basic.py 192 KB
Newer Older
wxchan's avatar
wxchan committed
1
# coding: utf-8
2
"""Wrapper for C API of LightGBM."""
3
import abc
wxchan's avatar
wxchan committed
4
import ctypes
5
import inspect
6
import json
wxchan's avatar
wxchan committed
7
import warnings
8
from collections import OrderedDict
9
from copy import deepcopy
10
from enum import Enum
11
from functools import wraps
12
from os import SEEK_END, environ
13
14
from os.path import getsize
from pathlib import Path
15
from tempfile import NamedTemporaryFile
16
from typing import TYPE_CHECKING, Any, Callable, Dict, Iterable, List, Optional, Set, Tuple, Union
wxchan's avatar
wxchan committed
17
18
19
20

import numpy as np
import scipy.sparse

21
from .compat import (PANDAS_INSTALLED, PYARROW_INSTALLED, arrow_cffi, arrow_is_floating, arrow_is_integer, concat,
22
23
                     dt_DataTable, pa_Array, pa_ChunkedArray, pa_compute, pa_Table, pd_CategoricalDtype, pd_DataFrame,
                     pd_Series)
wxchan's avatar
wxchan committed
24
25
from .libpath import find_lib_path

26
27
28
if TYPE_CHECKING:
    from typing import Literal

29
30
31
32
33
34
35
    # typing.TypeGuard was only introduced in Python 3.10
    try:
        from typing import TypeGuard
    except ImportError:
        from typing_extensions import TypeGuard


36
37
38
39
40
41
42
43
44
__all__ = [
    'Booster',
    'Dataset',
    'LGBMDeprecationWarning',
    'LightGBMError',
    'register_logger',
    'Sequence',
]

45
_BoosterHandle = ctypes.c_void_p
46
_DatasetHandle = ctypes.c_void_p
47
48
49
50
_ctypes_int_ptr = Union[
    "ctypes._Pointer[ctypes.c_int32]",
    "ctypes._Pointer[ctypes.c_int64]"
]
51
52
53
54
_ctypes_int_array = Union[
    "ctypes.Array[ctypes._Pointer[ctypes.c_int32]]",
    "ctypes.Array[ctypes._Pointer[ctypes.c_int64]]"
]
55
56
57
58
59
60
61
62
_ctypes_float_ptr = Union[
    "ctypes._Pointer[ctypes.c_float]",
    "ctypes._Pointer[ctypes.c_double]"
]
_ctypes_float_array = Union[
    "ctypes.Array[ctypes._Pointer[ctypes.c_float]]",
    "ctypes.Array[ctypes._Pointer[ctypes.c_double]]"
]
63
_LGBM_EvalFunctionResultType = Tuple[str, float, bool]
64
_LGBM_BoosterBestScoreType = Dict[str, Dict[str, float]]
65
_LGBM_BoosterEvalMethodResultType = Tuple[str, str, float, bool]
66
_LGBM_BoosterEvalMethodResultWithStandardDeviationType = Tuple[str, str, float, bool, float]
67
68
_LGBM_CategoricalFeatureConfiguration = Union[List[str], List[int], "Literal['auto']"]
_LGBM_FeatureNameConfiguration = Union[List[str], "Literal['auto']"]
69
70
71
72
73
74
_LGBM_GroupType = Union[
    List[float],
    List[int],
    np.ndarray,
    pd_Series
]
75
76
77
78
_LGBM_PositionType = Union[
    np.ndarray,
    pd_Series
]
79
80
81
82
83
84
85
_LGBM_InitScoreType = Union[
    List[float],
    List[List[float]],
    np.ndarray,
    pd_Series,
    pd_DataFrame,
]
86
87
88
89
90
91
92
93
94
_LGBM_TrainDataType = Union[
    str,
    Path,
    np.ndarray,
    pd_DataFrame,
    dt_DataTable,
    scipy.sparse.spmatrix,
    "Sequence",
    List["Sequence"],
95
96
    List[np.ndarray],
    pa_Table
97
]
98
_LGBM_LabelType = Union[
99
100
    List[float],
    List[int],
101
102
    np.ndarray,
    pd_Series,
103
104
105
    pd_DataFrame,
    pa_Array,
    pa_ChunkedArray,
106
]
107
108
109
110
111
112
113
114
_LGBM_PredictDataType = Union[
    str,
    Path,
    np.ndarray,
    pd_DataFrame,
    dt_DataTable,
    scipy.sparse.spmatrix
]
115
116
117
118
_LGBM_WeightType = Union[
    List[float],
    List[int],
    np.ndarray,
119
120
121
    pd_Series,
    pa_Array,
    pa_ChunkedArray,
122
]
123
124
125
ZERO_THRESHOLD = 1e-35


126
127
128
129
def _is_zero(x: float) -> bool:
    return -ZERO_THRESHOLD <= x <= ZERO_THRESHOLD


130
def _get_sample_count(total_nrow: int, params: str) -> int:
131
132
133
    sample_cnt = ctypes.c_int(0)
    _safe_call(_LIB.LGBM_GetSampleCount(
        ctypes.c_int32(total_nrow),
134
        _c_str(params),
135
136
137
138
        ctypes.byref(sample_cnt),
    ))
    return sample_cnt.value

wxchan's avatar
wxchan committed
139

140
141
142
143
144
145
class _MissingType(Enum):
    NONE = 'None'
    NAN = 'NaN'
    ZERO = 'Zero'


146
class _DummyLogger:
147
    def info(self, msg: str) -> None:
148
        print(msg)  # noqa: T201
149

150
    def warning(self, msg: str) -> None:
151
152
153
        warnings.warn(msg, stacklevel=3)


154
155
156
_LOGGER: Any = _DummyLogger()
_INFO_METHOD_NAME = "info"
_WARNING_METHOD_NAME = "warning"
157
158


159
160
161
162
def _has_method(logger: Any, method_name: str) -> bool:
    return callable(getattr(logger, method_name, None))


163
164
165
def register_logger(
    logger: Any, info_method_name: str = "info", warning_method_name: str = "warning"
) -> None:
166
167
168
169
    """Register custom logger.

    Parameters
    ----------
170
    logger : Any
171
        Custom logger.
172
173
174
175
    info_method_name : str, optional (default="info")
        Method used to log info messages.
    warning_method_name : str, optional (default="warning")
        Method used to log warning messages.
176
    """
177
178
179
180
181
182
    if not _has_method(logger, info_method_name) or not _has_method(logger, warning_method_name):
        raise TypeError(
            f"Logger must provide '{info_method_name}' and '{warning_method_name}' method"
        )

    global _LOGGER, _INFO_METHOD_NAME, _WARNING_METHOD_NAME
183
    _LOGGER = logger
184
185
    _INFO_METHOD_NAME = info_method_name
    _WARNING_METHOD_NAME = warning_method_name
186
187


188
def _normalize_native_string(func: Callable[[str], None]) -> Callable[[str], None]:
189
    """Join log messages from native library which come by chunks."""
190
    msg_normalized: List[str] = []
191
192

    @wraps(func)
193
    def wrapper(msg: str) -> None:
194
195
196
197
198
199
200
201
202
203
204
        nonlocal msg_normalized
        if msg.strip() == '':
            msg = ''.join(msg_normalized)
            msg_normalized = []
            return func(msg)
        else:
            msg_normalized.append(msg)

    return wrapper


205
def _log_info(msg: str) -> None:
206
    getattr(_LOGGER, _INFO_METHOD_NAME)(msg)
207
208


209
def _log_warning(msg: str) -> None:
210
    getattr(_LOGGER, _WARNING_METHOD_NAME)(msg)
211
212
213


@_normalize_native_string
214
def _log_native(msg: str) -> None:
215
    getattr(_LOGGER, _INFO_METHOD_NAME)(msg)
216
217


218
def _log_callback(msg: bytes) -> None:
219
    """Redirect logs from native library into Python."""
220
    _log_native(str(msg.decode('utf-8')))
221
222


223
def _load_lib() -> ctypes.CDLL:
224
    """Load LightGBM library."""
wxchan's avatar
wxchan committed
225
226
227
    lib_path = find_lib_path()
    lib = ctypes.cdll.LoadLibrary(lib_path[0])
    lib.LGBM_GetLastError.restype = ctypes.c_char_p
228
    callback = ctypes.CFUNCTYPE(None, ctypes.c_char_p)
229
    lib.callback = callback(_log_callback)  # type: ignore[attr-defined]
230
    if lib.LGBM_RegisterLogCallback(lib.callback) != 0:
231
        raise LightGBMError(lib.LGBM_GetLastError().decode('utf-8'))
wxchan's avatar
wxchan committed
232
233
    return lib

wxchan's avatar
wxchan committed
234

235
236
237
238
239
240
241
# we don't need lib_lightgbm while building docs
_LIB: ctypes.CDLL
if environ.get('LIGHTGBM_BUILD_DOC', False):
    from unittest.mock import Mock  # isort: skip
    _LIB = Mock(ctypes.CDLL)  # type: ignore
else:
    _LIB = _load_lib()
wxchan's avatar
wxchan committed
242

wxchan's avatar
wxchan committed
243

244
_NUMERIC_TYPES = (int, float, bool)
245
_ArrayLike = Union[List, np.ndarray, pd_Series]
246
247


