indices, cs_indptr), cs_shape))
        # free the temporary native indptr, indices, and data
        _safe_call(_LIB.LGBM_BoosterFreePredictSparse(out_ptr_indptr, out_ptr_indices, out_ptr_data,
                                                      ctypes.c_int(indptr_type), ctypes.c_int(data_type)))
        if len(cs_output_matrices) == 1:
            return cs_output_matrices[0]
        return cs_output_matrices

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    def __inner_predict_csr(
        self,
        csr: scipy.sparse.csr_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int,
        preds: Optional[np.ndarray]
    ) -> Tuple[np.ndarray, int]:
        nrow = len(csr.indptr) - 1
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        n_preds = self.__get_num_preds(
            start_iteration=start_iteration,
            num_iteration=num_iteration,
            nrow=nrow,
            predict_type=predict_type
        )
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        if preds is None:
            preds = np.empty(n_preds, dtype=np.float64)
        elif len(preds.shape) != 1 or len(preds) != n_preds:
            raise ValueError("Wrong length of pre-allocated predict array")
        out_num_preds = ctypes.c_int64(0)
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        ptr_indptr, type_ptr_indptr, _ = _c_int_array(csr.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csr.data)
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        assert csr.shape[1] <= _MAX_INT32
        csr_indices = csr.indices.astype(np.int32, copy=False)

        _safe_call(_LIB.LGBM_BoosterPredictForCSR(
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            self._handle,
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            ptr_indptr,
            ctypes.c_int(type_ptr_indptr),
            csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
            ptr_data,
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csr.indptr)),
            ctypes.c_int64(len(csr.data)),
            ctypes.c_int64(csr.shape[1]),
            ctypes.c_int(predict_type),
            ctypes.c_int(start_iteration),
            ctypes.c_int(num_iteration),
            _c_str(self.pred_parameter),
            ctypes.byref(out_num_preds),
            preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
        if n_preds != out_num_preds.value:
            raise ValueError("Wrong length for predict results")
        return preds, nrow

    def __inner_predict_csr_sparse(
        self,
        csr: scipy.sparse.csr_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
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    ) -> Tuple[Union[List[scipy.sparse.csc_matrix], List[scipy.sparse.csr_matrix]], int]:
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        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csr.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csr.data)
        csr_indices = csr.indices.astype(np.int32, copy=False)
        matrix_type = _C_API_MATRIX_TYPE_CSR
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        out_ptr_indptr: _ctypes_int_ptr
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        if type_ptr_indptr == _C_API_DTYPE_INT32:
            out_ptr_indptr = ctypes.POINTER(ctypes.c_int32)()
        else:
            out_ptr_indptr = ctypes.POINTER(ctypes.c_int64)()
        out_ptr_indices = ctypes.POINTER(ctypes.c_int32)()
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        out_ptr_data: _ctypes_float_ptr
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        if type_ptr_data == _C_API_DTYPE_FLOAT32:
            out_ptr_data = ctypes.POINTER(ctypes.c_float)()
        else:
            out_ptr_data = ctypes.POINTER(ctypes.c_double)()
        out_shape = np.empty(2, dtype=np.int64)
        _safe_call(_LIB.LGBM_BoosterPredictSparseOutput(
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            self._handle,
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            ptr_indptr,
            ctypes.c_int(type_ptr_indptr),
            csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
            ptr_data,
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csr.indptr)),
            ctypes.c_int64(len(csr.data)),
            ctypes.c_int64(csr.shape[1]),
            ctypes.c_int(predict_type),
            ctypes.c_int(start_iteration),
            ctypes.c_int(num_iteration),
            _c_str(self.pred_parameter),
            ctypes.c_int(matrix_type),
            out_shape.ctypes.data_as(ctypes.POINTER(ctypes.c_int64)),
            ctypes.byref(out_ptr_indptr),
            ctypes.byref(out_ptr_indices),
            ctypes.byref(out_ptr_data)))
        matrices = self.__create_sparse_native(
            cs=csr,
            out_shape=out_shape,
            out_ptr_indptr=out_ptr_indptr,
            out_ptr_indices=out_ptr_indices,
            out_ptr_data=out_ptr_data,
            indptr_type=type_ptr_indptr,
            data_type=type_ptr_data,
            is_csr=True
        )
        nrow = len(csr.indptr) - 1
        return matrices, nrow

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    def __pred_for_csr(
        self,
        csr: scipy.sparse.csr_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
    ) -> Tuple[np.ndarray, int]:
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        """Predict for a CSR data."""
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        if predict_type == _C_API_PREDICT_CONTRIB:
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            return self.__inner_predict_csr_sparse(
                csr=csr,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
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        nrow = len(csr.indptr) - 1
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        if nrow > _MAX_INT32:
            sections = [0] + list(np.arange(start=_MAX_INT32, stop=nrow, step=_MAX_INT32)) + [nrow]
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            # __get_num_preds() cannot work with nrow > MAX_INT32, so calculate overall number of predictions piecemeal
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            n_preds = [self.__get_num_preds(start_iteration, num_iteration, i, predict_type) for i in np.diff(sections)]
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            n_preds_sections = np.array([0] + n_preds, dtype=np.intp).cumsum()
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            preds = np.empty(sum(n_preds), dtype=np.float64)
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            for (start_idx, end_idx), (start_idx_pred, end_idx_pred) in zip(zip(sections, sections[1:]),
                                                                            zip(n_preds_sections, n_preds_sections[1:])):
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                # avoid memory consumption by arrays concatenation operations
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                self.__inner_predict_csr(
                    csr=csr[start_idx:end_idx],
                    start_iteration=start_iteration,
                    num_iteration=num_iteration,
                    predict_type=predict_type,
                    preds=preds[start_idx_pred:end_idx_pred]
                )
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            return preds, nrow
        else:
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            return self.__inner_predict_csr(
                csr=csr,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type,
                preds=None
            )

    def __inner_predict_sparse_csc(
        self,
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        csc: scipy.sparse.csc_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
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    ):
        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csc.data)
        csc_indices = csc.indices.astype(np.int32, copy=False)
        matrix_type = _C_API_MATRIX_TYPE_CSC
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        out_ptr_indptr: _ctypes_int_ptr
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        if type_ptr_indptr == _C_API_DTYPE_INT32:
            out_ptr_indptr = ctypes.POINTER(ctypes.c_int32)()
        else:
            out_ptr_indptr = ctypes.POINTER(ctypes.c_int64)()
        out_ptr_indices = ctypes.POINTER(ctypes.c_int32)()
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        out_ptr_data: _ctypes_float_ptr
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        if type_ptr_data == _C_API_DTYPE_FLOAT32:
            out_ptr_data = ctypes.POINTER(ctypes.c_float)()
        else:
            out_ptr_data = ctypes.POINTER(ctypes.c_double)()
        out_shape = np.empty(2, dtype=np.int64)
        _safe_call(_LIB.LGBM_BoosterPredictSparseOutput(
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            self._handle,
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            ptr_indptr,
            ctypes.c_int(type_ptr_indptr),
            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
            ptr_data,
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
            ctypes.c_int(predict_type),
            ctypes.c_int(start_iteration),
            ctypes.c_int(num_iteration),
            _c_str(self.pred_parameter),
            ctypes.c_int(matrix_type),
            out_shape.ctypes.data_as(ctypes.POINTER(ctypes.c_int64)),
            ctypes.byref(out_ptr_indptr),
            ctypes.byref(out_ptr_indices),
            ctypes.byref(out_ptr_data)))
        matrices = self.__create_sparse_native(
            cs=csc,
            out_shape=out_shape,
            out_ptr_indptr=out_ptr_indptr,
            out_ptr_indices=out_ptr_indices,
            out_ptr_data=out_ptr_data,
            indptr_type=type_ptr_indptr,
            data_type=type_ptr_data,
            is_csr=False
        )
        nrow = csc.shape[0]
        return matrices, nrow
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    def __pred_for_csc(
        self,
        csc: scipy.sparse.csc_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
    ) -> Tuple[np.ndarray, int]:
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        """Predict for a CSC data."""
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        nrow = csc.shape[0]
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        if nrow > _MAX_INT32:
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            return self.__pred_for_csr(
                csr=csc.tocsr(),
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
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        if predict_type == _C_API_PREDICT_CONTRIB:
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            return self.__inner_predict_sparse_csc(
                csc=csc,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
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        n_preds = self.__get_num_preds(
            start_iteration=start_iteration,
            num_iteration=num_iteration,
            nrow=nrow,
            predict_type=predict_type
        )
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        preds = np.empty(n_preds, dtype=np.float64)
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        out_num_preds = ctypes.c_int64(0)

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        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csc.data)
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        assert csc.shape[0] <= _MAX_INT32
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        csc_indices = csc.indices.astype(np.int32, copy=False)
1478

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        _safe_call(_LIB.LGBM_BoosterPredictForCSC(
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            self._handle,
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            ptr_indptr,
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            ctypes.c_int(type_ptr_indptr),
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            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
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            ptr_data,
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            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
            ctypes.c_int(predict_type),
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            ctypes.c_int(start_iteration),
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            ctypes.c_int(num_iteration),
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            _c_str(self.pred_parameter),
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            ctypes.byref(out_num_preds),
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            preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
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        if n_preds != out_num_preds.value:
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            raise ValueError("Wrong length for predict results")
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        return preds, nrow

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    def current_iteration(self) -> int:
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        """Get the index of the current iteration.

        Returns
        -------
        cur_iter : int
            The index of the current iteration.
        """
        out_cur_iter = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetCurrentIteration(
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            self._handle,
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            ctypes.byref(out_cur_iter)))
        return out_cur_iter.value

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class Dataset:
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    """Dataset in LightGBM."""
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    def __init__(
        self,
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        data: _LGBM_TrainDataType,
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        label: Optional[_LGBM_LabelType] = None,
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        reference: Optional["Dataset"] = None,
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        weight: Optional[_LGBM_WeightType] = None,
        group: Optional[_LGBM_GroupType] = None,
        init_score: Optional[_LGBM_InitScoreType] = None,
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        feature_name: _LGBM_FeatureNameConfiguration = 'auto',
        categorical_feature: _LGBM_CategoricalFeatureConfiguration = 'auto',
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        params: Optional[Dict[str, Any]] = None,
        free_raw_data: bool = True
    ):
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        """Initialize Dataset.
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        Parameters
        ----------
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        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array
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            Data source of Dataset.
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            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM) or a LightGBM Dataset binary file.
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        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None, optional (default=None)
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            Label of the data.
        reference : Dataset or None, optional (default=None)
            If this is Dataset for validation, training data should be used as reference.
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        weight : list, numpy 1-D array, pandas Series or None, optional (default=None)
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            Weight for each instance. Weights should be non-negative.
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        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
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            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
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            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
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        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None, optional (default=None)
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            Init score for Dataset.
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        feature_name : list of str, or 'auto', optional (default="auto")
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            Feature names.
            If 'auto' and data is pandas DataFrame, data columns names are used.
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        categorical_feature : list of str or int, or 'auto', optional (default="auto")
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            Categorical features.
            If list of int, interpreted as indices.
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            If list of str, interpreted as feature names (need to specify ``feature_name`` as well).
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            If 'auto' and data is pandas DataFrame, pandas unordered categorical columns are used.
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            All values in categorical features will be cast to int32 and thus should be less than int32 max value (2147483647).
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            Large values could be memory consuming. Consider using consecutive integers starting from zero.
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            All negative values in categorical features will be treated as missing values.
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            The output cannot be monotonically constrained with respect to a categorical feature.
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            Floating point numbers in categorical features will be rounded towards 0.
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        params : dict or None, optional (default=None)
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            Other parameters for Dataset.
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        free_raw_data : bool, optional (default=True)
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            If True, raw data is freed after constructing inner Dataset.
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        """
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        self._handle: Optional[_DatasetHandle] = None
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        self.data = data
        self.label = label
        self.reference = reference
        self.weight = weight
        self.group = group
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        self.init_score = init_score
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        self.feature_name: _LGBM_FeatureNameConfiguration = feature_name
        self.categorical_feature: _LGBM_CategoricalFeatureConfiguration = categorical_feature
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        self.params = deepcopy(params)
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        self.free_raw_data = free_raw_data
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        self.used_indices: Optional[List[int]] = None
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        self._need_slice = True
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        self._predictor: Optional[_InnerPredictor] = None
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        self.pandas_categorical = None
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        self._params_back_up = None
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        self.version = 0
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        self._start_row = 0  # Used when pushing rows one by one.
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    def __del__(self) -> None:
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        try:
            self._free_handle()
        except AttributeError:
            pass
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    def _create_sample_indices(self, total_nrow: int) -> np.ndarray:
        """Get an array of randomly chosen indices from this ``Dataset``.

        Indices are sampled without replacement.

        Parameters
        ----------
        total_nrow : int
            Total number of rows to sample from.
            If this value is greater than the value of parameter ``bin_construct_sample_cnt``, only ``bin_construct_sample_cnt`` indices will be used.
            If Dataset has multiple input data, this should be the sum of rows of every file.

        Returns
        -------
        indices : numpy array
            Indices for sampled data.
        """
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        param_str = _param_dict_to_str(self.get_params())
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        sample_cnt = _get_sample_count(total_nrow, param_str)
        indices = np.empty(sample_cnt, dtype=np.int32)
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        ptr_data, _, _ = _c_int_array(indices)
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        actual_sample_cnt = ctypes.c_int32(0)

        _safe_call(_LIB.LGBM_SampleIndices(
            ctypes.c_int32(total_nrow),
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            _c_str(param_str),
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            ptr_data,
            ctypes.byref(actual_sample_cnt),
        ))
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        assert sample_cnt == actual_sample_cnt.value
        return indices
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    def _init_from_ref_dataset(
        self,
        total_nrow: int,
        ref_dataset: _DatasetHandle
    ) -> 'Dataset':
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        """Create dataset from a reference dataset.

        Parameters
        ----------
        total_nrow : int
            Number of rows expected to add to dataset.
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        ref_dataset : object
            Handle of reference dataset to extract metadata from.
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        Returns
        -------
        self : Dataset
            Constructed Dataset object.
        """
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        self._handle = ctypes.c_void_p()
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        _safe_call(_LIB.LGBM_DatasetCreateByReference(
            ref_dataset,
            ctypes.c_int64(total_nrow),
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            ctypes.byref(self._handle),
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        ))
        return self

    def _init_from_sample(
        self,
        sample_data: List[np.ndarray],
        sample_indices: List[np.ndarray],
        sample_cnt: int,
        total_nrow: int,
    ) -> "Dataset":
        """Create Dataset from sampled data structures.

        Parameters
        ----------
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        sample_data : list of numpy array
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            Sample data for each column.
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        sample_indices : list of numpy array
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            Sample data row index for each column.
        sample_cnt : int
            Number of samples.
        total_nrow : int
            Total number of rows for all input files.