248
def _safe_call(ret: int) -> None:
249
250
    """Check the return value from C API call.

wxchan's avatar
wxchan committed
251
252
253
    Parameters
    ----------
    ret : int
254
        The return value from C API calls.
wxchan's avatar
wxchan committed
255
256
    """
    if ret != 0:
257
        raise LightGBMError(_LIB.LGBM_GetLastError().decode('utf-8'))
wxchan's avatar
wxchan committed
258

wxchan's avatar
wxchan committed
259

260
def _is_numeric(obj: Any) -> bool:
261
    """Check whether object is a number or not, include numpy number, etc."""
wxchan's avatar
wxchan committed
262
263
264
    try:
        float(obj)
        return True
wxchan's avatar
wxchan committed
265
266
267
    except (TypeError, ValueError):
        # TypeError: obj is not a string or a number
        # ValueError: invalid literal
wxchan's avatar
wxchan committed
268
269
        return False

wxchan's avatar
wxchan committed
270

271
def _is_numpy_1d_array(data: Any) -> bool:
272
    """Check whether data is a numpy 1-D array."""
273
    return isinstance(data, np.ndarray) and len(data.shape) == 1
wxchan's avatar
wxchan committed
274

wxchan's avatar
wxchan committed
275

276
def _is_numpy_column_array(data: Any) -> bool:
277
278
279
280
281
282
283
    """Check whether data is a column numpy array."""
    if not isinstance(data, np.ndarray):
        return False
    shape = data.shape
    return len(shape) == 2 and shape[1] == 1


284
def _cast_numpy_array_to_dtype(array: np.ndarray, dtype: "np.typing.DTypeLike") -> np.ndarray:
285
    """Cast numpy array to given dtype."""
286
287
288
289
290
    if array.dtype == dtype:
        return array
    return array.astype(dtype=dtype, copy=False)


291
def _is_1d_list(data: Any) -> bool:
292
    """Check whether data is a 1-D list."""
293
    return isinstance(data, list) and (not data or _is_numeric(data[0]))
wxchan's avatar
wxchan committed
294

wxchan's avatar
wxchan committed
295

296
297
298
299
300
301
302
303
304
305
306
307
308
309
def _is_list_of_numpy_arrays(data: Any) -> "TypeGuard[List[np.ndarray]]":
    return (
        isinstance(data, list)
        and all(isinstance(x, np.ndarray) for x in data)
    )


def _is_list_of_sequences(data: Any) -> "TypeGuard[List[Sequence]]":
    return (
        isinstance(data, list)
        and all(isinstance(x, Sequence) for x in data)
    )


310
311
312
def _is_1d_collection(data: Any) -> bool:
    """Check whether data is a 1-D collection."""
    return (
313
        _is_numpy_1d_array(data)
314
        or _is_numpy_column_array(data)
315
        or _is_1d_list(data)
316
317
318
319
        or isinstance(data, pd_Series)
    )


320
321
def _list_to_1d_numpy(
    data: Any,
322
323
    dtype: "np.typing.DTypeLike",
    name: str
324
) -> np.ndarray:
325
    """Convert data to numpy 1-D array."""
326
    if _is_numpy_1d_array(data):
327
        return _cast_numpy_array_to_dtype(data, dtype)
328
    elif _is_numpy_column_array(data):
329
330
        _log_warning('Converting column-vector to 1d array')
        array = data.ravel()
331
        return _cast_numpy_array_to_dtype(array, dtype)
332
    elif _is_1d_list(data):
wxchan's avatar
wxchan committed
333
        return np.array(data, dtype=dtype, copy=False)
334
    elif isinstance(data, pd_Series):
335
        _check_for_bad_pandas_dtypes(data.to_frame().dtypes)
336
        return np.array(data, dtype=dtype, copy=False)  # SparseArray should be supported as well
wxchan's avatar
wxchan committed
337
    else:
338
339
        raise TypeError(f"Wrong type({type(data).__name__}) for {name}.\n"
                        "It should be list, numpy 1-D array or pandas Series")
wxchan's avatar
wxchan committed
340

wxchan's avatar
wxchan committed
341

342
343
344
345
346
347
348
def _is_numpy_2d_array(data: Any) -> bool:
    """Check whether data is a numpy 2-D array."""
    return isinstance(data, np.ndarray) and len(data.shape) == 2 and data.shape[1] > 1


def _is_2d_list(data: Any) -> bool:
    """Check whether data is a 2-D list."""
349
    return isinstance(data, list) and len(data) > 0 and _is_1d_list(data[0])
350
351
352
353
354
355
356
357
358
359
360


def _is_2d_collection(data: Any) -> bool:
    """Check whether data is a 2-D collection."""
    return (
        _is_numpy_2d_array(data)
        or _is_2d_list(data)
        or isinstance(data, pd_DataFrame)
    )


361
362
363
364
365
def _is_pyarrow_array(data: Any) -> bool:
    """Check whether data is a PyArrow array."""
    return isinstance(data, (pa_Array, pa_ChunkedArray))


366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
def _is_pyarrow_table(data: Any) -> bool:
    """Check whether data is a PyArrow table."""
    return isinstance(data, pa_Table)


class _ArrowCArray:
    """Simple wrapper around the C representation of an Arrow type."""

    n_chunks: int
    chunks: arrow_cffi.CData
    schema: arrow_cffi.CData

    def __init__(self, n_chunks: int, chunks: arrow_cffi.CData, schema: arrow_cffi.CData):
        self.n_chunks = n_chunks
        self.chunks = chunks
        self.schema = schema

    @property
    def chunks_ptr(self) -> int:
        """Returns the address of the pointer to the list of chunks making up the array."""
        return int(arrow_cffi.cast("uintptr_t", arrow_cffi.addressof(self.chunks[0])))

    @property
    def schema_ptr(self) -> int:
        """Returns the address of the pointer to the schema of the array."""
        return int(arrow_cffi.cast("uintptr_t", self.schema))


def _export_arrow_to_c(data: pa_Table) -> _ArrowCArray:
    """Export an Arrow type to its C representation."""
    # Obtain objects to export
397
398
399
400
401
    if isinstance(data, pa_Array):
        export_objects = [data]
    elif isinstance(data, pa_ChunkedArray):
        export_objects = data.chunks
    elif isinstance(data, pa_Table):
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
        export_objects = data.to_batches()
    else:
        raise ValueError(f"data of type '{type(data)}' cannot be exported to Arrow")

    # Prepare export
    chunks = arrow_cffi.new("struct ArrowArray[]", len(export_objects))
    schema = arrow_cffi.new("struct ArrowSchema*")

    # Export all objects
    for i, obj in enumerate(export_objects):
        chunk_ptr = int(arrow_cffi.cast("uintptr_t", arrow_cffi.addressof(chunks[i])))
        if i == 0:
            schema_ptr = int(arrow_cffi.cast("uintptr_t", schema))
            obj._export_to_c(chunk_ptr, schema_ptr)
        else:
            obj._export_to_c(chunk_ptr)

    return _ArrowCArray(len(chunks), chunks, schema)



423
424
def _data_to_2d_numpy(
    data: Any,
425
426
    dtype: "np.typing.DTypeLike",
    name: str
427
) -> np.ndarray:
428
429
    """Convert data to numpy 2-D array."""
    if _is_numpy_2d_array(data):
430
        return _cast_numpy_array_to_dtype(data, dtype)
431
432
433
    if _is_2d_list(data):
        return np.array(data, dtype=dtype)
    if isinstance(data, pd_DataFrame):
434
        _check_for_bad_pandas_dtypes(data.dtypes)
435
        return _cast_numpy_array_to_dtype(data.values, dtype)
436
437
438
439
    raise TypeError(f"Wrong type({type(data).__name__}) for {name}.\n"
                    "It should be list of lists, numpy 2-D array or pandas DataFrame")


440
def _cfloat32_array_to_numpy(*, cptr: "ctypes._Pointer", length: int) -> np.ndarray:
441
    """Convert a ctypes float pointer array to a numpy array."""
wxchan's avatar
wxchan committed
442
    if isinstance(cptr, ctypes.POINTER(ctypes.c_float)):
443
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
wxchan's avatar
wxchan committed
444
    else:
445
        raise RuntimeError('Expected float pointer')
wxchan's avatar
wxchan committed
446

Guolin Ke's avatar
Guolin Ke committed
447

448
def _cfloat64_array_to_numpy(*, cptr: "ctypes._Pointer", length: int) -> np.ndarray:
449
    """Convert a ctypes double pointer array to a numpy array."""
Guolin Ke's avatar
Guolin Ke committed
450
    if isinstance(cptr, ctypes.POINTER(ctypes.c_double)):
451
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
Guolin Ke's avatar
Guolin Ke committed
452
453
454
    else:
        raise RuntimeError('Expected double pointer')

wxchan's avatar
wxchan committed
455

456
def _cint32_array_to_numpy(*, cptr: "ctypes._Pointer", length: int) -> np.ndarray:
457
    """Convert a ctypes int pointer array to a numpy array."""
wxchan's avatar
wxchan committed
458
    if isinstance(cptr, ctypes.POINTER(ctypes.c_int32)):
459
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
wxchan's avatar
wxchan committed
460
    else:
461
462
463
        raise RuntimeError('Expected int32 pointer')