        Returns
        -------
        self : Dataset
            Constructed Dataset object.
        """
        ncol = len(sample_indices)
        assert len(sample_data) == ncol, "#sample data column != #column indices"

        for i in range(ncol):
            if sample_data[i].dtype != np.double:
                raise ValueError(f"sample_data[{i}] type {sample_data[i].dtype} is not double")
            if sample_indices[i].dtype != np.int32:
                raise ValueError(f"sample_indices[{i}] type {sample_indices[i].dtype} is not int32")

        # c type: double**
        # each double* element points to start of each column of sample data.
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        sample_col_ptr: _ctypes_float_array = (ctypes.POINTER(ctypes.c_double) * ncol)()
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        # c type int**
        # each int* points to start of indices for each column
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        indices_col_ptr: _ctypes_int_array = (ctypes.POINTER(ctypes.c_int32) * ncol)()
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        for i in range(ncol):
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            sample_col_ptr[i] = _c_float_array(sample_data[i])[0]
            indices_col_ptr[i] = _c_int_array(sample_indices[i])[0]
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        num_per_col = np.array([len(d) for d in sample_indices], dtype=np.int32)
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        num_per_col_ptr, _, _ = _c_int_array(num_per_col)
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        self._handle = ctypes.c_void_p()
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        params_str = _param_dict_to_str(self.get_params())
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        _safe_call(_LIB.LGBM_DatasetCreateFromSampledColumn(
            ctypes.cast(sample_col_ptr, ctypes.POINTER(ctypes.POINTER(ctypes.c_double))),
            ctypes.cast(indices_col_ptr, ctypes.POINTER(ctypes.POINTER(ctypes.c_int32))),
            ctypes.c_int32(ncol),
            num_per_col_ptr,
            ctypes.c_int32(sample_cnt),
            ctypes.c_int32(total_nrow),
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            ctypes.c_int64(total_nrow),
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            _c_str(params_str),
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            ctypes.byref(self._handle),
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        ))
        return self

    def _push_rows(self, data: np.ndarray) -> 'Dataset':
        """Add rows to Dataset.

        Parameters
        ----------
        data : numpy 1-D array
            New data to add to the Dataset.

        Returns
        -------
        self : Dataset
            Dataset object.
        """
        nrow, ncol = data.shape
        data = data.reshape(data.size)
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        data_ptr, data_type, _ = _c_float_array(data)
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        _safe_call(_LIB.LGBM_DatasetPushRows(
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            self._handle,
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            data_ptr,
            data_type,
            ctypes.c_int32(nrow),
            ctypes.c_int32(ncol),
            ctypes.c_int32(self._start_row),
        ))
        self._start_row += nrow
        return self

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    def get_params(self) -> Dict[str, Any]:
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        """Get the used parameters in the Dataset.

        Returns
        -------
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        params : dict
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            The used parameters in this Dataset object.
        """
        if self.params is not None:
            # no min_data, nthreads and verbose in this function
            dataset_params = _ConfigAliases.get("bin_construct_sample_cnt",
                                                "categorical_feature",
                                                "data_random_seed",
                                                "enable_bundle",
                                                "feature_pre_filter",
                                                "forcedbins_filename",
                                                "group_column",
                                                "header",
                                                "ignore_column",
                                                "is_enable_sparse",
                                                "label_column",
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                                                "linear_tree",
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                                                "max_bin",
                                                "max_bin_by_feature",
                                                "min_data_in_bin",
                                                "pre_partition",
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                                                "precise_float_parser",
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                                                "two_round",
                                                "use_missing",
                                                "weight_column",
                                                "zero_as_missing")
            return {k: v for k, v in self.params.items() if k in dataset_params}
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        else:
            return {}
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    def _free_handle(self) -> "Dataset":
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        if self._handle is not None:
            _safe_call(_LIB.LGBM_DatasetFree(self._handle))
            self._handle = None
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        self._need_slice = True
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        if self.used_indices is not None:
            self.data = None
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        return self
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    def _set_init_score_by_predictor(
        self,
        predictor: Optional[_InnerPredictor],
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        data: _LGBM_TrainDataType,
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        used_indices: Optional[Union[List[int], np.ndarray]]
1792
    ) -> "Dataset":
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        data_has_header = False
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        if isinstance(data, (str, Path)) and self.params is not None:
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            # check data has header or not
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            data_has_header = any(self.params.get(alias, False) for alias in _ConfigAliases.get("header"))
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        num_data = self.num_data()
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        if predictor is not None:
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            init_score: Union[np.ndarray, scipy.sparse.spmatrix] = predictor.predict(
                data=data,
                raw_score=True,
                data_has_header=data_has_header
            )
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            init_score = init_score.ravel()
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            if used_indices is not None:
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                assert not self._need_slice
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                if isinstance(data, (str, Path)):
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                    sub_init_score = np.empty(num_data * predictor.num_class, dtype=np.float64)
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                    assert num_data == len(used_indices)
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                    for i in range(len(used_indices)):
                        for j in range(predictor.num_class):
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                            sub_init_score[i * predictor.num_class + j] = init_score[used_indices[i] * predictor.num_class + j]
                    init_score = sub_init_score
            if predictor.num_class > 1:
                # need to regroup init_score
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                new_init_score = np.empty(init_score.size, dtype=np.float64)
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                for i in range(num_data):
                    for j in range(predictor.num_class):
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                        new_init_score[j * num_data + i] = init_score[i * predictor.num_class + j]
                init_score = new_init_score
        elif self.init_score is not None:
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            init_score = np.full_like(self.init_score, fill_value=0.0, dtype=np.float64)
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        else:
            return self
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1825
        self.set_init_score(init_score)
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        return self
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    def _lazy_init(
        self,
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        data: Optional[_LGBM_TrainDataType],
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        label: Optional[_LGBM_LabelType],
        reference: Optional["Dataset"],
        weight: Optional[_LGBM_WeightType],
        group: Optional[_LGBM_GroupType],
        init_score: Optional[_LGBM_InitScoreType],
        predictor: Optional[_InnerPredictor],
        feature_name: _LGBM_FeatureNameConfiguration,
        categorical_feature: _LGBM_CategoricalFeatureConfiguration,
        params: Optional[Dict[str, Any]]
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    ) -> "Dataset":
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        if data is None:
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            self._handle = None
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            return self
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        if reference is not None:
            self.pandas_categorical = reference.pandas_categorical
            categorical_feature = reference.categorical_feature
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        data, feature_name, categorical_feature, self.pandas_categorical = _data_from_pandas(data=data,
                                                                                             feature_name=feature_name,
                                                                                             categorical_feature=categorical_feature,
                                                                                             pandas_categorical=self.pandas_categorical)
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        # process for args
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        params = {} if params is None else params
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        args_names = inspect.signature(self.__class__._lazy_init).parameters.keys()
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        for key in params.keys():
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            if key in args_names:
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                _log_warning(f'{key} keyword has been found in `params` and will be ignored.\n'
                             f'Please use {key} argument of the Dataset constructor to pass this parameter.')
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        # get categorical features
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        if categorical_feature is not None:
            categorical_indices = set()
            feature_dict = {}
            if feature_name is not None:
                feature_dict = {name: i for i, name in enumerate(feature_name)}
            for name in categorical_feature:
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                if isinstance(name, str) and name in feature_dict:
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                    categorical_indices.add(feature_dict[name])
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                elif isinstance(name, int):
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                    categorical_indices.add(name)
                else:
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                    raise TypeError(f"Wrong type({type(name).__name__}) or unknown name({name}) in categorical_feature")
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            if categorical_indices:
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                for cat_alias in _ConfigAliases.get("categorical_feature"):
                    if cat_alias in params:
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                        # If the params[cat_alias] is equal to categorical_indices, do not report the warning.
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                        if not (isinstance(params[cat_alias], list) and set(params[cat_alias]) == categorical_indices):
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                            _log_warning(f'{cat_alias} in param dict is overridden.')
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                        params.pop(cat_alias, None)
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                params['categorical_column'] = sorted(categorical_indices)
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        params_str = _param_dict_to_str(params)
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        self.params = params
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        # process for reference dataset
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        ref_dataset = None
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        if isinstance(reference, Dataset):
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            ref_dataset = reference.construct()._handle
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        elif reference is not None:
            raise TypeError('Reference dataset should be None or dataset instance')
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        # start construct data
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        if isinstance(data, (str, Path)):
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            self._handle = ctypes.c_void_p()
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            _safe_call(_LIB.LGBM_DatasetCreateFromFile(
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                _c_str(str(data)),
                _c_str(params_str),
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                ref_dataset,
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                ctypes.byref(self._handle)))
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        elif isinstance(data, scipy.sparse.csr_matrix):
            self.__init_from_csr(data, params_str, ref_dataset)
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        elif isinstance(data, scipy.sparse.csc_matrix):
            self.__init_from_csc(data, params_str, ref_dataset)
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        elif isinstance(data, np.ndarray):
            self.__init_from_np2d(data, params_str, ref_dataset)
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        elif isinstance(data, list) and len(data) > 0:
            if all(isinstance(x, np.ndarray) for x in data):
                self.__init_from_list_np2d(data, params_str, ref_dataset)
            elif all(isinstance(x, Sequence) for x in data):
                self.__init_from_seqs(data, ref_dataset)
            else:
                raise TypeError('Data list can only be of ndarray or Sequence')
        elif isinstance(data, Sequence):
            self.__init_from_seqs([data], ref_dataset)
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        elif isinstance(data, dt_DataTable):
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            self.__init_from_np2d(data.to_numpy(), params_str, ref_dataset)
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        else:
            try:
                csr = scipy.sparse.csr_matrix(data)
                self.__init_from_csr(csr, params_str, ref_dataset)
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            except BaseException as err:
                raise TypeError(f'Cannot initialize Dataset from {type(data).__name__}') from err
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        if label is not None:
            self.set_label(label)
        if self.get_label() is None:
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            raise ValueError("Label should not be None")
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        if weight is not None:
            self.set_weight(weight)
        if group is not None:
            self.set_group(group)
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        if isinstance(predictor, _InnerPredictor):
            if self._predictor is None and init_score is not None:
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                _log_warning("The init_score will be overridden by the prediction of init_model.")
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            self._set_init_score_by_predictor(
                predictor=predictor,
                data=data,
                used_indices=None
            )
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        elif init_score is not None:
            self.set_init_score(init_score)
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        elif predictor is not None:
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            raise TypeError(f'Wrong predictor type {type(predictor).__name__}')
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        # set feature names
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        return self.set_feature_name(feature_name)
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    @staticmethod
    def _yield_row_from_seqlist(seqs: List[Sequence], indices: Iterable[int]):
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        offset = 0
        seq_id = 0
        seq = seqs[seq_id]
        for row_id in indices:
            assert row_id >= offset, "sample indices are expected to be monotonic"
            while row_id >= offset + len(seq):
                offset += len(seq)
                seq_id += 1
                seq = seqs[seq_id]
            id_in_seq = row_id - offset
            row = seq[id_in_seq]
            yield row if row.flags['OWNDATA'] else row.copy()

    def __sample(self, seqs: List[Sequence], total_nrow: int) -> Tuple[List[np.ndarray], List[np.ndarray]]:
        """Sample data from seqs.

        Mimics behavior in c_api.cpp:LGBM_DatasetCreateFromMats()

        Returns
        -------
            sampled_rows, sampled_row_indices
        """
        indices = self._create_sample_indices(total_nrow)

        # Select sampled rows, transpose to column order.
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        sampled = np.array(list(self._yield_row_from_seqlist(seqs, indices)))
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        sampled = sampled.T

        filtered = []
        filtered_idx = []
        sampled_row_range = np.arange(len(indices), dtype=np.int32)
        for col in sampled:
            col_predicate = (np.abs(col) > ZERO_THRESHOLD) | np.isnan(col)
            filtered_col = col[col_predicate]
            filtered_row_idx = sampled_row_range[col_predicate]

            filtered.append(filtered_col)
            filtered_idx.append(filtered_row_idx)

        return filtered, filtered_idx

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    def __init_from_seqs(
        self,
        seqs: List[Sequence],
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        ref_dataset: Optional[_DatasetHandle]
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    ) -> "Dataset":
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        """
        Initialize data from list of Sequence objects.

        Sequence: Generic Data Access Object
            Supports random access and access by batch if properly defined by user

        Data scheme uniformity are trusted, not checked
        """
        total_nrow = sum(len(seq) for seq in seqs)

        # create validation dataset from ref_dataset
        if ref_dataset is not None:
            self._init_from_ref_dataset(total_nrow, ref_dataset)
        else:
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            param_str = _param_dict_to_str(self.get_params())
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            sample_cnt = _get_sample_count(total_nrow, param_str)

            sample_data, col_indices = self.__sample(seqs, total_nrow)
            self._init_from_sample(sample_data, col_indices, sample_cnt, total_nrow)

        for seq in seqs:
            nrow = len(seq)
            batch_size = getattr(seq, 'batch_size', None) or Sequence.batch_size
            for start in range(0, nrow, batch_size):
                end = min(start + batch_size, nrow)
                self._push_rows(seq[start:end])
        return self

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    def __init_from_np2d(
        self,
        mat: np.ndarray,
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
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        """Initialize data from a 2-D numpy matrix."""
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        if len(mat.shape) != 2:
            raise ValueError('Input numpy.ndarray must be 2 dimensional')

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        self._handle = ctypes.c_void_p()
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        if mat.dtype == np.float32 or mat.dtype == np.float64:
            data = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
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        else:  # change non-float data to float data, need to copy
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            data = np.array(mat.reshape(mat.size), dtype=np.float32)

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        ptr_data, type_ptr_data, _ = _c_float_array(data)
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        _safe_call(_LIB.LGBM_DatasetCreateFromMat(
            ptr_data,
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            ctypes.c_int(type_ptr_data),
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            ctypes.c_int32(mat.shape[0]),
            ctypes.c_int32(mat.shape[1]),
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            ctypes.c_int(_C_API_IS_ROW_MAJOR),
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            _c_str(params_str),
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            ref_dataset,
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            ctypes.byref(self._handle)))
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        return self
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    def __init_from_list_np2d(
        self,
        mats: List[np.ndarray],
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
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        """Initialize data from a list of 2-D numpy matrices."""
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        ncol = mats[0].shape[1]
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        nrow = np.empty((len(mats),), np.int32)
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        ptr_data: _ctypes_float_array
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        if mats[0].dtype == np.float64:
            ptr_data = (ctypes.POINTER(ctypes.c_double) * len(mats))()
        else:
            ptr_data = (ctypes.POINTER(ctypes.c_float) * len(mats))()

        holders = []
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        type_ptr_data = -1
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        for i, mat in enumerate(mats):
            if len(mat.shape) != 2:
                raise ValueError('Input numpy.ndarray must be 2 dimensional')

            if mat.shape[1] != ncol:
                raise ValueError('Input arrays must have same number of columns')

            nrow[i] = mat.shape[0]

            if mat.dtype == np.float32 or mat.dtype == np.float64:
                mats[i] = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
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            else:  # change non-float data to float data, need to copy
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                mats[i] = np.array(mat.reshape(mat.size), dtype=np.float32)

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            chunk_ptr_data, chunk_type_ptr_data, holder = _c_float_array(mats[i])
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            if type_ptr_data != -1 and chunk_type_ptr_data != type_ptr_data:
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                raise ValueError('Input chunks must have same type')
            ptr_data[i] = chunk_ptr_data
            type_ptr_data = chunk_type_ptr_data
            holders.append(holder)

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        self._handle = ctypes.c_void_p()
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        _safe_call(_LIB.LGBM_DatasetCreateFromMats(
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            ctypes.c_int32(len(mats)),
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            ctypes.cast(ptr_data, ctypes.POINTER(ctypes.POINTER(ctypes.c_double))),
            ctypes.c_int(type_ptr_data),
            nrow.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
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            ctypes.c_int32(ncol),
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            ctypes.c_int(_C_API_IS_ROW_MAJOR),
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            _c_str(params_str),
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            ref_dataset,
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            ctypes.byref(self._handle)))
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        return self
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    def __init_from_csr(
        self,
        csr: scipy.sparse.csr_matrix,
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
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        """Initialize data from a CSR matrix."""
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        if len(csr.indices) != len(csr.data):
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            raise ValueError(f'Length mismatch: {len(csr.indices)} vs {len(csr.data)}')
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        self._handle = ctypes.c_void_p()
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        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csr.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csr.data)
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        assert csr.shape[1] <= _MAX_INT32
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        csr_indices = csr.indices.astype(np.int32, copy=False)
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        _safe_call(_LIB.LGBM_DatasetCreateFromCSR(
            ptr_indptr,
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            ctypes.c_int(type_ptr_indptr),
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            csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
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            ptr_data,
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            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csr.indptr)),
            ctypes.c_int64(len(csr.data)),
            ctypes.c_int64(csr.shape[1]),
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            _c_str(params_str),
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            ref_dataset,
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            ctypes.byref(self._handle)))
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        return self
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    def __init_from_csc(
        self,
        csc: scipy.sparse.csc_matrix,
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
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        """Initialize data from a CSC matrix."""
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        if len(csc.indices) != len(csc.data):
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            raise ValueError(f'Length mismatch: {len(csc.indices)} vs {len(csc.data)}')
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        self._handle = ctypes.c_void_p()
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        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csc.data)
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        assert csc.shape[0] <= _MAX_INT32
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        csc_indices = csc.indices.astype(np.int32, copy=False)
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        _safe_call(_LIB.LGBM_DatasetCreateFromCSC(
            ptr_indptr,
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            ctypes.c_int(type_ptr_indptr),
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            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
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            ptr_data,
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            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
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            _c_str(params_str),
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            ref_dataset,
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            ctypes.byref(self._handle)))
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        return self
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    @staticmethod
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    def _compare_params_for_warning(
        params: Optional[Dict[str, Any]],
        other_params: Optional[Dict[str, Any]],
        ignore_keys: Set[str]
    ) -> bool:
        """Compare two dictionaries with params ignoring some keys.
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        It is only for the warning purpose.

        Parameters
        ----------
        params : dict or None
            One dictionary with parameters to compare.
        other_params : dict or None
            Another dictionary with parameters to compare.
        ignore_keys : set
            Keys that should be ignored during comparing two dictionaries.
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        Returns
        -------
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        compare_result : bool
          Returns whether two dictionaries with params are equal.
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        """
        if params is None:
            params = {}
        if other_params is None:
            other_params = {}
        for k in other_params:
            if k not in ignore_keys:
                if k not in params or params[k] != other_params[k]:
                    return False
        for k in params:
            if k not in ignore_keys:
                if k not in other_params or params[k] != other_params[k]:
                    return False
        return True

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    def construct(self) -> "Dataset":
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        """Lazy init.

        Returns
        -------
        self : Dataset
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            Constructed Dataset object.
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        """
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        if self._handle is None:
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            if self.reference is not None:
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                reference_params = self.reference.get_params()
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                params = self.get_params()
                if params != reference_params:
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                    if not self._compare_params_for_warning(
                        params=params,
                        other_params=reference_params,
                        ignore_keys=_ConfigAliases.get("categorical_feature")
                    ):
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                        _log_warning('Overriding the parameters from Reference Dataset.')
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                    self._update_params(reference_params)
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                if self.used_indices is None:
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                    # create valid
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                    self._lazy_init(data=self.data, label=self.label, reference=self.reference,
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                                    weight=self.weight, group=self.group,
                                    init_score=self.init_score, predictor=self._predictor,
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                                    feature_name=self.feature_name, categorical_feature='auto', params=self.params)
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                else:
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                    # construct subset
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                    used_indices = _list_to_1d_numpy(self.used_indices, dtype=np.int32, name='used_indices')
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                    assert used_indices.flags.c_contiguous
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                    if self.reference.group is not None:
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                        group_info = np.array(self.reference.group).astype(np.int32, copy=False)
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                        _, self.group = np.unique(np.repeat(range(len(group_info)), repeats=group_info)[self.used_indices],
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                                                  return_counts=True)
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                    self._handle = ctypes.c_void_p()
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                    params_str = _param_dict_to_str(self.params)
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                    _safe_call(_LIB.LGBM_DatasetGetSubset(
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                        self.reference.construct()._handle,
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                        used_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
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                        ctypes.c_int32(used_indices.shape[0]),
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                        _c_str(params_str),
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                        ctypes.byref(self._handle)))
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                    if not self.free_raw_data:
                        self.get_data()
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                    if self.group is not None:
                        self.set_group(self.group)
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                    if self.get_label() is None:
                        raise ValueError("Label should not be None.")
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                    if isinstance(self._predictor, _InnerPredictor) and self._predictor is not self.reference._predictor:
                        self.get_data()
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                        self._set_init_score_by_predictor(
                            predictor=self._predictor,
                            data=self.data,
                            used_indices=used_indices
                        )
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            else:
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                # create train
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                self._lazy_init(data=self.data, label=self.label, reference=None,
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                                weight=self.weight, group=self.group,
                                init_score=self.init_score, predictor=self._predictor,
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                                feature_name=self.feature_name, categorical_feature=self.categorical_feature, params=self.params)
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            if self.free_raw_data:
                self.data = None
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            self.feature_name = self.get_feature_name()
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        return self
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    def create_valid(
        self,
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        data: _LGBM_TrainDataType,
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        label: Optional[_LGBM_LabelType] = None,
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        weight: Optional[_LGBM_WeightType] = None,
        group: Optional[_LGBM_GroupType] = None,
        init_score: Optional[_LGBM_InitScoreType] = None,
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        params: Optional[Dict[str, Any]] = None
    ) -> "Dataset":
2274
        """Create validation data align with current Dataset.
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        Parameters
        ----------
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        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array
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            Data source of Dataset.
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            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM) or a LightGBM Dataset binary file.
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        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None, optional (default=None)
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            Label of the data.
        weight : list, numpy 1-D array, pandas Series or None, optional (default=None)
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            Weight for each instance. Weights should be non-negative.
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        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
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            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
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            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
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        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None, optional (default=None)
2292
            Init score for Dataset.
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        params : dict or None, optional (default=None)
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            Other parameters for validation Dataset.
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        Returns
        -------
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        valid : Dataset
            Validation Dataset with reference to self.
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        """
2301
        ret = Dataset(data, label=label, reference=self,
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                      weight=weight, group=group, init_score=init_score,
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                      params=params, free_raw_data=self.free_raw_data)
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        ret._predictor = self._predictor
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        ret.pandas_categorical = self.pandas_categorical
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        return ret
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    def subset(
        self,
        used_indices: List[int],
        params: Optional[Dict[str, Any]] = None
    ) -> "Dataset":
2313
        """Get subset of current Dataset.
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        Parameters
        ----------
        used_indices : list of int
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            Indices used to create the subset.
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        params : dict or None, optional (default=None)
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            These parameters will be passed to Dataset constructor.
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        Returns
        -------
        subset : Dataset
            Subset of the current Dataset.
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        """
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        if params is None:
            params = self.params
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        ret = Dataset(None, reference=self, feature_name=self.feature_name,
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                      categorical_feature=self.categorical_feature, params=params,
                      free_raw_data=self.free_raw_data)
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        ret._predictor = self._predictor
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        ret.pandas_categorical = self.pandas_categorical
2334
        ret.used_indices = sorted(used_indices)
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        return ret

2337
    def save_binary(self, filename: Union[str, Path]) -> "Dataset":
2338
        """Save Dataset to a binary file.
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        .. note::

            Please note that `init_score` is not saved in binary file.
            If you need it, please set it again after loading Dataset.

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        Parameters
        ----------
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        filename : str or pathlib.Path
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            Name of the output file.
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        Returns
        -------
        self : Dataset
            Returns self.
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        """
        _safe_call(_LIB.LGBM_DatasetSaveBinary(
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            self.construct()._handle,
2357
            _c_str(str(filename))))
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        return self
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2360
    def _update_params(self, params: Optional[Dict[str, Any]]) -> "Dataset":
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        if not params:
            return self
2363
        params = deepcopy(params)
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        def update():
            if not self.params:
                self.params = params
            else:
2369
                self._params_back_up = deepcopy(self.params)
2370
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                self.params.update(params)

2372
        if self._handle is None:
2373
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2375
            update()
        elif params is not None:
            ret = _LIB.LGBM_DatasetUpdateParamChecking(
2376
2377
                _c_str(_param_dict_to_str(self.params)),
                _c_str(_param_dict_to_str(params)))
2378
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            if ret != 0:
                # could be updated if data is not freed
                if self.data is not None:
                    update()
                    self._free_handle()
                else:
2384
                    raise LightGBMError(_LIB.LGBM_GetLastError().decode('utf-8'))
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        return self
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2386

2387
    def _reverse_update_params(self) -> "Dataset":
2388
        if self._handle is None:
2389
2390
            self.params = deepcopy(self._params_back_up)
            self._params_back_up = None
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2391
        return self
2392

2393
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    def set_field(
        self,
        field_name: str,
2396
        data: Optional[Union[List[List[float]], List[List[int]], List[float], List[int], np.ndarray, pd_Series, pd_DataFrame]]
2397
    ) -> "Dataset":
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2398
        """Set property into the Dataset.
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        Parameters
        ----------
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        field_name : str
2403
            The field name of the information.
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        data : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None
            The data to be set.
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        Returns
        -------
        self : Dataset
            Dataset with set property.
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        """
2412
        if self._handle is None:
2413
            raise Exception(f"Cannot set {field_name} before construct dataset")
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        if data is None:
2415
            # set to None
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2416
            _safe_call(_LIB.LGBM_DatasetSetField(
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                self._handle,
2418
                _c_str(field_name),
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                None,
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2420
                ctypes.c_int(0),
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                ctypes.c_int(_FIELD_TYPE_MAPPER[field_name])))
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            return self
2423
        dtype: "np.typing.DTypeLike"
2424
        if field_name == 'init_score':
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2425
            dtype = np.float64
2426
            if _is_1d_collection(data):
2427
                data = _list_to_1d_numpy(data, dtype=dtype, name=field_name)
2428
            elif _is_2d_collection(data):
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                data = _data_to_2d_numpy(data, dtype=dtype, name=field_name)
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                data = data.ravel(order='F')
            else:
                raise TypeError(
                    'init_score must be list, numpy 1-D array or pandas Series.\n'
                    'In multiclass classification init_score can also be a list of lists, numpy 2-D array or pandas DataFrame.'
                )
        else:
            dtype = np.int32 if field_name == 'group' else np.float32
2438
            data = _list_to_1d_numpy(data, dtype=dtype, name=field_name)
2439

2440
        ptr_data: Union[_ctypes_float_ptr, _ctypes_int_ptr]
2441
        if data.dtype == np.float32 or data.dtype == np.float64:
2442
            ptr_data, type_data, _ = _c_float_array(data)
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2443
        elif data.dtype == np.int32:
2444
            ptr_data, type_data, _ = _c_int_array(data)
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2445
        else:
2446
            raise TypeError(f"Expected np.float32/64 or np.int32, met type({data.dtype})")
2447
        if type_data != _FIELD_TYPE_MAPPER[field_name]:
2448
            raise TypeError("Input type error for set_field")
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2449
        _safe_call(_LIB.LGBM_DatasetSetField(
2450
            self._handle,
2451
            _c_str(field_name),
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2452
            ptr_data,
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2453
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            ctypes.c_int(len(data)),
            ctypes.c_int(type_data)))
2455
        self.version += 1
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2456
        return self
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2457

2458
    def get_field(self, field_name: str) -> Optional[np.ndarray]:
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2459
        """Get property from the Dataset.
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        Parameters
        ----------
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        field_name : str
2464
            The field name of the information.
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        Returns
        -------
2468
        info : numpy array or None
2469
            A numpy array with information from the Dataset.
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2470
        """
2471
        if self._handle is None:
2472
            raise Exception(f"Cannot get {field_name} before construct Dataset")
2473
2474
        tmp_out_len = ctypes.c_int(0)
        out_type = ctypes.c_int(0)
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2475
2476
        ret = ctypes.POINTER(ctypes.c_void_p)()
        _safe_call(_LIB.LGBM_DatasetGetField(
2477
            self._handle,
2478
            _c_str(field_name),
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2479
2480
2481
            ctypes.byref(tmp_out_len),
            ctypes.byref(ret),
            ctypes.byref(out_type)))
2482
        if out_type.value != _FIELD_TYPE_MAPPER[field_name]:
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2483
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2485
            raise TypeError("Return type error for get_field")
        if tmp_out_len.value == 0:
            return None
2486
        if out_type.value == _C_API_DTYPE_INT32:
2487
            arr = _cint32_array_to_numpy(ctypes.cast(ret, ctypes.POINTER(ctypes.c_int32)), tmp_out_len.value)
2488
        elif out_type.value == _C_API_DTYPE_FLOAT32:
2489
            arr = _cfloat32_array_to_numpy(ctypes.cast(ret, ctypes.POINTER(ctypes.c_float)), tmp_out_len.value)
2490
        elif out_type.value == _C_API_DTYPE_FLOAT64:
2491
            arr = _cfloat64_array_to_numpy(ctypes.cast(ret, ctypes.POINTER(ctypes.c_double)), tmp_out_len.value)
2492
        else:
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2493
            raise TypeError("Unknown type")
2494
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2499
        if field_name == 'init_score':
            num_data = self.num_data()
            num_classes = arr.size // num_data
            if num_classes > 1:
                arr = arr.reshape((num_data, num_classes), order='F')
        return arr
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2500

2501
2502
    def set_categorical_feature(
        self,
2503
        categorical_feature: _LGBM_CategoricalFeatureConfiguration
2504
    ) -> "Dataset":
2505
        """Set categorical features.
2506
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2508

        Parameters
        ----------
2509
        categorical_feature : list of str or int, or 'auto'
2510
            Names or indices of categorical features.
Nikita Titov's avatar
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2511
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        Returns
        -------
        self : Dataset
            Dataset with set categorical features.
2516
2517
        """
        if self.categorical_feature == categorical_feature:
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2518
            return self
2519
        if self.data is not None:
2520
2521
            if self.categorical_feature is None:
                self.categorical_feature = categorical_feature
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2522
                return self._free_handle()
2523
            elif categorical_feature == 'auto':
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2524
                return self
2525
            else:
2526
2527
                if self.categorical_feature != 'auto':
                    _log_warning('categorical_feature in Dataset is overridden.\n'
2528
                                 f'New categorical_feature is {list(categorical_feature)}')
2529
                self.categorical_feature = categorical_feature
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2530
                return self._free_handle()
2531
        else:
2532
2533
            raise LightGBMError("Cannot set categorical feature after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
2534

2535
2536
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2538
    def _set_predictor(
        self,
        predictor: Optional[_InnerPredictor]
    ) -> "Dataset":
2539
2540
2541
2542
        """Set predictor for continued training.