464
def _cint64_array_to_numpy(*, cptr: "ctypes._Pointer", length: int) -> np.ndarray:
465
466
    """Convert a ctypes int pointer array to a numpy array."""
    if isinstance(cptr, ctypes.POINTER(ctypes.c_int64)):
467
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
468
469
    else:
        raise RuntimeError('Expected int64 pointer')
wxchan's avatar
wxchan committed
470

wxchan's avatar
wxchan committed
471

472
def _c_str(string: str) -> ctypes.c_char_p:
473
    """Convert a Python string to C string."""
wxchan's avatar
wxchan committed
474
475
    return ctypes.c_char_p(string.encode('utf-8'))

wxchan's avatar
wxchan committed
476

477
def _c_array(ctype: type, values: List[Any]) -> ctypes.Array:
478
    """Convert a Python array to C array."""
479
    return (ctype * len(values))(*values)  # type: ignore[operator]
wxchan's avatar
wxchan committed
480

wxchan's avatar
wxchan committed
481

482
def _json_default_with_numpy(obj: Any) -> Any:
483
484
485
486
487
488
489
490
491
    """Convert numpy classes to JSON serializable objects."""
    if isinstance(obj, (np.integer, np.floating, np.bool_)):
        return obj.item()
    elif isinstance(obj, np.ndarray):
        return obj.tolist()
    else:
        return obj


492
493
494
495
496
497
498
499
def _to_string(x: Union[int, float, str, List]) -> str:
    if isinstance(x, list):
        val_list = ",".join(str(val) for val in x)
        return f"[{val_list}]"
    else:
        return str(x)


500
def _param_dict_to_str(data: Optional[Dict[str, Any]]) -> str:
501
    """Convert Python dictionary to string, which is passed to C API."""
502
    if data is None or not data:
wxchan's avatar
wxchan committed
503
504
505
        return ""
    pairs = []
    for key, val in data.items():
506
        if isinstance(val, (list, tuple, set)) or _is_numpy_1d_array(val):
507
            pairs.append(f"{key}={','.join(map(_to_string, val))}")
508
        elif isinstance(val, (str, Path, _NUMERIC_TYPES)) or _is_numeric(val):
509
            pairs.append(f"{key}={val}")
510
        elif val is not None:
511
            raise TypeError(f'Unknown type of parameter:{key}, got:{type(val).__name__}')
wxchan's avatar
wxchan committed
512
    return ' '.join(pairs)
513

wxchan's avatar
wxchan committed
514

515
class _TempFile:
516
517
    """Proxy class to workaround errors on Windows."""

518
519
520
    def __enter__(self):
        with NamedTemporaryFile(prefix="lightgbm_tmp_", delete=True) as f:
            self.name = f.name
521
            self.path = Path(self.name)
522
        return self
wxchan's avatar
wxchan committed
523

524
    def __exit__(self, exc_type, exc_val, exc_tb):
525
526
        if self.path.is_file():
            self.path.unlink()
527

wxchan's avatar
wxchan committed
528

529
class LightGBMError(Exception):
530
531
    """Error thrown by LightGBM."""

532
533
534
    pass


535
536
537
538
539
540
541
542
# DeprecationWarning is not shown by default, so let's create our own with higher level
class LGBMDeprecationWarning(UserWarning):
    """Custom deprecation warning."""

    pass


class _ConfigAliases:
543
544
545
546
    # lazy evaluation to allow import without dynamic library, e.g., for docs generation
    aliases = None

    @staticmethod
547
    def _get_all_param_aliases() -> Dict[str, List[str]]:
548
549
550
        buffer_len = 1 << 20
        tmp_out_len = ctypes.c_int64(0)
        string_buffer = ctypes.create_string_buffer(buffer_len)
551
        ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
552
553
554
555
556
557
558
559
        _safe_call(_LIB.LGBM_DumpParamAliases(
            ctypes.c_int64(buffer_len),
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
        # if buffer length is not long enough, re-allocate a buffer
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
560
            ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
561
562
563
564
            _safe_call(_LIB.LGBM_DumpParamAliases(
                ctypes.c_int64(actual_len),
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
565
        return json.loads(
566
            string_buffer.value.decode('utf-8'),
567
            object_hook=lambda obj: {k: [k] + v for k, v in obj.items()}
568
        )
569
570

    @classmethod
571
572
573
    def get(cls, *args) -> Set[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
574
575
        ret = set()
        for i in args:
576
            ret.update(cls.get_sorted(i))
577
578
        return ret

579
580
581
582
583
584
    @classmethod
    def get_sorted(cls, name: str) -> List[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
        return cls.aliases.get(name, [name])

585
    @classmethod
586
587
588
    def get_by_alias(cls, *args) -> Set[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
589
590
591
592
        ret = set(args)
        for arg in args:
            for aliases in cls.aliases.values():
                if arg in aliases:
593
                    ret.update(aliases)
594
595
596
                    break
        return ret

597

598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
def _choose_param_value(main_param_name: str, params: Dict[str, Any], default_value: Any) -> Dict[str, Any]:
    """Get a single parameter value, accounting for aliases.

    Parameters
    ----------
    main_param_name : str
        Name of the main parameter to get a value for. One of the keys of ``_ConfigAliases``.
    params : dict
        Dictionary of LightGBM parameters.
    default_value : Any
        Default value to use for the parameter, if none is found in ``params``.

    Returns
    -------
    params : dict
        A ``params`` dict with exactly one value for ``main_param_name``, and all aliases ``main_param_name`` removed.
        If both ``main_param_name`` and one or more aliases for it are found, the value of ``main_param_name`` will be preferred.
    """
    # avoid side effects on passed-in parameters
    params = deepcopy(params)

619
620
    aliases = _ConfigAliases.get_sorted(main_param_name)
    aliases = [a for a in aliases if a != main_param_name]
621
622

    # if main_param_name was provided, keep that value and remove all aliases
623
    if main_param_name in params.keys():
624
625
626
        for param in aliases:
            params.pop(param, None)
        return params
627

628
629
630
631
632
    # if main param name was not found, search for an alias
    for param in aliases:
        if param in params.keys():
            params[main_param_name] = params[param]
            break
633

634
635
636
637
638
639
640
    if main_param_name in params.keys():
        for param in aliases:
            params.pop(param, None)
        return params

    # neither of main_param_name, aliases were found
    params[main_param_name] = default_value
641
642
643
644

    return params


645
_MAX_INT32 = (1 << 31) - 1
646

647
"""Macro definition of data type in C API of LightGBM"""
648
649
650
651
_C_API_DTYPE_FLOAT32 = 0
_C_API_DTYPE_FLOAT64 = 1
_C_API_DTYPE_INT32 = 2
_C_API_DTYPE_INT64 = 3
Guolin Ke's avatar
Guolin Ke committed
652

653
"""Matrix is row major in Python"""
654
_C_API_IS_ROW_MAJOR = 1
wxchan's avatar
wxchan committed
655

656
"""Macro definition of prediction type in C API of LightGBM"""
657
658
659
660
_C_API_PREDICT_NORMAL = 0
_C_API_PREDICT_RAW_SCORE = 1
_C_API_PREDICT_LEAF_INDEX = 2
_C_API_PREDICT_CONTRIB = 3
wxchan's avatar
wxchan committed
661

662
"""Macro definition of sparse matrix type"""
663
664
_C_API_MATRIX_TYPE_CSR = 0
_C_API_MATRIX_TYPE_CSC = 1
665

666
"""Macro definition of feature importance type"""
667
668
_C_API_FEATURE_IMPORTANCE_SPLIT = 0
_C_API_FEATURE_IMPORTANCE_GAIN = 1
669

670
"""Data type of data field"""
671
672
673
674
_FIELD_TYPE_MAPPER = {
    "label": _C_API_DTYPE_FLOAT32,
    "weight": _C_API_DTYPE_FLOAT32,
    "init_score": _C_API_DTYPE_FLOAT64,
675
676
    "group": _C_API_DTYPE_INT32,
    "position": _C_API_DTYPE_INT32
677
}
wxchan's avatar
wxchan committed
678

679
"""String name to int feature importance type mapper"""
680
681
682
683
_FEATURE_IMPORTANCE_TYPE_MAPPER = {
    "split": _C_API_FEATURE_IMPORTANCE_SPLIT,
    "gain": _C_API_FEATURE_IMPORTANCE_GAIN
}
684

wxchan's avatar
wxchan committed
685

686
def _convert_from_sliced_object(data: np.ndarray) -> np.ndarray:
687
    """Fix the memory of multi-dimensional sliced object."""
688
    if isinstance(data, np.ndarray) and isinstance(data.base, np.ndarray):
689
        if not data.flags.c_contiguous:
690
691
            _log_warning("Usage of np.ndarray subset (sliced data) is not recommended "
                         "due to it will double the peak memory cost in LightGBM.")
692
693
694
695
            return np.copy(data)
    return data