        It is not recommended for user to call this function.
        Please use init_model argument in engine.train() or engine.cv() instead.
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2543
        """
2544
        if predictor is None and self._predictor is None:
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2545
            return self
2546
2547
2548
        elif isinstance(predictor, _InnerPredictor) and isinstance(self._predictor, _InnerPredictor):
            if (predictor == self._predictor) and (predictor.current_iteration() == self._predictor.current_iteration()):
                return self
2549
        if self._handle is None:
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2550
            self._predictor = predictor
2551
2552
        elif self.data is not None:
            self._predictor = predictor
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2557
            self._set_init_score_by_predictor(
                predictor=self._predictor,
                data=self.data,
                used_indices=None
            )
2558
2559
        elif self.used_indices is not None and self.reference is not None and self.reference.data is not None:
            self._predictor = predictor
2560
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2563
2564
            self._set_init_score_by_predictor(
                predictor=self._predictor,
                data=self.reference.data,
                used_indices=self.used_indices
            )
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2565
        else:
2566
2567
            raise LightGBMError("Cannot set predictor after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
2568
        return self
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2569

2570
    def set_reference(self, reference: "Dataset") -> "Dataset":
2571
        """Set reference Dataset.
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        Parameters
        ----------
        reference : Dataset
2576
            Reference that is used as a template to construct the current Dataset.
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2581

        Returns
        -------
        self : Dataset
            Dataset with set reference.
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2582
        """
2583
2584
2585
        self.set_categorical_feature(reference.categorical_feature) \
            .set_feature_name(reference.feature_name) \
            ._set_predictor(reference._predictor)
2586
        # we're done if self and reference share a common upstream reference
2587
        if self.get_ref_chain().intersection(reference.get_ref_chain()):
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2588
            return self
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2589
2590
        if self.data is not None:
            self.reference = reference
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2591
            return self._free_handle()
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2592
        else:
2593
2594
            raise LightGBMError("Cannot set reference after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
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Guolin Ke committed
2595

2596
    def set_feature_name(self, feature_name: _LGBM_FeatureNameConfiguration) -> "Dataset":
2597
        """Set feature name.
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2598
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2600

        Parameters
        ----------
2601
        feature_name : list of str
2602
            Feature names.
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2607

        Returns
        -------
        self : Dataset
            Dataset with set feature name.
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2608
        """
2609
2610
        if feature_name != 'auto':
            self.feature_name = feature_name
2611
        if self._handle is not None and feature_name is not None and feature_name != 'auto':
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2612
            if len(feature_name) != self.num_feature():
2613
                raise ValueError(f"Length of feature_name({len(feature_name)}) and num_feature({self.num_feature()}) don't match")
2614
            c_feature_name = [_c_str(name) for name in feature_name]
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2615
            _safe_call(_LIB.LGBM_DatasetSetFeatureNames(
2616
                self._handle,
2617
                _c_array(ctypes.c_char_p, c_feature_name),
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2618
                ctypes.c_int(len(feature_name))))
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2619
        return self
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2620

2621
    def set_label(self, label: Optional[_LGBM_LabelType]) -> "Dataset":
2622
        """Set label of Dataset.
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2623
2624
2625

        Parameters
        ----------
2626
        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None
2627
            The label information to be set into Dataset.
Nikita Titov's avatar
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2632

        Returns
        -------
        self : Dataset
            Dataset with set label.
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2633
2634
        """
        self.label = label
2635
        if self._handle is not None:
2636
2637
2638
2639
            if isinstance(label, pd_DataFrame):
                if len(label.columns) > 1:
                    raise ValueError('DataFrame for label cannot have multiple columns')
                _check_for_bad_pandas_dtypes(label.dtypes)
2640
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2650
                try:
                    # most common case (no nullable dtypes)
                    label = label.to_numpy(dtype=np.float32, copy=False)
                except TypeError:
                    # 1.0 <= pd version < 1.1 and nullable dtypes, least common case
                    # raises error because array is casted to type(pd.NA) and there's no na_value argument
                    label = label.astype(np.float32, copy=False).values
                except ValueError:
                    # data has nullable dtypes, but we can specify na_value argument and copy will be made
                    label = label.to_numpy(dtype=np.float32, na_value=np.nan)
                label_array = np.ravel(label)
2651
            else:
2652
                label_array = _list_to_1d_numpy(label, dtype=np.float32, name='label')
2653
            self.set_field('label', label_array)
2654
            self.label = self.get_field('label')  # original values can be modified at cpp side
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2655
        return self
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2656

2657
2658
2659
2660
    def set_weight(
        self,
        weight: Optional[_LGBM_WeightType]
    ) -> "Dataset":
2661
        """Set weight of each instance.
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2662
2663
2664

        Parameters
        ----------
2665
        weight : list, numpy 1-D array, pandas Series or None
2666
            Weight to be set for each data point. Weights should be non-negative.
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2671

        Returns
        -------
        self : Dataset
            Dataset with set weight.
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2672
        """
2673
2674
        if weight is not None and np.all(weight == 1):
            weight = None
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2675
        self.weight = weight
2676
        if self._handle is not None and weight is not None:
2677
            weight = _list_to_1d_numpy(weight, dtype=np.float32, name='weight')
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2678
            self.set_field('weight', weight)
2679
            self.weight = self.get_field('weight')  # original values can be modified at cpp side
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2680
        return self
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2681

2682
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2685
    def set_init_score(
        self,
        init_score: Optional[_LGBM_InitScoreType]
    ) -> "Dataset":
2686
        """Set init score of Booster to start from.
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2687
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2689

        Parameters
        ----------
2690
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None
2691
            Init score for Booster.
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2696

        Returns
        -------
        self : Dataset
            Dataset with set init score.
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2697
2698
        """
        self.init_score = init_score
2699
        if self._handle is not None and init_score is not None:
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2700
            self.set_field('init_score', init_score)
2701
            self.init_score = self.get_field('init_score')  # original values can be modified at cpp side
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Nikita Titov committed
2702
        return self
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2703

2704
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2706
2707
    def set_group(
        self,
        group: Optional[_LGBM_GroupType]
    ) -> "Dataset":
2708
        """Set group size of Dataset (used for ranking).
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2709
2710
2711

        Parameters
        ----------
2712
        group : list, numpy 1-D array, pandas Series or None
2713
2714
2715
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
2716
2717
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
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2722

        Returns
        -------
        self : Dataset
            Dataset with set group.
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Guolin Ke committed
2723
2724
        """
        self.group = group
2725
        if self._handle is not None and group is not None:
2726
            group = _list_to_1d_numpy(group, dtype=np.int32, name='group')
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2727
            self.set_field('group', group)
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2728
        return self
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2729

2730
    def get_feature_name(self) -> List[str]:
2731
2732
2733
2734
        """Get the names of columns (features) in the Dataset.

        Returns
        -------
2735
        feature_names : list of str
2736
2737
            The names of columns (features) in the Dataset.
        """
2738
        if self._handle is None:
2739
2740
2741
2742
2743
            raise LightGBMError("Cannot get feature_name before construct dataset")
        num_feature = self.num_feature()
        tmp_out_len = ctypes.c_int(0)
        reserved_string_buffer_size = 255
        required_string_buffer_size = ctypes.c_size_t(0)
2744
        string_buffers = [ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(num_feature)]
2745
2746
        ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
        _safe_call(_LIB.LGBM_DatasetGetFeatureNames(
2747
            self._handle,
2748
            ctypes.c_int(num_feature),
2749
            ctypes.byref(tmp_out_len),
2750
            ctypes.c_size_t(reserved_string_buffer_size),
2751
2752
2753
2754
            ctypes.byref(required_string_buffer_size),
            ptr_string_buffers))
        if num_feature != tmp_out_len.value:
            raise ValueError("Length of feature names doesn't equal with num_feature")
2755
2756
2757
2758
2759
2760
        actual_string_buffer_size = required_string_buffer_size.value
        # if buffer length is not long enough, reallocate buffers
        if reserved_string_buffer_size < actual_string_buffer_size:
            string_buffers = [ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(num_feature)]
            ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
            _safe_call(_LIB.LGBM_DatasetGetFeatureNames(
2761
                self._handle,
2762
2763
2764
2765
2766
                ctypes.c_int(num_feature),
                ctypes.byref(tmp_out_len),
                ctypes.c_size_t(actual_string_buffer_size),
                ctypes.byref(required_string_buffer_size),
                ptr_string_buffers))
2767
        return [string_buffers[i].value.decode('utf-8') for i in range(num_feature)]
2768

2769
    def get_label(self) -> Optional[np.ndarray]:
2770
        """Get the label of the Dataset.
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2771
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2773

        Returns
        -------
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2774
        label : numpy array or None
2775
            The label information from the Dataset.
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2776
        """
2777
        if self.label is None:
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2778
            self.label = self.get_field('label')
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2779
2780
        return self.label

2781
    def get_weight(self) -> Optional[np.ndarray]:
2782
        """Get the weight of the Dataset.
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2783
2784
2785

        Returns
        -------
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2786
        weight : numpy array or None
2787
            Weight for each data point from the Dataset. Weights should be non-negative.
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2788
        """
2789
        if self.weight is None:
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2790
            self.weight = self.get_field('weight')
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2792
        return self.weight

2793
    def get_init_score(self) -> Optional[np.ndarray]:
2794
        """Get the initial score of the Dataset.
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2795
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2797

        Returns
        -------
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2798
        init_score : numpy array or None
2799
            Init score of Booster.
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        """
2801
        if self.init_score is None:
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2802
            self.init_score = self.get_field('init_score')
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        return self.init_score

2805
    def get_data(self) -> Optional[_LGBM_TrainDataType]:
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        """Get the raw data of the Dataset.

        Returns
        -------
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        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array or None
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            Raw data used in the Dataset construction.
        """
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        if self._handle is None:
2814
            raise Exception("Cannot get data before construct Dataset")
2815
        if self._need_slice and self.used_indices is not None and self.reference is not None:
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            self.data = self.reference.data
            if self.data is not None:
2818
                if isinstance(self.data, np.ndarray) or isinstance(self.data, scipy.sparse.spmatrix):
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                    self.data = self.data[self.used_indices, :]
2820
                elif isinstance(self.data, pd_DataFrame):
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                    self.data = self.data.iloc[self.used_indices].copy()
2822
                elif isinstance(self.data, dt_DataTable):
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2823
                    self.data = self.data[self.used_indices, :]
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                elif isinstance(self.data, Sequence):
                    self.data = self.data[self.used_indices]
                elif isinstance(self.data, list) and len(self.data) > 0 and all(isinstance(x, Sequence) for x in self.data):
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                    self.data = np.array(list(self._yield_row_from_seqlist(self.data, self.used_indices)))
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2828
                else:
2829
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                    _log_warning(f"Cannot subset {type(self.data).__name__} type of raw data.\n"
                                 "Returning original raw data")
2831
            self._need_slice = False
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        if self.data is None:
            raise LightGBMError("Cannot call `get_data` after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
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        return self.data

2837
    def get_group(self) -> Optional[np.ndarray]:
2838
        """Get the group of the Dataset.
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        Returns
        -------
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        group : numpy array or None
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            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
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            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
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        """
2849
        if self.group is None:
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            self.group = self.get_field('group')
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            if self.group is not None:
                # group data from LightGBM is boundaries data, need to convert to group size
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                self.group = np.diff(self.group)
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        return self.group

2856
    def num_data(self) -> int:
2857
        """Get the number of rows in the Dataset.
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        Returns
        -------
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        number_of_rows : int
            The number of rows in the Dataset.
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        """
2864
        if self._handle is not None:
2865
            ret = ctypes.c_int(0)
2866
            _safe_call(_LIB.LGBM_DatasetGetNumData(self._handle,
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                                                   ctypes.byref(ret)))
            return ret.value
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        else:
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            raise LightGBMError("Cannot get num_data before construct dataset")
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2872
    def num_feature(self) -> int:
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        """Get the number of columns (features) in the Dataset.
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        Returns
        -------
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        number_of_columns : int
            The number of columns (features) in the Dataset.
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        """
2880
        if self._handle is not None:
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            ret = ctypes.c_int(0)
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            _safe_call(_LIB.LGBM_DatasetGetNumFeature(self._handle,
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                                                      ctypes.byref(ret)))
            return ret.value
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        else:
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            raise LightGBMError("Cannot get num_feature before construct dataset")
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2887

2888
    def feature_num_bin(self, feature: Union[int, str]) -> int:
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        """Get the number of bins for a feature.

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        .. versionadded:: 4.0.0

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        Parameters
        ----------
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        feature : int or str
            Index or name of the feature.
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        Returns
        -------
        number_of_bins : int
            The number of constructed bins for the feature in the Dataset.
        """
2903
        if self._handle is not None:
2904
            if isinstance(feature, str):
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                feature_index = self.feature_name.index(feature)
            else:
                feature_index = feature
2908
            ret = ctypes.c_int(0)
2909
            _safe_call(_LIB.LGBM_DatasetGetFeatureNumBin(self._handle,
2910
                                                         ctypes.c_int(feature_index),
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                                                         ctypes.byref(ret)))
            return ret.value
        else:
            raise LightGBMError("Cannot get feature_num_bin before construct dataset")

2916
    def get_ref_chain(self, ref_limit: int = 100) -> Set["Dataset"]:
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        """Get a chain of Dataset objects.

        Starts with r, then goes to r.reference (if exists),
        then to r.reference.reference, etc.
        until we hit ``ref_limit`` or a reference loop.
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        Parameters
        ----------
        ref_limit : int, optional (default=100)
            The limit number of references.
2927
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2929

        Returns
        -------
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        ref_chain : set of Dataset
            Chain of references of the Datasets.
        """
2933
        head = self
2934
        ref_chain: Set[Dataset] = set()
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2936
        while len(ref_chain) < ref_limit:
            if isinstance(head, Dataset):
2937
                ref_chain.add(head)
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                if (head.reference is not None) and (head.reference not in ref_chain):
                    head = head.reference
                else:
                    break
            else:
                break
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2944
        return ref_chain
2945

2946
    def add_features_from(self, other: "Dataset") -> "Dataset":
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        """Add features from other Dataset to the current Dataset.

        Both Datasets must be constructed before calling this method.

        Parameters
        ----------
        other : Dataset
            The Dataset to take features from.