696
697
698
def _c_float_array(
    data: np.ndarray
) -> Tuple[_ctypes_float_ptr, int, np.ndarray]:
699
    """Get pointer of float numpy array / list."""
700
    if _is_1d_list(data):
wxchan's avatar
wxchan committed
701
        data = np.array(data, copy=False)
702
    if _is_numpy_1d_array(data):
703
        data = _convert_from_sliced_object(data)
704
        assert data.flags.c_contiguous
705
        ptr_data: _ctypes_float_ptr
wxchan's avatar
wxchan committed
706
707
        if data.dtype == np.float32:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_float))
708
            type_data = _C_API_DTYPE_FLOAT32
wxchan's avatar
wxchan committed
709
710
        elif data.dtype == np.float64:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_double))
711
            type_data = _C_API_DTYPE_FLOAT64
wxchan's avatar
wxchan committed
712
        else:
713
            raise TypeError(f"Expected np.float32 or np.float64, met type({data.dtype})")
wxchan's avatar
wxchan committed
714
    else:
715
        raise TypeError(f"Unknown type({type(data).__name__})")
716
    return (ptr_data, type_data, data)  # return `data` to avoid the temporary copy is freed
wxchan's avatar
wxchan committed
717

wxchan's avatar
wxchan committed
718

719
720
721
def _c_int_array(
    data: np.ndarray
) -> Tuple[_ctypes_int_ptr, int, np.ndarray]:
722
    """Get pointer of int numpy array / list."""
723
    if _is_1d_list(data):
wxchan's avatar
wxchan committed
724
        data = np.array(data, copy=False)
725
    if _is_numpy_1d_array(data):
726
        data = _convert_from_sliced_object(data)
727
        assert data.flags.c_contiguous
728
        ptr_data: _ctypes_int_ptr
wxchan's avatar
wxchan committed
729
730
        if data.dtype == np.int32:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_int32))
731
            type_data = _C_API_DTYPE_INT32
wxchan's avatar
wxchan committed
732
733
        elif data.dtype == np.int64:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_int64))
734
            type_data = _C_API_DTYPE_INT64
wxchan's avatar
wxchan committed
735
        else:
736
            raise TypeError(f"Expected np.int32 or np.int64, met type({data.dtype})")
wxchan's avatar
wxchan committed
737
    else:
738
        raise TypeError(f"Unknown type({type(data).__name__})")
739
    return (ptr_data, type_data, data)  # return `data` to avoid the temporary copy is freed
wxchan's avatar
wxchan committed
740

wxchan's avatar
wxchan committed
741

742
def _is_allowed_numpy_dtype(dtype: type) -> bool:
743
    float128 = getattr(np, 'float128', type(None))
744
745
746
747
    return (
        issubclass(dtype, (np.integer, np.floating, np.bool_))
        and not issubclass(dtype, (np.timedelta64, float128))
    )
748
749


750
def _check_for_bad_pandas_dtypes(pandas_dtypes_series: pd_Series) -> None:
751
752
    bad_pandas_dtypes = [
        f'{column_name}: {pandas_dtype}'
753
        for column_name, pandas_dtype in pandas_dtypes_series.items()
754
        if not _is_allowed_numpy_dtype(pandas_dtype.type)
755
756
757
758
    ]
    if bad_pandas_dtypes:
        raise ValueError('pandas dtypes must be int, float or bool.\n'
                         f'Fields with bad pandas dtypes: {", ".join(bad_pandas_dtypes)}')
759
760


761
def _data_from_pandas(
762
763
764
    data: pd_DataFrame,
    feature_name: _LGBM_FeatureNameConfiguration,
    categorical_feature: _LGBM_CategoricalFeatureConfiguration,
765
    pandas_categorical: Optional[List[List]]
766
767
768
769
770
771
772
773
774
775
776
777
778
) -> Tuple[np.ndarray, List[str], List[str], List[List]]:
    if len(data.shape) != 2 or data.shape[0] < 1:
        raise ValueError('Input data must be 2 dimensional and non empty.')

    # determine feature names
    if feature_name == 'auto':
        feature_name = [str(col) for col in data.columns]

    # determine categorical features
    cat_cols = [col for col, dtype in zip(data.columns, data.dtypes) if isinstance(dtype, pd_CategoricalDtype)]
    cat_cols_not_ordered = [col for col in cat_cols if not data[col].cat.ordered]
    if pandas_categorical is None:  # train dataset
        pandas_categorical = [list(data[col].cat.categories) for col in cat_cols]
779
    else:
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
        if len(cat_cols) != len(pandas_categorical):
            raise ValueError('train and valid dataset categorical_feature do not match.')
        for col, category in zip(cat_cols, pandas_categorical):
            if list(data[col].cat.categories) != list(category):
                data[col] = data[col].cat.set_categories(category)
    if len(cat_cols):  # cat_cols is list
        data = data.copy(deep=False)  # not alter origin DataFrame
        data[cat_cols] = data[cat_cols].apply(lambda x: x.cat.codes).replace({-1: np.nan})
    if categorical_feature == 'auto':  # use cat cols from DataFrame
        categorical_feature = cat_cols_not_ordered
    else:  # use cat cols specified by user
        categorical_feature = list(categorical_feature)  # type: ignore[assignment]

    # get numpy representation of the data
    _check_for_bad_pandas_dtypes(data.dtypes)
    df_dtypes = [dtype.type for dtype in data.dtypes]
    df_dtypes.append(np.float32)  # so that the target dtype considers floats
    target_dtype = np.result_type(*df_dtypes)
    try:
        # most common case (no nullable dtypes)
        data = data.to_numpy(dtype=target_dtype, copy=False)
    except TypeError:
        # 1.0 <= pd version < 1.1 and nullable dtypes, least common case
        # raises error because array is casted to type(pd.NA) and there's no na_value argument
        data = data.astype(target_dtype, copy=False).values
    except ValueError:
        # data has nullable dtypes, but we can specify na_value argument and copy will be made
        data = data.to_numpy(dtype=target_dtype, na_value=np.nan)
808
    return data, feature_name, categorical_feature, pandas_categorical
809
810


811
812
813
814
def _dump_pandas_categorical(
    pandas_categorical: Optional[List[List]],
    file_name: Optional[Union[str, Path]] = None
) -> str:
815
    categorical_json = json.dumps(pandas_categorical, default=_json_default_with_numpy)
816
    pandas_str = f'\npandas_categorical:{categorical_json}\n'
817
818
819
820
821
822
    if file_name is not None:
        with open(file_name, 'a') as f:
            f.write(pandas_str)
    return pandas_str


823
824
825
def _load_pandas_categorical(
    file_name: Optional[Union[str, Path]] = None,
    model_str: Optional[str] = None
826
) -> Optional[List[List]]:
827
828
    pandas_key = 'pandas_categorical:'
    offset = -len(pandas_key)
829
    if file_name is not None:
830
        max_offset = -getsize(file_name)
831
832
833
834
        with open(file_name, 'rb') as f:
            while True:
                if offset < max_offset:
                    offset = max_offset
835
                f.seek(offset, SEEK_END)
836
837
838
839
                lines = f.readlines()
                if len(lines) >= 2:
                    break
                offset *= 2
840
        last_line = lines[-1].decode('utf-8').strip()
841
        if not last_line.startswith(pandas_key):
842
            last_line = lines[-2].decode('utf-8').strip()
843
    elif model_str is not None:
844
845
846
847
848
849
        idx = model_str.rfind('\n', 0, offset)
        last_line = model_str[idx:].strip()
    if last_line.startswith(pandas_key):
        return json.loads(last_line[len(pandas_key):])
    else:
        return None
850
851


852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
class Sequence(abc.ABC):
    """
    Generic data access interface.

    Object should support the following operations:

    .. code-block::

        # Get total row number.
        >>> len(seq)
        # Random access by row index. Used for data sampling.
        >>> seq[10]
        # Range data access. Used to read data in batch when constructing Dataset.
        >>> seq[0:100]
        # Optionally specify batch_size to control range data read size.
        >>> seq.batch_size

    - With random access, **data sampling does not need to go through all data**.
    - With range data access, there's **no need to read all data into memory thus reduce memory usage**.

872
873
    .. versionadded:: 3.3.0

874
875
876
877
878
879
880
881
882
    Attributes
    ----------
    batch_size : int
        Default size of a batch.
    """

    batch_size = 4096  # Defaults to read 4K rows in each batch.

    @abc.abstractmethod
883
    def __getitem__(self, idx: Union[int, slice, List[int]]) -> np.ndarray:
884
885
886
887
888
889
890
        """Return data for given row index.

        A basic implementation should look like this:

        .. code-block:: python

            if isinstance(idx, numbers.Integral):
891
                return self._get_one_line(idx)
892
            elif isinstance(idx, slice):
893
894
                return np.stack([self._get_one_line(i) for i in range(idx.start, idx.stop)])
            elif isinstance(idx, list):
895
                # Only required if using ``Dataset.subset()``.
896
                return np.array([self._get_one_line(i) for i in idx])
897
            else:
898
                raise TypeError(f"Sequence index must be integer, slice or list, got {type(idx).__name__}")
899
900
901

        Parameters
        ----------
902
        idx : int, slice[int], list[int]
903
904
905
906
            Item index.