        Returns
        -------
        self : Dataset
            Dataset with the new features added.
        """
2961
        if self._handle is None or other._handle is None:
2962
            raise ValueError('Both source and target Datasets must be constructed before adding features')
2963
        _safe_call(_LIB.LGBM_DatasetAddFeaturesFrom(self._handle, other._handle))
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        was_none = self.data is None
        old_self_data_type = type(self.data).__name__
        if other.data is None:
            self.data = None
        elif self.data is not None:
            if isinstance(self.data, np.ndarray):
                if isinstance(other.data, np.ndarray):
                    self.data = np.hstack((self.data, other.data))
2972
                elif isinstance(other.data, scipy.sparse.spmatrix):
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2973
                    self.data = np.hstack((self.data, other.data.toarray()))
2974
                elif isinstance(other.data, pd_DataFrame):
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2975
                    self.data = np.hstack((self.data, other.data.values))
2976
                elif isinstance(other.data, dt_DataTable):
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                    self.data = np.hstack((self.data, other.data.to_numpy()))
                else:
                    self.data = None
2980
            elif isinstance(self.data, scipy.sparse.spmatrix):
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2981
                sparse_format = self.data.getformat()
2982
                if isinstance(other.data, np.ndarray) or isinstance(other.data, scipy.sparse.spmatrix):
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2983
                    self.data = scipy.sparse.hstack((self.data, other.data), format=sparse_format)
2984
                elif isinstance(other.data, pd_DataFrame):
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2985
                    self.data = scipy.sparse.hstack((self.data, other.data.values), format=sparse_format)
2986
                elif isinstance(other.data, dt_DataTable):
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                    self.data = scipy.sparse.hstack((self.data, other.data.to_numpy()), format=sparse_format)
                else:
                    self.data = None
2990
            elif isinstance(self.data, pd_DataFrame):
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                if not PANDAS_INSTALLED:
                    raise LightGBMError("Cannot add features to DataFrame type of raw data "
2993
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                                        "without pandas installed. "
                                        "Install pandas and restart your session.")
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                if isinstance(other.data, np.ndarray):
2996
                    self.data = concat((self.data, pd_DataFrame(other.data)),
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2997
                                       axis=1, ignore_index=True)
2998
                elif isinstance(other.data, scipy.sparse.spmatrix):
2999
                    self.data = concat((self.data, pd_DataFrame(other.data.toarray())),
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                                       axis=1, ignore_index=True)
3001
                elif isinstance(other.data, pd_DataFrame):
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                    self.data = concat((self.data, other.data),
                                       axis=1, ignore_index=True)
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                elif isinstance(other.data, dt_DataTable):
                    self.data = concat((self.data, pd_DataFrame(other.data.to_numpy())),
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                                       axis=1, ignore_index=True)
                else:
                    self.data = None
3009
            elif isinstance(self.data, dt_DataTable):
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3010
                if isinstance(other.data, np.ndarray):
3011
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data)))
3012
                elif isinstance(other.data, scipy.sparse.spmatrix):
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                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.toarray())))
                elif isinstance(other.data, pd_DataFrame):
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.values)))
                elif isinstance(other.data, dt_DataTable):
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.to_numpy())))
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                else:
                    self.data = None
            else:
                self.data = None
        if self.data is None:
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            err_msg = (f"Cannot add features from {type(other.data).__name__} type of raw data to "
                       f"{old_self_data_type} type of raw data.\n")
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            err_msg += ("Set free_raw_data=False when construct Dataset to avoid this"
                        if was_none else "Freeing raw data")
3027
            _log_warning(err_msg)
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3028
        self.feature_name = self.get_feature_name()
3029
3030
        _log_warning("Reseting categorical features.\n"
                     "You can set new categorical features via ``set_categorical_feature`` method")
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        self.categorical_feature = "auto"
        self.pandas_categorical = None
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        return self

3035
    def _dump_text(self, filename: Union[str, Path]) -> "Dataset":
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        """Save Dataset to a text file.

        This format cannot be loaded back in by LightGBM, but is useful for debugging purposes.

        Parameters
        ----------
3042
        filename : str or pathlib.Path
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            Name of the output file.

        Returns
        -------
        self : Dataset
            Returns self.
        """
        _safe_call(_LIB.LGBM_DatasetDumpText(
3051
            self.construct()._handle,
3052
            _c_str(str(filename))))
3053
3054
        return self

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3055

3056
3057
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3059
_LGBM_CustomObjectiveFunction = Callable[
    [np.ndarray, Dataset],
    Tuple[np.ndarray, np.ndarray]
]
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_LGBM_CustomEvalFunction = Union[
    Callable[
        [np.ndarray, Dataset],
        _LGBM_EvalFunctionResultType
    ],
    Callable[
        [np.ndarray, Dataset],
        List[_LGBM_EvalFunctionResultType]
    ]
]
3070
3071


3072
class Booster:
3073
    """Booster in LightGBM."""
3074

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    def __init__(
        self,
        params: Optional[Dict[str, Any]] = None,
        train_set: Optional[Dataset] = None,
        model_file: Optional[Union[str, Path]] = None,
        model_str: Optional[str] = None
    ):
3082
        """Initialize the Booster.
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        Parameters
        ----------
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3086
        params : dict or None, optional (default=None)
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            Parameters for Booster.
        train_set : Dataset or None, optional (default=None)
            Training dataset.
3090
        model_file : str, pathlib.Path or None, optional (default=None)
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3091
            Path to the model file.
3092
        model_str : str or None, optional (default=None)
3093
            Model will be loaded from this string.
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3094
        """
3095
        self._handle = ctypes.c_void_p()
3096
        self._network = False
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wxchan committed
3097
        self.__need_reload_eval_info = True
3098
        self._train_data_name = "training"
3099
        self.__set_objective_to_none = False
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wxchan committed
3100
        self.best_iteration = -1
3101
        self.best_score: _LGBM_BoosterBestScoreType = {}
3102
        params = {} if params is None else deepcopy(params)
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3103
        if train_set is not None:
3104
            # Training task
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3105
            if not isinstance(train_set, Dataset):
3106
                raise TypeError(f'Training data should be Dataset instance, met {type(train_set).__name__}')
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            params = _choose_param_value(
                main_param_name="machines",
                params=params,
                default_value=None
            )
            # if "machines" is given, assume user wants to do distributed learning, and set up network
            if params["machines"] is None:
                params.pop("machines", None)
            else:
                machines = params["machines"]
                if isinstance(machines, str):
                    num_machines_from_machine_list = len(machines.split(','))
                elif isinstance(machines, (list, set)):
                    num_machines_from_machine_list = len(machines)
                    machines = ','.join(machines)
                else:
                    raise ValueError("Invalid machines in params.")

                params = _choose_param_value(
                    main_param_name="num_machines",
                    params=params,
                    default_value=num_machines_from_machine_list
                )
                params = _choose_param_value(
                    main_param_name="local_listen_port",
                    params=params,
                    default_value=12400
                )
                self.set_network(
                    machines=machines,
                    local_listen_port=params["local_listen_port"],
                    listen_time_out=params.get("time_out", 120),
                    num_machines=params["num_machines"]
                )
3141
            # construct booster object
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3144
            train_set.construct()
            # copy the parameters from train_set
            params.update(train_set.get_params())
3145
            params_str = _param_dict_to_str(params)
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3146
            _safe_call(_LIB.LGBM_BoosterCreate(
3147
                train_set._handle,
3148
                _c_str(params_str),
3149
                ctypes.byref(self._handle)))
3150
            # save reference to data
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3151
            self.train_set = train_set
3152
3153
            self.valid_sets: List[Dataset] = []
            self.name_valid_sets: List[str] = []
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3154
            self.__num_dataset = 1
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3156
            self.__init_predictor = train_set._predictor
            if self.__init_predictor is not None:
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3157
                _safe_call(_LIB.LGBM_BoosterMerge(
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3159
                    self._handle,
                    self.__init_predictor._handle))
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3160
            out_num_class = ctypes.c_int(0)
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3161
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
3162
                self._handle,
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                ctypes.byref(out_num_class)))
            self.__num_class = out_num_class.value
3165
            # buffer for inner predict
3166
            self.__inner_predict_buffer: List[Optional[np.ndarray]] = [None]
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3168
            self.__is_predicted_cur_iter = [False]
            self.__get_eval_info()
3169
            self.pandas_categorical = train_set.pandas_categorical
3170
            self.train_set_version = train_set.version
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3171
        elif model_file is not None:
3172
            # Prediction task
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3173
            out_num_iterations = ctypes.c_int(0)
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3174
            _safe_call(_LIB.LGBM_BoosterCreateFromModelfile(
3175
                _c_str(str(model_file)),
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3176
                ctypes.byref(out_num_iterations),
3177
                ctypes.byref(self._handle)))
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Guolin Ke committed
3178
            out_num_class = ctypes.c_int(0)
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3179
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
3180
                self._handle,
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                ctypes.byref(out_num_class)))
            self.__num_class = out_num_class.value
3183
            self.pandas_categorical = _load_pandas_categorical(file_name=model_file)
3184
3185
3186
            if params:
                _log_warning('Ignoring params argument, using parameters from model file.')
            params = self._get_loaded_param()
3187
        elif model_str is not None:
3188
            self.model_from_string(model_str)
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3189
        else:
3190
3191
            raise TypeError('Need at least one training dataset or model file or model string '
                            'to create Booster instance')
3192
        self.params = params
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3193

3194
    def __del__(self) -> None:
3195
        try:
3196
            if self._network:
3197
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3199
3200
                self.free_network()
        except AttributeError:
            pass
        try:
3201
3202
            if self._handle is not None:
                _safe_call(_LIB.LGBM_BoosterFree(self._handle))
3203
3204
        except AttributeError:
            pass
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3205

3206
    def __copy__(self) -> "Booster":
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        return self.__deepcopy__(None)

3209
    def __deepcopy__(self, _) -> "Booster":
3210
        model_str = self.model_to_string(num_iteration=-1)
3211
        return Booster(model_str=model_str)
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wxchan committed
3212

3213
    def __getstate__(self) -> Dict[str, Any]:
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3214
        this = self.__dict__.copy()
3215
        handle = this['_handle']
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        this.pop('train_set', None)
        this.pop('valid_sets', None)
        if handle is not None:
3219
            this["_handle"] = self.model_to_string(num_iteration=-1)
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        return this

3222
    def __setstate__(self, state: Dict[str, Any]) -> None:
3223
        model_str = state.get('_handle', state.get('handle', None))
3224
        if model_str is not None:
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3225
            handle = ctypes.c_void_p()
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3226
            out_num_iterations = ctypes.c_int(0)
3227
            _safe_call(_LIB.LGBM_BoosterLoadModelFromString(
3228
                _c_str(model_str),
3229
3230
                ctypes.byref(out_num_iterations),
                ctypes.byref(handle)))
3231
            state['_handle'] = handle
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        self.__dict__.update(state)

3234
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    def _get_loaded_param(self) -> Dict[str, Any]:
        buffer_len = 1 << 20
        tmp_out_len = ctypes.c_int64(0)
        string_buffer = ctypes.create_string_buffer(buffer_len)
        ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
        _safe_call(_LIB.LGBM_BoosterGetLoadedParam(
3240
            self._handle,
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            ctypes.c_int64(buffer_len),
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
        # if buffer length is not long enough, re-allocate a buffer
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
            ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
            _safe_call(_LIB.LGBM_BoosterGetLoadedParam(
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                self._handle,
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                ctypes.c_int64(actual_len),
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
        return json.loads(string_buffer.value.decode('utf-8'))

3256
    def free_dataset(self) -> "Booster":
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        """Free Booster's Datasets.

        Returns
        -------
        self : Booster
            Booster without Datasets.
        """
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        self.__dict__.pop('train_set', None)
        self.__dict__.pop('valid_sets', None)
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        self.__num_dataset = 0
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        return self
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    def _free_buffer(self) -> "Booster":
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        self.__inner_predict_buffer = []
        self.__is_predicted_cur_iter = []
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        return self
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    def set_network(
        self,
        machines: Union[List[str], Set[str], str],
        local_listen_port: int = 12400,
        listen_time_out: int = 120,
        num_machines: int = 1
    ) -> "Booster":
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        """Set the network configuration.

        Parameters
        ----------
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        machines : list, set or str
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            Names of machines.
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        local_listen_port : int, optional (default=12400)
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            TCP listen port for local machines.
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        listen_time_out : int, optional (default=120)
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            Socket time-out in minutes.
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        num_machines : int, optional (default=1)
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            The number of machines for distributed learning application.
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        Returns
        -------
        self : Booster
            Booster with set network.
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        """
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        if isinstance(machines, (list, set)):
            machines = ','.join(machines)
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        _safe_call(_LIB.LGBM_NetworkInit(_c_str(machines),
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                                         ctypes.c_int(local_listen_port),
                                         ctypes.c_int(listen_time_out),
                                         ctypes.c_int(num_machines)))
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        self._network = True
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        return self
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    def free_network(self) -> "Booster":
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        """Free Booster's network.

        Returns
        -------
        self : Booster
            Booster with freed network.
        """
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        _safe_call(_LIB.LGBM_NetworkFree())
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        self._network = False
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        return self
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    def trees_to_dataframe(self) -> pd_DataFrame:
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        """Parse the fitted model and return in an easy-to-read pandas DataFrame.

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        The returned DataFrame has the following columns.

            - ``tree_index`` : int64, which tree a node belongs to. 0-based, so a value of ``6``, for example, means "this node is in the 7th tree".
            - ``node_depth`` : int64, how far a node is from the root of the tree. The root node has a value of ``1``, its direct children are ``2``, etc.
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            - ``node_index`` : str, unique identifier for a node.
            - ``left_child`` : str, ``node_index`` of the child node to the left of a split. ``None`` for leaf nodes.
            - ``right_child`` : str, ``node_index`` of the child node to the right of a split. ``None`` for leaf nodes.
            - ``parent_index`` : str, ``node_index`` of this node's parent. ``None`` for the root node.
            - ``split_feature`` : str, name of the feature used for splitting. ``None`` for leaf nodes.
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            - ``split_gain`` : float64, gain from adding this split to the tree. ``NaN`` for leaf nodes.
            - ``threshold`` : float64, value of the feature used to decide which side of the split a record will go down. ``NaN`` for leaf nodes.
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            - ``decision_type`` : str, logical operator describing how to compare a value to ``threshold``.
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              For example, ``split_feature = "Column_10", threshold = 15, decision_type = "<="`` means that
              records where ``Column_10 <= 15`` follow the left side of the split, otherwise follows the right side of the split. ``None`` for leaf nodes.
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            - ``missing_direction`` : str, split direction that missing values should go to. ``None`` for leaf nodes.
            - ``missing_type`` : str, describes what types of values are treated as missing.
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            - ``value`` : float64, predicted value for this leaf node, multiplied by the learning rate.
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            - ``weight`` : float64 or int64, sum of Hessian (second-order derivative of objective), summed over observations that fall in this node.
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            - ``count`` : int64, number of records in the training data that fall into this node.