        Returns
        -------
907
        result : numpy 1-D array or numpy 2-D array
908
            1-D array if idx is int, 2-D array if idx is slice or list.
909
910
911
912
913
914
915
916
917
        """
        raise NotImplementedError("Sub-classes of lightgbm.Sequence must implement __getitem__()")

    @abc.abstractmethod
    def __len__(self) -> int:
        """Return row count of this sequence."""
        raise NotImplementedError("Sub-classes of lightgbm.Sequence must implement __len__()")


918
class _InnerPredictor:
919
920
921
922
923
    """_InnerPredictor of LightGBM.

    Not exposed to user.
    Used only for prediction, usually used for continued training.

Nikita Titov's avatar
Nikita Titov committed
924
925
926
    .. note::

        Can be converted from Booster, but cannot be converted to Booster.
Guolin Ke's avatar
Guolin Ke committed
927
    """
928

929
930
    def __init__(
        self,
931
932
933
934
        booster_handle: _BoosterHandle,
        pandas_categorical: Optional[List[List]],
        pred_parameter: Dict[str, Any],
        manage_handle: bool
935
    ):
936
        """Initialize the _InnerPredictor.
wxchan's avatar
wxchan committed
937
938
939

        Parameters
        ----------
940
        booster_handle : object
941
            Handle of Booster.
942
943
944
945
        pandas_categorical : list of list, or None
            If provided, list of categories for ``pandas`` categorical columns.
            Where the ``i``th element of the list contains the categories for the ``i``th categorical feature.
        pred_parameter : dict
946
            Other parameters for the prediction.
947
948
        manage_handle : bool
            If ``True``, free the corresponding Booster on the C++ side when this Python object is deleted.
wxchan's avatar
wxchan committed
949
        """
950
951
952
953
954
955
956
957
        self._handle = booster_handle
        self.__is_manage_handle = manage_handle
        self.pandas_categorical = pandas_categorical
        self.pred_parameter = _param_dict_to_str(pred_parameter)

        out_num_class = ctypes.c_int(0)
        _safe_call(
            _LIB.LGBM_BoosterGetNumClasses(
958
                self._handle,
959
960
961
962
                ctypes.byref(out_num_class)
            )
        )
        self.num_class = out_num_class.value
wxchan's avatar
wxchan committed
963

964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
    @classmethod
    def from_booster(
        cls,
        booster: "Booster",
        pred_parameter: Dict[str, Any]
    ) -> "_InnerPredictor":
        """Initialize an ``_InnerPredictor`` from a ``Booster``.

        Parameters
        ----------
        booster : Booster
            Booster.
        pred_parameter : dict
            Other parameters for the prediction.
        """
        out_cur_iter = ctypes.c_int(0)
        _safe_call(
            _LIB.LGBM_BoosterGetCurrentIteration(
                booster._handle,
                ctypes.byref(out_cur_iter)
            )
        )
        return cls(
            booster_handle=booster._handle,
            pandas_categorical=booster.pandas_categorical,
            pred_parameter=pred_parameter,
            manage_handle=False
        )

    @classmethod
    def from_model_file(
        cls,
        model_file: Union[str, Path],
        pred_parameter: Dict[str, Any]
    ) -> "_InnerPredictor":
        """Initialize an ``_InnerPredictor`` from a text file containing a LightGBM model.

        Parameters
        ----------
        model_file : str or pathlib.Path
            Path to the model file.
        pred_parameter : dict
            Other parameters for the prediction.
        """
        booster_handle = ctypes.c_void_p()
        out_num_iterations = ctypes.c_int(0)
        _safe_call(
            _LIB.LGBM_BoosterCreateFromModelfile(
                _c_str(str(model_file)),
                ctypes.byref(out_num_iterations),
                ctypes.byref(booster_handle)
            )
        )
        return cls(
            booster_handle=booster_handle,
            pandas_categorical=_load_pandas_categorical(file_name=model_file),
            pred_parameter=pred_parameter,
            manage_handle=True
        )
cbecker's avatar
cbecker committed
1023

1024
    def __del__(self) -> None:
1025
1026
        try:
            if self.__is_manage_handle:
1027
                _safe_call(_LIB.LGBM_BoosterFree(self._handle))
1028
1029
        except AttributeError:
            pass
wxchan's avatar
wxchan committed
1030

1031
    def __getstate__(self) -> Dict[str, Any]:
1032
1033
        this = self.__dict__.copy()
        this.pop('handle', None)
1034
        this.pop('_handle', None)
1035
1036
        return this

1037
1038
    def predict(
        self,
1039
        data: _LGBM_PredictDataType,
1040
1041
1042
1043
1044
1045
1046
        start_iteration: int = 0,
        num_iteration: int = -1,
        raw_score: bool = False,
        pred_leaf: bool = False,
        pred_contrib: bool = False,
        data_has_header: bool = False,
        validate_features: bool = False
1047
    ) -> Union[np.ndarray, scipy.sparse.spmatrix, List[scipy.sparse.spmatrix]]:
1048
        """Predict logic.
wxchan's avatar
wxchan committed
1049
1050
1051

        Parameters
        ----------
1052
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
1053
            Data source for prediction.
1054
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
1055
1056
        start_iteration : int, optional (default=0)
            Start index of the iteration to predict.
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
        num_iteration : int, optional (default=-1)
            Iteration used for prediction.
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        pred_leaf : bool, optional (default=False)
            Whether to predict leaf index.
        pred_contrib : bool, optional (default=False)
            Whether to predict feature contributions.
        data_has_header : bool, optional (default=False)
            Whether data has header.
            Used only for txt data.
1068
1069
1070
        validate_features : bool, optional (default=False)
            If True, ensure that the features used to predict match the ones used to train.
            Used only if data is pandas DataFrame.
wxchan's avatar
wxchan committed
1071

1072
1073
            .. versionadded:: 4.0.0

wxchan's avatar
wxchan committed
1074
1075
        Returns
        -------
1076
        result : numpy array, scipy.sparse or list of scipy.sparse
1077
            Prediction result.
1078
            Can be sparse or a list of sparse objects (each element represents predictions for one class) for feature contributions (when ``pred_contrib=True``).
wxchan's avatar
wxchan committed
1079
        """
wxchan's avatar
wxchan committed
1080
        if isinstance(data, Dataset):
1081
            raise TypeError("Cannot use Dataset instance for prediction, please use raw data instead")
1082
1083
1084
1085
1086
1087
        elif isinstance(data, pd_DataFrame) and validate_features:
            data_names = [str(x) for x in data.columns]
            ptr_names = (ctypes.c_char_p * len(data_names))()
            ptr_names[:] = [x.encode('utf-8') for x in data_names]
            _safe_call(
                _LIB.LGBM_BoosterValidateFeatureNames(
1088
                    self._handle,
1089
1090
1091
1092
                    ptr_names,
                    ctypes.c_int(len(data_names)),
                )
            )
1093
1094
1095
1096
1097
1098
1099
1100
1101

        if isinstance(data, pd_DataFrame):
            data = _data_from_pandas(
                data=data,
                feature_name="auto",
                categorical_feature="auto",
                pandas_categorical=self.pandas_categorical
            )[0]

1102
        predict_type = _C_API_PREDICT_NORMAL
wxchan's avatar
wxchan committed
1103
        if raw_score:
1104
            predict_type = _C_API_PREDICT_RAW_SCORE
wxchan's avatar
wxchan committed
1105
        if pred_leaf:
1106
            predict_type = _C_API_PREDICT_LEAF_INDEX
1107
        if pred_contrib:
1108
            predict_type = _C_API_PREDICT_CONTRIB
cbecker's avatar
cbecker committed
1109