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        Returns
        -------
        result : pandas DataFrame
            Returns a pandas DataFrame of the parsed model.
        """
        if not PANDAS_INSTALLED:
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            raise LightGBMError('This method cannot be run without pandas installed. '
                                'You must install pandas and restart your session to use this method.')
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        if self.num_trees() == 0:
            raise LightGBMError('There are no trees in this Booster and thus nothing to parse')

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        def _is_split_node(tree: Dict[str, Any]) -> bool:
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            return 'split_index' in tree.keys()

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        def create_node_record(
            tree: Dict[str, Any],
            node_depth: int = 1,
            tree_index: Optional[int] = None,
            feature_names: Optional[List[str]] = None,
            parent_node: Optional[str] = None
        ) -> Dict[str, Any]:

            def _get_node_index(
                tree: Dict[str, Any],
                tree_index: Optional[int]
            ) -> str:
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                tree_num = f'{tree_index}-' if tree_index is not None else ''
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                is_split = _is_split_node(tree)
                node_type = 'S' if is_split else 'L'
                # if a single node tree it won't have `leaf_index` so return 0
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                node_num = tree.get('split_index' if is_split else 'leaf_index', 0)
                return f"{tree_num}{node_type}{node_num}"
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            def _get_split_feature(
                tree: Dict[str, Any],
                feature_names: Optional[List[str]]
            ) -> Optional[str]:
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                if _is_split_node(tree):
                    if feature_names is not None:
                        feature_name = feature_names[tree['split_feature']]
                    else:
                        feature_name = tree['split_feature']
                else:
                    feature_name = None
                return feature_name

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            def _is_single_node_tree(tree: Dict[str, Any]) -> bool:
3391
                return set(tree.keys()) == {'leaf_value'}
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            # Create the node record, and populate universal data members
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            node: Dict[str, Union[int, str, None]] = OrderedDict()
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            node['tree_index'] = tree_index
            node['node_depth'] = node_depth
            node['node_index'] = _get_node_index(tree, tree_index)
            node['left_child'] = None
            node['right_child'] = None
            node['parent_index'] = parent_node
            node['split_feature'] = _get_split_feature(tree, feature_names)
            node['split_gain'] = None
            node['threshold'] = None
            node['decision_type'] = None
            node['missing_direction'] = None
            node['missing_type'] = None
            node['value'] = None
            node['weight'] = None
            node['count'] = None

            # Update values to reflect node type (leaf or split)
            if _is_split_node(tree):
                node['left_child'] = _get_node_index(tree['left_child'], tree_index)
                node['right_child'] = _get_node_index(tree['right_child'], tree_index)
                node['split_gain'] = tree['split_gain']
                node['threshold'] = tree['threshold']
                node['decision_type'] = tree['decision_type']
                node['missing_direction'] = 'left' if tree['default_left'] else 'right'
                node['missing_type'] = tree['missing_type']
                node['value'] = tree['internal_value']
                node['weight'] = tree['internal_weight']
                node['count'] = tree['internal_count']
            else:
                node['value'] = tree['leaf_value']
                if not _is_single_node_tree(tree):
                    node['weight'] = tree['leaf_weight']
                    node['count'] = tree['leaf_count']

            return node

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        def tree_dict_to_node_list(
            tree: Dict[str, Any],
            node_depth: int = 1,
            tree_index: Optional[int] = None,
            feature_names: Optional[List[str]] = None,
            parent_node: Optional[str] = None
        ) -> List[Dict[str, Any]]:
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            node = create_node_record(tree=tree,
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                                      node_depth=node_depth,
                                      tree_index=tree_index,
                                      feature_names=feature_names,
                                      parent_node=parent_node)

            res = [node]

            if _is_split_node(tree):
                # traverse the next level of the tree
                children = ['left_child', 'right_child']
                for child in children:
                    subtree_list = tree_dict_to_node_list(
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                        tree=tree[child],
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                        node_depth=node_depth + 1,
                        tree_index=tree_index,
                        feature_names=feature_names,
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                        parent_node=node['node_index']
                    )
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                    # In tree format, "subtree_list" is a list of node records (dicts),
                    # and we add node to the list.
                    res.extend(subtree_list)
            return res

        model_dict = self.dump_model()
        feature_names = model_dict['feature_names']
        model_list = []
        for tree in model_dict['tree_info']:
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            model_list.extend(tree_dict_to_node_list(tree=tree['tree_structure'],
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                                                     tree_index=tree['tree_index'],
                                                     feature_names=feature_names))

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        return pd_DataFrame(model_list, columns=model_list[0].keys())
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    def set_train_data_name(self, name: str) -> "Booster":
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        """Set the name to the training Dataset.

        Parameters
        ----------
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        name : str
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            Name for the training Dataset.

        Returns
        -------
        self : Booster
            Booster with set training Dataset name.
3485
        """
3486
        self._train_data_name = name
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        return self
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3489
    def add_valid(self, data: Dataset, name: str) -> "Booster":
3490
        """Add validation data.
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        Parameters
        ----------
        data : Dataset
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            Validation data.
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        name : str
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            Name of validation data.
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        Returns
        -------
        self : Booster
            Booster with set validation data.
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        """
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        if not isinstance(data, Dataset):
3505
            raise TypeError(f'Validation data should be Dataset instance, met {type(data).__name__}')
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        if data._predictor is not self.__init_predictor:
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            raise LightGBMError("Add validation data failed, "
                                "you should use same predictor for these data")
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        _safe_call(_LIB.LGBM_BoosterAddValidData(
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            self._handle,
            data.construct()._handle))
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        self.valid_sets.append(data)
        self.name_valid_sets.append(name)
        self.__num_dataset += 1
        self.__inner_predict_buffer.append(None)
        self.__is_predicted_cur_iter.append(False)
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        return self
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3519
    def reset_parameter(self, params: Dict[str, Any]) -> "Booster":
3520
        """Reset parameters of Booster.
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        Parameters
        ----------
        params : dict
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            New parameters for Booster.
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        Returns
        -------
        self : Booster
            Booster with new parameters.
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        """
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        params_str = _param_dict_to_str(params)
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        if params_str:
            _safe_call(_LIB.LGBM_BoosterResetParameter(
3535
                self._handle,
3536
                _c_str(params_str)))
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        self.params.update(params)
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        return self
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    def update(
        self,
        train_set: Optional[Dataset] = None,
        fobj: Optional[_LGBM_CustomObjectiveFunction] = None
    ) -> bool:
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        """Update Booster for one iteration.
3546

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        Parameters
        ----------
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        train_set : Dataset or None, optional (default=None)
            Training data.
            If None, last training data is used.
        fobj : callable or None, optional (default=None)
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            Customized objective function.
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            Should accept two parameters: preds, train_data,
            and return (grad, hess).

3557
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
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                    The predicted values.
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                    Predicted values are returned before any transformation,
                    e.g. they are raw margin instead of probability of positive class for binary task.
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                train_data : Dataset
                    The training dataset.
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                grad : numpy 1-D array or numpy 2-D array (for multi-class task)
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                    The value of the first order derivative (gradient) of the loss
                    with respect to the elements of preds for each sample point.
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                hess : numpy 1-D array or numpy 2-D array (for multi-class task)
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                    The value of the second order derivative (Hessian) of the loss
                    with respect to the elements of preds for each sample point.
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3570
            For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes],
3571
            and grad and hess should be returned in the same format.
3572

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        Returns
        -------
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        is_finished : bool
            Whether the update was successfully finished.
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        """
3578
        # need reset training data
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        if train_set is None and self.train_set_version != self.train_set.version:
            train_set = self.train_set
            is_the_same_train_set = False
        else:
            is_the_same_train_set = train_set is self.train_set and self.train_set_version == train_set.version
        if train_set is not None and not is_the_same_train_set:
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            if not isinstance(train_set, Dataset):
3586
                raise TypeError(f'Training data should be Dataset instance, met {type(train_set).__name__}')
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            if train_set._predictor is not self.__init_predictor:
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                raise LightGBMError("Replace training data failed, "
                                    "you should use same predictor for these data")
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            self.train_set = train_set
            _safe_call(_LIB.LGBM_BoosterResetTrainingData(
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                self._handle,
                self.train_set.construct()._handle))
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            self.__inner_predict_buffer[0] = None
3595
            self.train_set_version = self.train_set.version
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        is_finished = ctypes.c_int(0)
        if fobj is None:
3598
            if self.__set_objective_to_none:
3599
                raise LightGBMError('Cannot update due to null objective function.')
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            _safe_call(_LIB.LGBM_BoosterUpdateOneIter(
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                self._handle,
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                ctypes.byref(is_finished)))
3603
            self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
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            return is_finished.value == 1
        else:
3606
            if not self.__set_objective_to_none:
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                self.reset_parameter({"objective": "none"}).__set_objective_to_none = True
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            grad, hess = fobj(self.__inner_predict(0), self.train_set)
            return self.__boost(grad, hess)

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    def __boost(
        self,
        grad: np.ndarray,
        hess: np.ndarray
    ) -> bool:
3616
        """Boost Booster for one iteration with customized gradient statistics.
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        .. note::

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            Score is returned before any transformation,
            e.g. it is raw margin instead of probability of positive class for binary task.
3622
            For multi-class task, score are numpy 2-D array of shape = [n_samples, n_classes],
3623
            and grad and hess should be returned in the same format.
3624

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        Parameters
        ----------
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        grad : numpy 1-D array or numpy 2-D array (for multi-class task)
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            The value of the first order derivative (gradient) of the loss
            with respect to the elements of score for each sample point.
3630
        hess : numpy 1-D array or numpy 2-D array (for multi-class task)
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            The value of the second order derivative (Hessian) of the loss
            with respect to the elements of score for each sample point.
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        Returns
        -------
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        is_finished : bool
            Whether the boost was successfully finished.
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        """
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        if self.__num_class > 1:
            grad = grad.ravel(order='F')
            hess = hess.ravel(order='F')
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        grad = _list_to_1d_numpy(grad, dtype=np.float32, name='gradient')
        hess = _list_to_1d_numpy(hess, dtype=np.float32, name='hessian')
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        assert grad.flags.c_contiguous
        assert hess.flags.c_contiguous
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        if len(grad) != len(hess):
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            raise ValueError(f"Lengths of gradient ({len(grad)}) and Hessian ({len(hess)}) don't match")
        num_train_data = self.train_set.num_data()
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        if len(grad) != num_train_data * self.__num_class:
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            raise ValueError(
                f"Lengths of gradient ({len(grad)}) and Hessian ({len(hess)}) "
                f"don't match training data length ({num_train_data}) * "
3653
                f"number of models per one iteration ({self.__num_class})"
3654
            )
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        is_finished = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterUpdateOneIterCustom(
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            self._handle,
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            grad.ctypes.data_as(ctypes.POINTER(ctypes.c_float)),
            hess.ctypes.data_as(ctypes.POINTER(ctypes.c_float)),
            ctypes.byref(is_finished)))
3661
        self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
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        return is_finished.value == 1

3664
    def rollback_one_iter(self) -> "Booster":
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        """Rollback one iteration.

        Returns
        -------
        self : Booster
            Booster with rolled back one iteration.
        """
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        _safe_call(_LIB.LGBM_BoosterRollbackOneIter(
3673
            self._handle))
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        self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
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        return self
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3677
    def current_iteration(self) -> int:
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        """Get the index of the current iteration.

        Returns
        -------
        cur_iter : int
            The index of the current iteration.
        """
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        out_cur_iter = ctypes.c_int(0)
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        _safe_call(_LIB.LGBM_BoosterGetCurrentIteration(
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            self._handle,
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            ctypes.byref(out_cur_iter)))
        return out_cur_iter.value

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    def num_model_per_iteration(self) -> int:
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        """Get number of models per iteration.

        Returns
        -------
        model_per_iter : int
            The number of models per iteration.
        """
        model_per_iter = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterNumModelPerIteration(
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            self._handle,
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            ctypes.byref(model_per_iter)))
        return model_per_iter.value

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    def num_trees(self) -> int:
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        """Get number of weak sub-models.

        Returns
        -------
        num_trees : int
            The number of weak sub-models.
        """
        num_trees = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterNumberOfTotalModel(
3715
            self._handle,
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            ctypes.byref(num_trees)))
        return num_trees.value

3719
    def upper_bound(self) -> float:
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        """Get upper bound value of a model.

        Returns
        -------
3724
        upper_bound : float
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            Upper bound value of the model.
        """
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetUpperBoundValue(
3729
            self._handle,
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            ctypes.byref(ret)))
        return ret.value

3733
    def lower_bound(self) -> float:
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        """Get lower bound value of a model.

        Returns
        -------
3738
        lower_bound : float
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            Lower bound value of the model.
        """
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetLowerBoundValue(
3743
            self._handle,
3744
3745
3746
            ctypes.byref(ret)))
        return ret.value

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    def eval(
        self,
        data: Dataset,
        name: str,
        feval: Optional[Union[_LGBM_CustomEvalFunction, List[_LGBM_CustomEvalFunction]]] = None
    ) -> List[_LGBM_BoosterEvalMethodResultType]:
3753
        """Evaluate for data.
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        Parameters
        ----------
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        data : Dataset
            Data for the evaluating.
3759
        name : str
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            Name of the data.
3761
        feval : callable, list of callable, or None, optional (default=None)
3762
            Customized evaluation function.
3763
            Each evaluation function should accept two parameters: preds, eval_data,
3764
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
3765

3766
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
3767
                    The predicted values.
3768
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
3769
                    If custom objective function is used, predicted values are returned before any transformation,
3770
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
3771
                eval_data : Dataset
3772
                    A ``Dataset`` to evaluate.
3773
                eval_name : str
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                    The name of evaluation function (without whitespace).
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                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

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        Returns
        -------
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        result : list
3783
            List with (dataset_name, eval_name, eval_result, is_higher_better) tuples.
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        """
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        if not isinstance(data, Dataset):
            raise TypeError("Can only eval for Dataset instance")
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        data_idx = -1
        if data is self.train_set:
            data_idx = 0
        else:
3791
            for i in range(len(self.valid_sets)):
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                if data is self.valid_sets[i]:
                    data_idx = i + 1
                    break
3795
        # need to push new valid data
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        if data_idx == -1:
            self.add_valid(data, name)
            data_idx = self.__num_dataset - 1

        return self.__inner_eval(name, data_idx, feval)

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    def eval_train(
        self,
        feval: Optional[Union[_LGBM_CustomEvalFunction, List[_LGBM_CustomEvalFunction]]] = None
    ) -> List[_LGBM_BoosterEvalMethodResultType]:
3806
        """Evaluate for training data.
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        Parameters
        ----------
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        feval : callable, list of callable, or None, optional (default=None)
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            Customized evaluation function.
3812
            Each evaluation function should accept two parameters: preds, eval_data,
3813
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
3814

3815
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
3816
                    The predicted values.
3817
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
3818
                    If custom objective function is used, predicted values are returned before any transformation,
3819
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
Akshita Dixit's avatar
Akshita Dixit committed
3820
                eval_data : Dataset
3821
                    The training dataset.
3822
                eval_name : str
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                    The name of evaluation function (without whitespace).
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                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

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        Returns
        -------
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        result : list
3832
            List with (train_dataset_name, eval_name, eval_result, is_higher_better) tuples.
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3833
        """
3834
        return self.__inner_eval(self._train_data_name, 0, feval)
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    def eval_valid(
        self,
        feval: Optional[Union[_LGBM_CustomEvalFunction, List[_LGBM_CustomEvalFunction]]] = None
    ) -> List[_LGBM_BoosterEvalMethodResultType]:
3840
        """Evaluate for validation data.
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3841
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        Parameters
        ----------
3844
        feval : callable, list of callable, or None, optional (default=None)
3845
            Customized evaluation function.
3846
            Each evaluation function should accept two parameters: preds, eval_data,
3847
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
3848

3849
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
3850
                    The predicted values.
3851
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
3852
                    If custom objective function is used, predicted values are returned before any transformation,
3853
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
Akshita Dixit's avatar
Akshita Dixit committed
3854
                eval_data : Dataset
3855
                    The validation dataset.
3856
                eval_name : str
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                    The name of evaluation function (without whitespace).
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                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

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3863
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        Returns
        -------
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3865
        result : list
3866
            List with (validation_dataset_name, eval_name, eval_result, is_higher_better) tuples.
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        """
3868
        return [item for i in range(1, self.__num_dataset)
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                for item in self.__inner_eval(self.name_valid_sets[i - 1], i, feval)]
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    def save_model(
        self,
        filename: Union[str, Path],
        num_iteration: Optional[int] = None,
        start_iteration: int = 0,
        importance_type: str = 'split'
    ) -> "Booster":
3878
        """Save Booster to file.
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        Parameters
        ----------
3882
        filename : str or pathlib.Path
3883
            Filename to save Booster.
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        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be saved.
            If None, if the best iteration exists, it is saved; otherwise, all iterations are saved.
            If <= 0, all iterations are saved.
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3888
        start_iteration : int, optional (default=0)
3889
            Start index of the iteration that should be saved.
3890
        importance_type : str, optional (default="split")
3891
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            What type of feature importance should be saved.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
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        Returns
        -------
        self : Booster
            Returns self.
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        """
3900
        if num_iteration is None:
3901
            num_iteration = self.best_iteration
3902
        importance_type_int = _FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
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3903
        _safe_call(_LIB.LGBM_BoosterSaveModel(
3904
            self._handle,
3905
            ctypes.c_int(start_iteration),
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3906
            ctypes.c_int(num_iteration),
3907
            ctypes.c_int(importance_type_int),
3908
            _c_str(str(filename))))
3909
        _dump_pandas_categorical(self.pandas_categorical, filename)
Nikita Titov's avatar
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3910
        return self
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3911

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3916
    def shuffle_models(
        self,
        start_iteration: int = 0,
        end_iteration: int = -1
    ) -> "Booster":
3917
        """Shuffle models.
Nikita Titov's avatar
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3918

3919
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3921
        Parameters
        ----------
        start_iteration : int, optional (default=0)
3922
            The first iteration that will be shuffled.
3923
3924
        end_iteration : int, optional (default=-1)
            The last iteration that will be shuffled.
3925
            If <= 0, means the last available iteration.
3926

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        Returns
        -------
        self : Booster
            Booster with shuffled models.
3931
        """
3932
        _safe_call(_LIB.LGBM_BoosterShuffleModels(
3933
            self._handle,
Guolin Ke's avatar
Guolin Ke committed
3934
3935
            ctypes.c_int(start_iteration),
            ctypes.c_int(end_iteration)))
Nikita Titov's avatar
Nikita Titov committed
3936
        return self
3937

3938
    def model_from_string(self, model_str: str) -> "Booster":
3939
3940
3941
3942
        """Load Booster from a string.

        Parameters
        ----------
3943
        model_str : str
3944
3945
3946
3947
            Model will be loaded from this string.

        Returns
        -------
Nikita Titov's avatar
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3948
        self : Booster
3949
3950
            Loaded Booster object.
        """
3951
3952
3953
        # ensure that existing Booster is freed before replacing it
        # with a new one createdfrom file
        _safe_call(_LIB.LGBM_BoosterFree(self._handle))
3954
        self._free_buffer()
3955
        self._handle = ctypes.c_void_p()
3956
3957
        out_num_iterations = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterLoadModelFromString(
3958
            _c_str(model_str),
3959
            ctypes.byref(out_num_iterations),
3960
            ctypes.byref(self._handle)))
3961
3962
        out_num_class = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetNumClasses(
3963
            self._handle,
3964
3965
            ctypes.byref(out_num_class)))
        self.__num_class = out_num_class.value
3966
        self.pandas_categorical = _load_pandas_categorical(model_str=model_str)
3967
3968
        return self

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3974
    def model_to_string(
        self,
        num_iteration: Optional[int] = None,
        start_iteration: int = 0,
        importance_type: str = 'split'
    ) -> str:
3975
        """Save Booster to string.
3976

3977
3978
3979
3980
3981
3982
        Parameters
        ----------
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be saved.
            If None, if the best iteration exists, it is saved; otherwise, all iterations are saved.
            If <= 0, all iterations are saved.
Nikita Titov's avatar
Nikita Titov committed
3983
        start_iteration : int, optional (default=0)
3984
            Start index of the iteration that should be saved.
3985
        importance_type : str, optional (default="split")
3986
3987
3988
            What type of feature importance should be saved.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
3989
3990
3991

        Returns
        -------
3992
        str_repr : str
3993
3994
            String representation of Booster.
        """
3995
        if num_iteration is None:
3996
            num_iteration = self.best_iteration
3997
        importance_type_int = _FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
3998
        buffer_len = 1 << 20
3999
        tmp_out_len = ctypes.c_int64(0)
4000
4001
4002
        string_buffer = ctypes.create_string_buffer(buffer_len)
        ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
        _safe_call(_LIB.LGBM_BoosterSaveModelToString(
4003
            self._handle,
4004
            ctypes.c_int(start_iteration),
4005
            ctypes.c_int(num_iteration),
4006
            ctypes.c_int(importance_type_int),
4007
            ctypes.c_int64(buffer_len),
4008
4009
4010
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
4011
        # if buffer length is not long enough, re-allocate a buffer
4012
4013
4014
4015
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
            ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
            _safe_call(_LIB.LGBM_BoosterSaveModelToString(
4016
                self._handle,
4017
                ctypes.c_int(start_iteration),
4018
                ctypes.c_int(num_iteration),
4019
                ctypes.c_int(importance_type_int),
4020
                ctypes.c_int64(actual_len),
4021
4022
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
4023
        ret = string_buffer.value.decode('utf-8')
4024
4025
        ret += _dump_pandas_categorical(self.pandas_categorical)
        return ret
4026

4027
4028
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4030
4031
4032
4033
    def dump_model(
        self,
        num_iteration: Optional[int] = None,
        start_iteration: int = 0,
        importance_type: str = 'split',
        object_hook: Optional[Callable[[Dict[str, Any]], Dict[str, Any]]] = None
    ) -> Dict[str, Any]:
Nikita Titov's avatar
Nikita Titov committed
4034
        """Dump Booster to JSON format.
wxchan's avatar
wxchan committed
4035

4036
4037
        Parameters
        ----------
4038
4039
4040
4041
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be dumped.
            If None, if the best iteration exists, it is dumped; otherwise, all iterations are dumped.
            If <= 0, all iterations are dumped.
Nikita Titov's avatar
Nikita Titov committed
4042
        start_iteration : int, optional (default=0)
4043
            Start index of the iteration that should be dumped.
4044
        importance_type : str, optional (default="split")
4045
4046
4047
            What type of feature importance should be dumped.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
4048
4049
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4051
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        object_hook : callable or None, optional (default=None)
            If not None, ``object_hook`` is a function called while parsing the json
            string returned by the C API. It may be used to alter the json, to store
            specific values while building the json structure. It avoids
            walking through the structure again. It saves a significant amount
            of time if the number of trees is huge.
            Signature is ``def object_hook(node: dict) -> dict``.
            None is equivalent to ``lambda node: node``.
            See documentation of ``json.loads()`` for further details.
4057

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4059
        Returns
        -------
4060
        json_repr : dict
Nikita Titov's avatar
Nikita Titov committed
4061
            JSON format of Booster.
wxchan's avatar
wxchan committed
4062
        """
4063
        if num_iteration is None:
4064
            num_iteration = self.best_iteration
4065
        importance_type_int = _FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
wxchan's avatar
wxchan committed
4066
        buffer_len = 1 << 20
4067
        tmp_out_len = ctypes.c_int64(0)
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wxchan committed
4068
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4070
        string_buffer = ctypes.create_string_buffer(buffer_len)
        ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
        _safe_call(_LIB.LGBM_BoosterDumpModel(
4071
            self._handle,
4072
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
4073
            ctypes.c_int(num_iteration),
4074
            ctypes.c_int(importance_type_int),
4075
            ctypes.c_int64(buffer_len),
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wxchan committed
4076
            ctypes.byref(tmp_out_len),
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Guolin Ke committed
4077
            ptr_string_buffer))
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wxchan committed
4078
        actual_len = tmp_out_len.value
4079
        # if buffer length is not long enough, reallocate a buffer
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wxchan committed
4080
4081
4082
4083
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
            ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
            _safe_call(_LIB.LGBM_BoosterDumpModel(
4084
                self._handle,
4085
                ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
4086
                ctypes.c_int(num_iteration),
4087
                ctypes.c_int(importance_type_int),
4088
                ctypes.c_int64(actual_len),
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wxchan committed
4089
                ctypes.byref(tmp_out_len),
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Guolin Ke committed
4090
                ptr_string_buffer))
4091
        ret = json.loads(string_buffer.value.decode('utf-8'), object_hook=object_hook)
4092
        ret['pandas_categorical'] = json.loads(json.dumps(self.pandas_categorical,
4093
                                                          default=_json_default_with_numpy))
4094
        return ret
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4095

4096
4097
    def predict(
        self,
4098
        data: _LGBM_PredictDataType,
4099
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4101
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4106
        start_iteration: int = 0,
        num_iteration: Optional[int] = None,
        raw_score: bool = False,
        pred_leaf: bool = False,
        pred_contrib: bool = False,
        data_has_header: bool = False,
        validate_features: bool = False,
        **kwargs: Any
4107
    ) -> Union[np.ndarray, scipy.sparse.spmatrix, List[scipy.sparse.spmatrix]]:
4108
        """Make a prediction.
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4109
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4111

        Parameters
        ----------
4112
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
4113
            Data source for prediction.
4114
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
4115
        start_iteration : int, optional (default=0)
4116
            Start index of the iteration to predict.
4117
            If <= 0, starts from the first iteration.
4118
        num_iteration : int or None, optional (default=None)
4119
4120
4121
4122
            Total number of iterations used in the prediction.
            If None, if the best iteration exists and start_iteration <= 0, the best iteration is used;
            otherwise, all iterations from ``start_iteration`` are used (no limits).
            If <= 0, all iterations from ``start_iteration`` are used (no limits).
4123
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4125
4126
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        pred_leaf : bool, optional (default=False)
            Whether to predict leaf index.
4127
4128
        pred_contrib : bool, optional (default=False)
            Whether to predict feature contributions.
4129

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4136
            .. note::

                If you want to get more explanations for your model's predictions using SHAP values,
                like SHAP interaction values,
                you can install the shap package (https://github.com/slundberg/shap).
                Note that unlike the shap package, with ``pred_contrib`` we return a matrix with an extra
                column, where the last column is the expected value.
4137

4138
4139
        data_has_header : bool, optional (default=False)
            Whether the data has header.
4140
            Used only if data is str.
4141
4142
4143
        validate_features : bool, optional (default=False)
            If True, ensure that the features used to predict match the ones used to train.
            Used only if data is pandas DataFrame.
4144
4145
        **kwargs
            Other parameters for the prediction.
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        Returns
        -------
4149
        result : numpy array, scipy.sparse or list of scipy.sparse
4150
            Prediction result.
4151
            Can be sparse or a list of sparse objects (each element represents predictions for one class) for feature contributions (when ``pred_contrib=True``).
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4152
        """
4153
4154
4155
4156
        predictor = _InnerPredictor.from_booster(
            booster=self,
            pred_parameter=deepcopy(kwargs),
        )
4157
        if num_iteration is None:
4158
            if start_iteration <= 0:
4159
4160
4161
                num_iteration = self.best_iteration
            else:
                num_iteration = -1
4162
4163
4164
4165
4166
4167
4168
4169
4170
4171
        return predictor.predict(
            data=data,
            start_iteration=start_iteration,
            num_iteration=num_iteration,
            raw_score=raw_score,
            pred_leaf=pred_leaf,
            pred_contrib=pred_contrib,
            data_has_header=data_has_header,
            validate_features=validate_features
        )
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4172

4173
4174
    def refit(
        self,
4175
        data: _LGBM_TrainDataType,
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        label: _LGBM_LabelType,
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        decay_rate: float = 0.9,
        reference: Optional[Dataset] = None,
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        weight: Optional[_LGBM_WeightType] = None,
        group: Optional[_LGBM_GroupType] = None,
        init_score: Optional[_LGBM_InitScoreType] = None,
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        feature_name: _LGBM_FeatureNameConfiguration = 'auto',
        categorical_feature: _LGBM_CategoricalFeatureConfiguration = 'auto',
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        dataset_params: Optional[Dict[str, Any]] = None,
        free_raw_data: bool = True,
        validate_features: bool = False,
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        **kwargs
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    ) -> "Booster":
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        """Refit the existing Booster by new data.