1110
        if isinstance(data, (str, Path)):
1111
            with _TempFile() as f:
wxchan's avatar
wxchan committed
1112
                _safe_call(_LIB.LGBM_BoosterPredictForFile(
1113
                    self._handle,
1114
                    _c_str(str(data)),
1115
                    ctypes.c_int(data_has_header),
Guolin Ke's avatar
Guolin Ke committed
1116
                    ctypes.c_int(predict_type),
1117
                    ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
1118
                    ctypes.c_int(num_iteration),
1119
1120
                    _c_str(self.pred_parameter),
                    _c_str(f.name)))
1121
1122
                preds = np.loadtxt(f.name, dtype=np.float64)
                nrow = preds.shape[0]
wxchan's avatar
wxchan committed
1123
        elif isinstance(data, scipy.sparse.csr_matrix):
1124
1125
1126
1127
1128
1129
            preds, nrow = self.__pred_for_csr(
                csr=data,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
Guolin Ke's avatar
Guolin Ke committed
1130
        elif isinstance(data, scipy.sparse.csc_matrix):
1131
1132
1133
1134
1135
1136
            preds, nrow = self.__pred_for_csc(
                csc=data,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
wxchan's avatar
wxchan committed
1137
        elif isinstance(data, np.ndarray):
1138
1139
1140
1141
1142
1143
            preds, nrow = self.__pred_for_np2d(
                mat=data,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
1144
1145
1146
        elif isinstance(data, list):
            try:
                data = np.array(data)
1147
1148
            except BaseException as err:
                raise ValueError('Cannot convert data list to numpy array.') from err
1149
1150
1151
1152
1153
1154
            preds, nrow = self.__pred_for_np2d(
                mat=data,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
1155
        elif isinstance(data, dt_DataTable):
1156
1157
1158
1159
1160
1161
            preds, nrow = self.__pred_for_np2d(
                mat=data.to_numpy(),
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
wxchan's avatar
wxchan committed
1162
1163
        else:
            try:
1164
                _log_warning('Converting data to scipy sparse matrix.')
wxchan's avatar
wxchan committed
1165
                csr = scipy.sparse.csr_matrix(data)
1166
1167
            except BaseException as err:
                raise TypeError(f'Cannot predict data for type {type(data).__name__}') from err
1168
1169
1170
1171
1172
1173
            preds, nrow = self.__pred_for_csr(
                csr=csr,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
wxchan's avatar
wxchan committed
1174
1175
        if pred_leaf:
            preds = preds.astype(np.int32)
1176
        is_sparse = isinstance(preds, scipy.sparse.spmatrix) or isinstance(preds, list)
1177
        if not is_sparse and preds.size != nrow:
wxchan's avatar
wxchan committed
1178
            if preds.size % nrow == 0:
1179
                preds = preds.reshape(nrow, -1)
wxchan's avatar
wxchan committed
1180
            else:
1181
                raise ValueError(f'Length of predict result ({preds.size}) cannot be divide nrow ({nrow})')
wxchan's avatar
wxchan committed
1182
1183
        return preds

1184
1185
1186
1187
1188
1189
1190
    def __get_num_preds(
        self,
        start_iteration: int,
        num_iteration: int,
        nrow: int,
        predict_type: int
    ) -> int:
1191
        """Get size of prediction result."""
1192
        if nrow > _MAX_INT32:
1193
            raise LightGBMError('LightGBM cannot perform prediction for data '
1194
                                f'with number of rows greater than MAX_INT32 ({_MAX_INT32}).\n'
1195
                                'You can split your data into chunks '
1196
                                'and then concatenate predictions for them')
Guolin Ke's avatar
Guolin Ke committed
1197
1198
        n_preds = ctypes.c_int64(0)
        _safe_call(_LIB.LGBM_BoosterCalcNumPredict(
1199
            self._handle,
Guolin Ke's avatar
Guolin Ke committed
1200
1201
            ctypes.c_int(nrow),
            ctypes.c_int(predict_type),
1202
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
1203
            ctypes.c_int(num_iteration),
Guolin Ke's avatar
Guolin Ke committed
1204
1205
            ctypes.byref(n_preds)))
        return n_preds.value
wxchan's avatar
wxchan committed
1206

1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
    def __inner_predict_np2d(
        self,
        mat: np.ndarray,
        start_iteration: int,
        num_iteration: int,
        predict_type: int,
        preds: Optional[np.ndarray]
    ) -> Tuple[np.ndarray, int]:
        if mat.dtype == np.float32 or mat.dtype == np.float64:
            data = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
        else:  # change non-float data to float data, need to copy
            data = np.array(mat.reshape(mat.size), dtype=np.float32)
        ptr_data, type_ptr_data, _ = _c_float_array(data)
1220
1221
1222
1223
1224
1225
        n_preds = self.__get_num_preds(
            start_iteration=start_iteration,
            num_iteration=num_iteration,
            nrow=mat.shape[0],
            predict_type=predict_type
        )
1226
1227
1228
1229
1230
1231
        if preds is None:
            preds = np.empty(n_preds, dtype=np.float64)
        elif len(preds.shape) != 1 or len(preds) != n_preds:
            raise ValueError("Wrong length of pre-allocated predict array")
        out_num_preds = ctypes.c_int64(0)
        _safe_call(_LIB.LGBM_BoosterPredictForMat(
1232
            self._handle,
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
            ptr_data,
            ctypes.c_int(type_ptr_data),
            ctypes.c_int32(mat.shape[0]),
            ctypes.c_int32(mat.shape[1]),
            ctypes.c_int(_C_API_IS_ROW_MAJOR),
            ctypes.c_int(predict_type),
            ctypes.c_int(start_iteration),
            ctypes.c_int(num_iteration),
            _c_str(self.pred_parameter),
            ctypes.byref(out_num_preds),
            preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
        if n_preds != out_num_preds.value:
            raise ValueError("Wrong length for predict results")
        return preds, mat.shape[0]

    def __pred_for_np2d(
        self,
        mat: np.ndarray,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
    ) -> Tuple[np.ndarray, int]:
1255
        """Predict for a 2-D numpy matrix."""
wxchan's avatar
wxchan committed
1256
        if len(mat.shape) != 2:
1257
            raise ValueError('Input numpy.ndarray or list must be 2 dimensional')
wxchan's avatar
wxchan committed
1258

1259
        nrow = mat.shape[0]
1260
1261
        if nrow > _MAX_INT32:
            sections = np.arange(start=_MAX_INT32, stop=nrow, step=_MAX_INT32)
1262
            # __get_num_preds() cannot work with nrow > MAX_INT32, so calculate overall number of predictions piecemeal
1263
            n_preds = [self.__get_num_preds(start_iteration, num_iteration, i, predict_type) for i in np.diff([0] + list(sections) + [nrow])]
1264
            n_preds_sections = np.array([0] + n_preds, dtype=np.intp).cumsum()
1265
            preds = np.empty(sum(n_preds), dtype=np.float64)
1266
1267
            for chunk, (start_idx_pred, end_idx_pred) in zip(np.array_split(mat, sections),
                                                             zip(n_preds_sections, n_preds_sections[1:])):
1268
                # avoid memory consumption by arrays concatenation operations
1269
1270
1271
1272
1273
1274
1275
                self.__inner_predict_np2d(
                    mat=chunk,
                    start_iteration=start_iteration,
                    num_iteration=num_iteration,
                    predict_type=predict_type,
                    preds=preds[start_idx_pred:end_idx_pred]
                )
1276
            return preds, nrow
wxchan's avatar
wxchan committed
1277
        else:
1278
1279
1280
1281
1282
1283
1284
            return self.__inner_predict_np2d(
                mat=mat,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type,
                preds=None
            )
wxchan's avatar
wxchan committed
1285

1286
1287
1288
    def __create_sparse_native(
        self,
        cs: Union[scipy.sparse.csc_matrix, scipy.sparse.csr_matrix],
1289
1290
1291
1292
1293
1294
        out_shape: np.ndarray,
        out_ptr_indptr: "ctypes._Pointer",
        out_ptr_indices: "ctypes._Pointer",
        out_ptr_data: "ctypes._Pointer",
        indptr_type: int,
        data_type: int,
1295
        is_csr: bool
1296
    ) -> Union[List[scipy.sparse.csc_matrix], List[scipy.sparse.csr_matrix]]:
1297
1298
1299
        # create numpy array from output arrays
        data_indices_len = out_shape[0]
        indptr_len = out_shape[1]
1300
        if indptr_type == _C_API_DTYPE_INT32:
1301
            out_indptr = _cint32_array_to_numpy(cptr=out_ptr_indptr, length=indptr_len)
1302
        elif indptr_type == _C_API_DTYPE_INT64:
1303
            out_indptr = _cint64_array_to_numpy(cptr=out_ptr_indptr, length=indptr_len)
1304
1305
        else:
            raise TypeError("Expected int32 or int64 type for indptr")
1306
        if data_type == _C_API_DTYPE_FLOAT32:
1307
            out_data = _cfloat32_array_to_numpy(cptr=out_ptr_data, length=data_indices_len)
1308
        elif data_type == _C_API_DTYPE_FLOAT64:
1309
            out_data = _cfloat64_array_to_numpy(cptr=out_ptr_data, length=data_indices_len)
1310
1311
        else:
            raise TypeError("Expected float32 or float64 type for data")
1312
        out_indices = _cint32_array_to_numpy(cptr=out_ptr_indices, length=data_indices_len)
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
        # break up indptr based on number of rows (note more than one matrix in multiclass case)
        per_class_indptr_shape = cs.indptr.shape[0]
        # for CSC there is extra column added
        if not is_csr:
            per_class_indptr_shape += 1
        out_indptr_arrays = np.split(out_indptr, out_indptr.shape[0] / per_class_indptr_shape)
        # reformat output into a csr or csc matrix or list of csr or csc matrices
        cs_output_matrices = []
        offset = 0
        for cs_indptr in out_indptr_arrays:
            matrix_indptr_len = cs_indptr[cs_indptr.shape[0] - 1]
            cs_indices = out_indices[offset + cs_indptr[0]:offset + matrix_indptr_len]
            cs_data = out_data[offset + cs_indptr[0]:offset + matrix_indptr_len]
            offset += matrix_indptr_len
            # same shape as input csr or csc matrix except extra column for expected value
            cs_shape = [cs.shape[0], cs.shape[1] + 1]
            # note: make sure we copy data as it will be deallocated next
            if is_csr:
                cs_output_matrices.append(scipy.sparse.csr_matrix((cs_data, cs_indices, cs_indptr), cs_shape))
            else:
                cs_output_matrices.append(scipy.sparse.csc_matrix((cs_data, cs_indices, cs_indptr), cs_shape))
        # free the temporary native indptr, indices, and data
        _safe_call(_LIB.LGBM_BoosterFreePredictSparse(out_ptr_indptr, out_ptr_indices, out_ptr_data,
                                                      ctypes.c_int(indptr_type), ctypes.c_int(data_type)))
        if len(cs_output_matrices) == 1:
            return cs_output_matrices[0]
        return cs_output_matrices