        Parameters
        ----------
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        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array
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            Data source for refit.
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            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
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        label : list, numpy 1-D array or pandas Series / one-column DataFrame
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            Label for refit.
        decay_rate : float, optional (default=0.9)
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            Decay rate of refit,
            will use ``leaf_output = decay_rate * old_leaf_output + (1.0 - decay_rate) * new_leaf_output`` to refit trees.
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        reference : Dataset or None, optional (default=None)
            Reference for ``data``.
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            .. versionadded:: 4.0.0

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        weight : list, numpy 1-D array, pandas Series or None, optional (default=None)
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            Weight for each ``data`` instance. Weights should be non-negative.
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            .. versionadded:: 4.0.0

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        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
            Group/query size for ``data``.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
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            .. versionadded:: 4.0.0

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        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None, optional (default=None)
            Init score for ``data``.
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            .. versionadded:: 4.0.0

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        feature_name : list of str, or 'auto', optional (default="auto")
            Feature names for ``data``.
            If 'auto' and data is pandas DataFrame, data columns names are used.
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            .. versionadded:: 4.0.0

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        categorical_feature : list of str or int, or 'auto', optional (default="auto")
            Categorical features for ``data``.
            If list of int, interpreted as indices.
            If list of str, interpreted as feature names (need to specify ``feature_name`` as well).
            If 'auto' and data is pandas DataFrame, pandas unordered categorical columns are used.
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            All values in categorical features will be cast to int32 and thus should be less than int32 max value (2147483647).
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            Large values could be memory consuming. Consider using consecutive integers starting from zero.
            All negative values in categorical features will be treated as missing values.
            The output cannot be monotonically constrained with respect to a categorical feature.
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            Floating point numbers in categorical features will be rounded towards 0.
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            .. versionadded:: 4.0.0

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        dataset_params : dict or None, optional (default=None)
            Other parameters for Dataset ``data``.
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            .. versionadded:: 4.0.0

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        free_raw_data : bool, optional (default=True)
            If True, raw data is freed after constructing inner Dataset for ``data``.
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            .. versionadded:: 4.0.0

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        validate_features : bool, optional (default=False)
            If True, ensure that the features used to refit the model match the original ones.
            Used only if data is pandas DataFrame.
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            .. versionadded:: 4.0.0

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        **kwargs
            Other parameters for refit.
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            These parameters will be passed to ``predict`` method.
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        Returns
        -------
        result : Booster
            Refitted Booster.
        """
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        if self.__set_objective_to_none:
            raise LightGBMError('Cannot refit due to null objective function.')
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        if dataset_params is None:
            dataset_params = {}
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        predictor = _InnerPredictor.from_booster(
            booster=self,
            pred_parameter=deepcopy(kwargs)
        )
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        leaf_preds: np.ndarray = predictor.predict(  # type: ignore[assignment]
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            data=data,
            start_iteration=-1,
            pred_leaf=True,
            validate_features=validate_features
        )
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        nrow, ncol = leaf_preds.shape
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        out_is_linear = ctypes.c_int(0)
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        _safe_call(_LIB.LGBM_BoosterGetLinear(
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            self._handle,
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            ctypes.byref(out_is_linear)))
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        new_params = _choose_param_value(
            main_param_name="linear_tree",
            params=self.params,
            default_value=None
        )
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        new_params["linear_tree"] = bool(out_is_linear.value)
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        new_params.update(dataset_params)
        train_set = Dataset(
            data=data,
            label=label,
            reference=reference,
            weight=weight,
            group=group,
            init_score=init_score,
            feature_name=feature_name,
            categorical_feature=categorical_feature,
            params=new_params,
            free_raw_data=free_raw_data,
        )
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        new_params['refit_decay_rate'] = decay_rate
4308
        new_booster = Booster(new_params, train_set)
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        # Copy models
        _safe_call(_LIB.LGBM_BoosterMerge(
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            new_booster._handle,
            predictor._handle))
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        leaf_preds = leaf_preds.reshape(-1)
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        ptr_data, _, _ = _c_int_array(leaf_preds)
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        _safe_call(_LIB.LGBM_BoosterRefit(
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            new_booster._handle,
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            ptr_data,
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            ctypes.c_int32(nrow),
            ctypes.c_int32(ncol)))
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        new_booster._network = self._network
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        return new_booster

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    def get_leaf_output(self, tree_id: int, leaf_id: int) -> float:
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        """Get the output of a leaf.

        Parameters
        ----------
        tree_id : int
            The index of the tree.
        leaf_id : int
            The index of the leaf in the tree.

        Returns
        -------
        result : float
            The output of the leaf.
        """
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        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetLeafValue(
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            self._handle,
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            ctypes.c_int(tree_id),
            ctypes.c_int(leaf_id),
            ctypes.byref(ret)))
        return ret.value

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    def set_leaf_output(
        self,
        tree_id: int,
        leaf_id: int,
        value: float,
    ) -> 'Booster':
        """Set the output of a leaf.

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        .. versionadded:: 4.0.0

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        Parameters
        ----------
        tree_id : int
            The index of the tree.
        leaf_id : int
            The index of the leaf in the tree.
        value : float
            Value to set as the output of the leaf.

        Returns
        -------
        self : Booster
            Booster with the leaf output set.
        """
        _safe_call(
            _LIB.LGBM_BoosterSetLeafValue(
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                self._handle,
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                ctypes.c_int(tree_id),
                ctypes.c_int(leaf_id),
                ctypes.c_double(value)
            )
        )
        return self

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    def num_feature(self) -> int:
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        """Get number of features.

        Returns
        -------
        num_feature : int
            The number of features.
        """
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        out_num_feature = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetNumFeature(
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            self._handle,
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            ctypes.byref(out_num_feature)))
        return out_num_feature.value

4394
    def feature_name(self) -> List[str]:
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        """Get names of features.
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        Returns
        -------
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        result : list of str
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            List with names of features.
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        """
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        num_feature = self.num_feature()
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        # Get name of features
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        tmp_out_len = ctypes.c_int(0)
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        reserved_string_buffer_size = 255
        required_string_buffer_size = ctypes.c_size_t(0)
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        string_buffers = [ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(num_feature)]
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        ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
        _safe_call(_LIB.LGBM_BoosterGetFeatureNames(
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            self._handle,
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            ctypes.c_int(num_feature),
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            ctypes.byref(tmp_out_len),
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            ctypes.c_size_t(reserved_string_buffer_size),
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            ctypes.byref(required_string_buffer_size),
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            ptr_string_buffers))
        if num_feature != tmp_out_len.value:
            raise ValueError("Length of feature names doesn't equal with num_feature")
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        actual_string_buffer_size = required_string_buffer_size.value
        # if buffer length is not long enough, reallocate buffers
        if reserved_string_buffer_size < actual_string_buffer_size:
            string_buffers = [ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(num_feature)]
            ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
            _safe_call(_LIB.LGBM_BoosterGetFeatureNames(
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                self._handle,
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                ctypes.c_int(num_feature),
                ctypes.byref(tmp_out_len),
                ctypes.c_size_t(actual_string_buffer_size),
                ctypes.byref(required_string_buffer_size),
                ptr_string_buffers))
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        return [string_buffers[i].value.decode('utf-8') for i in range(num_feature)]
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    def feature_importance(
        self,
        importance_type: str = 'split',
        iteration: Optional[int] = None
    ) -> np.ndarray:
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        """Get feature importances.
4438

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        Parameters
        ----------
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        importance_type : str, optional (default="split")
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            How the importance is calculated.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
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        iteration : int or None, optional (default=None)
            Limit number of iterations in the feature importance calculation.
            If None, if the best iteration exists, it is used; otherwise, all trees are used.
            If <= 0, all trees are used (no limits).
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        Returns
        -------
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        result : numpy array
            Array with feature importances.
4454
        """
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        if iteration is None:
            iteration = self.best_iteration
4457
        importance_type_int = _FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
4458
        result = np.empty(self.num_feature(), dtype=np.float64)
4459
        _safe_call(_LIB.LGBM_BoosterFeatureImportance(
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            self._handle,
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            ctypes.c_int(iteration),
            ctypes.c_int(importance_type_int),
            result.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
4464
        if importance_type_int == _C_API_FEATURE_IMPORTANCE_SPLIT:
4465
            return result.astype(np.int32)
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        else:
            return result
4468

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    def get_split_value_histogram(
        self,
        feature: Union[int, str],
        bins: Optional[Union[int, str]] = None,
        xgboost_style: bool = False
    ) -> Union[Tuple[np.ndarray, np.ndarray], np.ndarray, pd_DataFrame]:
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        """Get split value histogram for the specified feature.

        Parameters
        ----------
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        feature : int or str
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            The feature name or index the histogram is calculated for.
            If int, interpreted as index.
4482
            If str, interpreted as name.
4483

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            .. warning::

                Categorical features are not supported.
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        bins : int, str or None, optional (default=None)
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            The maximum number of bins.
            If None, or int and > number of unique split values and ``xgboost_style=True``,
            the number of bins equals number of unique split values.
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            If str, it should be one from the list of the supported values by ``numpy.histogram()`` function.
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        xgboost_style : bool, optional (default=False)
            Whether the returned result should be in the same form as it is in XGBoost.
            If False, the returned value is tuple of 2 numpy arrays as it is in ``numpy.histogram()`` function.
            If True, the returned value is matrix, in which the first column is the right edges of non-empty bins
            and the second one is the histogram values.

        Returns
        -------
        result_tuple : tuple of 2 numpy arrays
            If ``xgboost_style=False``, the values of the histogram of used splitting values for the specified feature
            and the bin edges.
        result_array_like : numpy array or pandas DataFrame (if pandas is installed)
            If ``xgboost_style=True``, the histogram of used splitting values for the specified feature.
        """
4507
        def add(root: Dict[str, Any]) -> None:
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            """Recursively add thresholds."""
            if 'split_index' in root:  # non-leaf
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                if feature_names is not None and isinstance(feature, str):
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                    split_feature = feature_names[root['split_feature']]
                else:
                    split_feature = root['split_feature']
                if split_feature == feature:
4515
                    if isinstance(root['threshold'], str):
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                        raise LightGBMError('Cannot compute split value histogram for the categorical feature')
                    else:
                        values.append(root['threshold'])
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                add(root['left_child'])
                add(root['right_child'])

        model = self.dump_model()
        feature_names = model.get('feature_names')
        tree_infos = model['tree_info']
4525
        values: List[float] = []
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        for tree_info in tree_infos:
            add(tree_info['tree_structure'])

4529
        if bins is None or isinstance(bins, int) and xgboost_style:
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            n_unique = len(np.unique(values))
            bins = max(min(n_unique, bins) if bins is not None else n_unique, 1)
        hist, bin_edges = np.histogram(values, bins=bins)
        if xgboost_style:
            ret = np.column_stack((bin_edges[1:], hist))
            ret = ret[ret[:, 1] > 0]
            if PANDAS_INSTALLED:
4537
                return pd_DataFrame(ret, columns=['SplitValue', 'Count'])
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            else:
                return ret
        else:
            return hist, bin_edges

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    def __inner_eval(
        self,
        data_name: str,
        data_idx: int,
4547
        feval: Optional[Union[_LGBM_CustomEvalFunction, List[_LGBM_CustomEvalFunction]]]
4548
    ) -> List[_LGBM_BoosterEvalMethodResultType]:
4549
        """Evaluate training or validation data."""
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        if data_idx >= self.__num_dataset:
4551
            raise ValueError("Data_idx should be smaller than number of dataset")
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        self.__get_eval_info()
        ret = []
        if self.__num_inner_eval > 0:
4555
            result = np.empty(self.__num_inner_eval, dtype=np.float64)
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            tmp_out_len = ctypes.c_int(0)
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4557
            _safe_call(_LIB.LGBM_BoosterGetEval(
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                self._handle,
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                ctypes.c_int(data_idx),
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                ctypes.byref(tmp_out_len),
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                result.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
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            if tmp_out_len.value != self.__num_inner_eval:
4563
                raise ValueError("Wrong length of eval results")
4564
            for i in range(self.__num_inner_eval):
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                ret.append((data_name, self.__name_inner_eval[i],
                            result[i], self.__higher_better_inner_eval[i]))
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        if callable(feval):
            feval = [feval]
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        if feval is not None:
            if data_idx == 0:
                cur_data = self.train_set
            else:
                cur_data = self.valid_sets[data_idx - 1]
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            for eval_function in feval:
                if eval_function is None:
                    continue
                feval_ret = eval_function(self.__inner_predict(data_idx), cur_data)
                if isinstance(feval_ret, list):
                    for eval_name, val, is_higher_better in feval_ret:
                        ret.append((data_name, eval_name, val, is_higher_better))
                else:
                    eval_name, val, is_higher_better = feval_ret
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                    ret.append((data_name, eval_name, val, is_higher_better))
        return ret

4586
    def __inner_predict(self, data_idx: int) -> np.ndarray:
4587
        """Predict for training and validation dataset."""
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        if data_idx >= self.__num_dataset:
4589
            raise ValueError("Data_idx should be smaller than number of dataset")
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        if self.__inner_predict_buffer[data_idx] is None:
            if data_idx == 0:
                n_preds = self.train_set.num_data() * self.__num_class
            else:
                n_preds = self.valid_sets[data_idx - 1].num_data() * self.__num_class
4595
            self.__inner_predict_buffer[data_idx] = np.empty(n_preds, dtype=np.float64)
4596
        # avoid to predict many time in one iteration
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        if not self.__is_predicted_cur_iter[data_idx]:
            tmp_out_len = ctypes.c_int64(0)
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            data_ptr = self.__inner_predict_buffer[data_idx].ctypes.data_as(ctypes.POINTER(ctypes.c_double))  # type: ignore[union-attr]
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            _safe_call(_LIB.LGBM_BoosterGetPredict(
4601
                self._handle,
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                ctypes.c_int(data_idx),
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                ctypes.byref(tmp_out_len),
                data_ptr))
4605
            if tmp_out_len.value != len(self.__inner_predict_buffer[data_idx]):  # type: ignore[arg-type]
4606
                raise ValueError(f"Wrong length of predict results for data {data_idx}")
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            self.__is_predicted_cur_iter[data_idx] = True
4608
        result: np.ndarray = self.__inner_predict_buffer[data_idx]  # type: ignore[assignment]
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4612
        if self.__num_class > 1:
            num_data = result.size // self.__num_class
            result = result.reshape(num_data, self.__num_class, order='F')
        return result
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4614
    def __get_eval_info(self) -> None:
4615
        """Get inner evaluation count and names."""
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        if self.__need_reload_eval_info:
            self.__need_reload_eval_info = False
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            out_num_eval = ctypes.c_int(0)
4619
            # Get num of inner evals
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            _safe_call(_LIB.LGBM_BoosterGetEvalCounts(
4621
                self._handle,
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                ctypes.byref(out_num_eval)))
            self.__num_inner_eval = out_num_eval.value
            if self.__num_inner_eval > 0:
4625
                # Get name of eval metrics
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                tmp_out_len = ctypes.c_int(0)
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4629
                reserved_string_buffer_size = 255
                required_string_buffer_size = ctypes.c_size_t(0)
                string_buffers = [
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                    ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(self.__num_inner_eval)
4631
                ]
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                ptr_string_buffers = (ctypes.c_char_p * self.__num_inner_eval)(*map(ctypes.addressof, string_buffers))
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                _safe_call(_LIB.LGBM_BoosterGetEvalNames(
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                    self._handle,
4635
                    ctypes.c_int(self.__num_inner_eval),
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                    ctypes.byref(tmp_out_len),
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                    ctypes.c_size_t(reserved_string_buffer_size),
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                    ctypes.byref(required_string_buffer_size),
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                    ptr_string_buffers))
                if self.__num_inner_eval != tmp_out_len.value:
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                    raise ValueError("Length of eval names doesn't equal with num_evals")
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                actual_string_buffer_size = required_string_buffer_size.value
                # if buffer length is not long enough, reallocate buffers
                if reserved_string_buffer_size < actual_string_buffer_size:
                    string_buffers = [
                        ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(self.__num_inner_eval)
                    ]
                    ptr_string_buffers = (ctypes.c_char_p * self.__num_inner_eval)(*map(ctypes.addressof, string_buffers))
                    _safe_call(_LIB.LGBM_BoosterGetEvalNames(
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                        self._handle,
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                        ctypes.c_int(self.__num_inner_eval),
                        ctypes.byref(tmp_out_len),
                        ctypes.c_size_t(actual_string_buffer_size),
                        ctypes.byref(required_string_buffer_size),
                        ptr_string_buffers))
                self.__name_inner_eval = [
                    string_buffers[i].value.decode('utf-8') for i in range(self.__num_inner_eval)
                ]
                self.__higher_better_inner_eval = [
                    name.startswith(('auc', 'ndcg@', 'map@', 'average_precision')) for name in self.__name_inner_eval
                ]