1341
1342
1343
1344
1345
1346
1347
1348
1349
    def __inner_predict_csr(
        self,
        csr: scipy.sparse.csr_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int,
        preds: Optional[np.ndarray]
    ) -> Tuple[np.ndarray, int]:
        nrow = len(csr.indptr) - 1
1350
1351
1352
1353
1354
1355
        n_preds = self.__get_num_preds(
            start_iteration=start_iteration,
            num_iteration=num_iteration,
            nrow=nrow,
            predict_type=predict_type
        )
1356
1357
1358
1359
1360
        if preds is None:
            preds = np.empty(n_preds, dtype=np.float64)
        elif len(preds.shape) != 1 or len(preds) != n_preds:
            raise ValueError("Wrong length of pre-allocated predict array")
        out_num_preds = ctypes.c_int64(0)
wxchan's avatar
wxchan committed
1361

1362
1363
        ptr_indptr, type_ptr_indptr, _ = _c_int_array(csr.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csr.data)
1364

1365
1366
1367
1368
        assert csr.shape[1] <= _MAX_INT32
        csr_indices = csr.indices.astype(np.int32, copy=False)

        _safe_call(_LIB.LGBM_BoosterPredictForCSR(
1369
            self._handle,
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
            ptr_indptr,
            ctypes.c_int(type_ptr_indptr),
            csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
            ptr_data,
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csr.indptr)),
            ctypes.c_int64(len(csr.data)),
            ctypes.c_int64(csr.shape[1]),
            ctypes.c_int(predict_type),
            ctypes.c_int(start_iteration),
            ctypes.c_int(num_iteration),
            _c_str(self.pred_parameter),
            ctypes.byref(out_num_preds),
            preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
        if n_preds != out_num_preds.value:
            raise ValueError("Wrong length for predict results")
        return preds, nrow

    def __inner_predict_csr_sparse(
        self,
        csr: scipy.sparse.csr_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
1394
    ) -> Tuple[Union[List[scipy.sparse.csc_matrix], List[scipy.sparse.csr_matrix]], int]:
1395
1396
1397
1398
        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csr.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csr.data)
        csr_indices = csr.indices.astype(np.int32, copy=False)
        matrix_type = _C_API_MATRIX_TYPE_CSR
1399
        out_ptr_indptr: _ctypes_int_ptr
1400
1401
1402
1403
1404
        if type_ptr_indptr == _C_API_DTYPE_INT32:
            out_ptr_indptr = ctypes.POINTER(ctypes.c_int32)()
        else:
            out_ptr_indptr = ctypes.POINTER(ctypes.c_int64)()
        out_ptr_indices = ctypes.POINTER(ctypes.c_int32)()
1405
        out_ptr_data: _ctypes_float_ptr
1406
1407
1408
1409
1410
1411
        if type_ptr_data == _C_API_DTYPE_FLOAT32:
            out_ptr_data = ctypes.POINTER(ctypes.c_float)()
        else:
            out_ptr_data = ctypes.POINTER(ctypes.c_double)()
        out_shape = np.empty(2, dtype=np.int64)
        _safe_call(_LIB.LGBM_BoosterPredictSparseOutput(
1412
            self._handle,
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
            ptr_indptr,
            ctypes.c_int(type_ptr_indptr),
            csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
            ptr_data,
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csr.indptr)),
            ctypes.c_int64(len(csr.data)),
            ctypes.c_int64(csr.shape[1]),
            ctypes.c_int(predict_type),
            ctypes.c_int(start_iteration),
            ctypes.c_int(num_iteration),
            _c_str(self.pred_parameter),
            ctypes.c_int(matrix_type),
            out_shape.ctypes.data_as(ctypes.POINTER(ctypes.c_int64)),
            ctypes.byref(out_ptr_indptr),
            ctypes.byref(out_ptr_indices),
            ctypes.byref(out_ptr_data)))
        matrices = self.__create_sparse_native(
            cs=csr,
            out_shape=out_shape,
            out_ptr_indptr=out_ptr_indptr,
            out_ptr_indices=out_ptr_indices,
            out_ptr_data=out_ptr_data,
            indptr_type=type_ptr_indptr,
            data_type=type_ptr_data,
            is_csr=True
        )
        nrow = len(csr.indptr) - 1
        return matrices, nrow

1443
1444
1445
1446
1447
1448
1449
    def __pred_for_csr(
        self,
        csr: scipy.sparse.csr_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
    ) -> Tuple[np.ndarray, int]:
1450
        """Predict for a CSR data."""
1451
        if predict_type == _C_API_PREDICT_CONTRIB:
1452
1453
1454
1455
1456
1457
            return self.__inner_predict_csr_sparse(
                csr=csr,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
1458
        nrow = len(csr.indptr) - 1
1459
1460
        if nrow > _MAX_INT32:
            sections = [0] + list(np.arange(start=_MAX_INT32, stop=nrow, step=_MAX_INT32)) + [nrow]
1461
            # __get_num_preds() cannot work with nrow > MAX_INT32, so calculate overall number of predictions piecemeal
1462
            n_preds = [self.__get_num_preds(start_iteration, num_iteration, i, predict_type) for i in np.diff(sections)]
1463
            n_preds_sections = np.array([0] + n_preds, dtype=np.intp).cumsum()
1464
            preds = np.empty(sum(n_preds), dtype=np.float64)
1465
1466
            for (start_idx, end_idx), (start_idx_pred, end_idx_pred) in zip(zip(sections, sections[1:]),
                                                                            zip(n_preds_sections, n_preds_sections[1:])):
1467
                # avoid memory consumption by arrays concatenation operations
1468
1469
1470
1471
1472
1473
1474
                self.__inner_predict_csr(
                    csr=csr[start_idx:end_idx],
                    start_iteration=start_iteration,
                    num_iteration=num_iteration,
                    predict_type=predict_type,
                    preds=preds[start_idx_pred:end_idx_pred]
                )
1475
1476
            return preds, nrow
        else:
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
            return self.__inner_predict_csr(
                csr=csr,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type,
                preds=None
            )

    def __inner_predict_sparse_csc(
        self,
1487
1488
1489
1490
        csc: scipy.sparse.csc_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
1491
1492
1493
1494
1495
    ):
        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csc.data)
        csc_indices = csc.indices.astype(np.int32, copy=False)
        matrix_type = _C_API_MATRIX_TYPE_CSC
1496
        out_ptr_indptr: _ctypes_int_ptr
1497
1498
1499
1500
1501
        if type_ptr_indptr == _C_API_DTYPE_INT32:
            out_ptr_indptr = ctypes.POINTER(ctypes.c_int32)()
        else:
            out_ptr_indptr = ctypes.POINTER(ctypes.c_int64)()
        out_ptr_indices = ctypes.POINTER(ctypes.c_int32)()
1502
        out_ptr_data: _ctypes_float_ptr
1503
1504
1505
1506
1507
1508
        if type_ptr_data == _C_API_DTYPE_FLOAT32:
            out_ptr_data = ctypes.POINTER(ctypes.c_float)()
        else:
            out_ptr_data = ctypes.POINTER(ctypes.c_double)()
        out_shape = np.empty(2, dtype=np.int64)
        _safe_call(_LIB.LGBM_BoosterPredictSparseOutput(
1509
            self._handle,
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
            ptr_indptr,
            ctypes.c_int(type_ptr_indptr),
            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
            ptr_data,
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
            ctypes.c_int(predict_type),
            ctypes.c_int(start_iteration),
            ctypes.c_int(num_iteration),
            _c_str(self.pred_parameter),
            ctypes.c_int(matrix_type),
            out_shape.ctypes.data_as(ctypes.POINTER(ctypes.c_int64)),
            ctypes.byref(out_ptr_indptr),
            ctypes.byref(out_ptr_indices),
            ctypes.byref(out_ptr_data)))
        matrices = self.__create_sparse_native(
            cs=csc,
            out_shape=out_shape,
            out_ptr_indptr=out_ptr_indptr,
            out_ptr_indices=out_ptr_indices,
            out_ptr_data=out_ptr_data,
            indptr_type=type_ptr_indptr,
            data_type=type_ptr_data,
            is_csr=False
        )
        nrow = csc.shape[0]
        return matrices, nrow
Guolin Ke's avatar
Guolin Ke committed
1539

1540
1541
1542
1543
1544
1545
1546
    def __pred_for_csc(
        self,
        csc: scipy.sparse.csc_matrix,
        start_iteration: int,
        num_iteration: int,
        predict_type: int
    ) -> Tuple[np.ndarray, int]:
1547
        """Predict for a CSC data."""
Guolin Ke's avatar
Guolin Ke committed
1548
        nrow = csc.shape[0]
1549
        if nrow > _MAX_INT32:
1550
1551
1552
1553
1554
1555
            return self.__pred_for_csr(
                csr=csc.tocsr(),
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
1556
        if predict_type == _C_API_PREDICT_CONTRIB:
1557
1558
1559
1560
1561
1562
            return self.__inner_predict_sparse_csc(
                csc=csc,
                start_iteration=start_iteration,
                num_iteration=num_iteration,
                predict_type=predict_type
            )
1563
1564
1565
1566
1567
1568
        n_preds = self.__get_num_preds(
            start_iteration=start_iteration,
            num_iteration=num_iteration,
            nrow=nrow,
            predict_type=predict_type
        )
1569
        preds = np.empty(n_preds, dtype=np.float64)
Guolin Ke's avatar
Guolin Ke committed
1570
1571
        out_num_preds = ctypes.c_int64(0)

1572
1573
        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csc.data)
Guolin Ke's avatar
Guolin Ke committed
1574

1575
        assert csc.shape[0] <= _MAX_INT32
1576
        csc_indices = csc.indices.astype(np.int32, copy=False)
1577

Guolin Ke's avatar
Guolin Ke committed
1578
        _safe_call(_LIB.LGBM_BoosterPredictForCSC(
1579
            self._handle,
Guolin Ke's avatar
Guolin Ke committed
1580
            ptr_indptr,
1581
            ctypes.c_int(type_ptr_indptr),
1582
            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
Guolin Ke's avatar
Guolin Ke committed
1583
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1584
1585
1586
1587
1588
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
            ctypes.c_int(predict_type),
1589
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
1590
            ctypes.c_int(num_iteration),
1591
            _c_str(self.pred_parameter),
Guolin Ke's avatar
Guolin Ke committed
1592
            ctypes.byref(out_num_preds),
wxchan's avatar
wxchan committed
1593
            preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
wxchan's avatar
wxchan committed
1594
        if n_preds != out_num_preds.value:
1595
            raise ValueError("Wrong length for predict results")
wxchan's avatar
wxchan committed
1596
1597
        return preds, nrow

1598
    def current_iteration(self) -> int:
1599
1600
1601
1602
1603
1604
1605
1606
1607
        """Get the index of the current iteration.

        Returns
        -------
        cur_iter : int
            The index of the current iteration.
        """
        out_cur_iter = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetCurrentIteration(
1608
            self._handle,
1609
1610
1611
            ctypes.byref(out_cur_iter)))
        return out_cur_iter.value

wxchan's avatar
wxchan committed
1612

1613
class Dataset:
wxchan's avatar
wxchan committed
1614
    """Dataset in LightGBM."""
1615

1616
1617
    def __init__(
        self,
1618
        data: _LGBM_TrainDataType,
1619
        label: Optional[_LGBM_LabelType] = None,
1620
        reference: Optional["Dataset"] = None,
1621
1622
1623
        weight: Optional[_LGBM_WeightType] = None,
        group: Optional[_LGBM_GroupType] = None,
        init_score: Optional[_LGBM_InitScoreType] = None,
1624
1625
        feature_name: _LGBM_FeatureNameConfiguration = 'auto',
        categorical_feature: _LGBM_CategoricalFeatureConfiguration = 'auto',
1626
        params: Optional[Dict[str, Any]] = None,
1627
1628
        free_raw_data: bool = True,
        position: Optional[_LGBM_PositionType] = None,
1629
    ):
1630
        """Initialize Dataset.
1631

wxchan's avatar
wxchan committed
1632
1633
        Parameters
        ----------
1634
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence, list of numpy array or pyarrow Table
wxchan's avatar
wxchan committed
1635
            Data source of Dataset.
1636
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM) or a LightGBM Dataset binary file.
1637
        label : list, numpy 1-D array, pandas Series / one-column DataFrame, pyarrow Array, pyarrow ChunkedArray or None, optional (default=None)
1638
1639
1640
            Label of the data.
        reference : Dataset or None, optional (default=None)
            If this is Dataset for validation, training data should be used as reference.
1641
        weight : list, numpy 1-D array, pandas Series, pyarrow Array, pyarrow ChunkedArray or None, optional (default=None)
1642
            Weight for each instance. Weights should be non-negative.
1643
        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
1644
1645
1646
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
1647
1648
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
1649
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None, optional (default=None)
1650
            Init score for Dataset.
1651
        feature_name : list of str, or 'auto', optional (default="auto")
1652
            Feature names.
1653
            If 'auto' and data is pandas DataFrame or pyarrow Table, data columns names are used.
1654
        categorical_feature : list of str or int, or 'auto', optional (default="auto")
1655
1656
            Categorical features.
            If list of int, interpreted as indices.
1657
            If list of str, interpreted as feature names (need to specify ``feature_name`` as well).
1658
            If 'auto' and data is pandas DataFrame, pandas unordered categorical columns are used.
1659
            All values in categorical features will be cast to int32 and thus should be less than int32 max value (2147483647).
1660
            Large values could be memory consuming. Consider using consecutive integers starting from zero.
1661
            All negative values in categorical features will be treated as missing values.
1662
            The output cannot be monotonically constrained with respect to a categorical feature.
1663
            Floating point numbers in categorical features will be rounded towards 0.
Nikita Titov's avatar
Nikita Titov committed
1664
        params : dict or None, optional (default=None)
1665
            Other parameters for Dataset.
Nikita Titov's avatar
Nikita Titov committed
1666
        free_raw_data : bool, optional (default=True)
1667
            If True, raw data is freed after constructing inner Dataset.
1668
1669
        position : numpy 1-D array, pandas Series or None, optional (default=None)
            Position of items used in unbiased learning-to-rank task.
wxchan's avatar
wxchan committed
1670
        """
1671
        self._handle: Optional[_DatasetHandle] = None
wxchan's avatar
wxchan committed
1672
1673
1674
1675
1676
        self.data = data
        self.label = label
        self.reference = reference
        self.weight = weight
        self.group = group
1677
        self.position = position
1678
        self.init_score = init_score
1679
1680
        self.feature_name: _LGBM_FeatureNameConfiguration = feature_name
        self.categorical_feature: _LGBM_CategoricalFeatureConfiguration = categorical_feature
1681
        self.params = deepcopy(params)
wxchan's avatar
wxchan committed
1682
        self.free_raw_data = free_raw_data
1683
        self.used_indices: Optional[List[int]] = None
1684
        self._need_slice = True
1685
        self._predictor: Optional[_InnerPredictor] = None
1686
        self.pandas_categorical: Optional[List[List]] = None
1687
        self._params_back_up = None
1688
        self.version = 0
1689
        self._start_row = 0  # Used when pushing rows one by one.
wxchan's avatar
wxchan committed
1690

1691
    def __del__(self) -> None:
1692
1693
1694
1695
        try:
            self._free_handle()
        except AttributeError:
            pass
1696

1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
    def _create_sample_indices(self, total_nrow: int) -> np.ndarray:
        """Get an array of randomly chosen indices from this ``Dataset``.

        Indices are sampled without replacement.

        Parameters
        ----------
        total_nrow : int
            Total number of rows to sample from.
            If this value is greater than the value of parameter ``bin_construct_sample_cnt``, only ``bin_construct_sample_cnt`` indices will be used.
            If Dataset has multiple input data, this should be the sum of rows of every file.

        Returns
        -------
        indices : numpy array
            Indices for sampled data.
        """
1714
        param_str = _param_dict_to_str(self.get_params())
1715
1716
        sample_cnt = _get_sample_count(total_nrow, param_str)
        indices = np.empty(sample_cnt, dtype=np.int32)
1717
        ptr_data, _, _ = _c_int_array(indices)
1718
1719
1720
1721
        actual_sample_cnt = ctypes.c_int32(0)

        _safe_call(_LIB.LGBM_SampleIndices(
            ctypes.c_int32(total_nrow),
1722
            _c_str(param_str),
1723
1724
1725
            ptr_data,
            ctypes.byref(actual_sample_cnt),
        ))
1726
1727
        assert sample_cnt == actual_sample_cnt.value
        return indices
1728

1729
1730
1731
1732
1733
    def _init_from_ref_dataset(
        self,
        total_nrow: int,
        ref_dataset: _DatasetHandle
    ) -> 'Dataset':
1734
1735
1736
1737
1738
1739
        """Create dataset from a reference dataset.

        Parameters
        ----------
        total_nrow : int
            Number of rows expected to add to dataset.
1740
1741
        ref_dataset : object
            Handle of reference dataset to extract metadata from.
1742
1743
1744
1745
1746
1747

        Returns
        -------
        self : Dataset
            Constructed Dataset object.
        """
1748
        self._handle = ctypes.c_void_p()
1749
1750
1751
        _safe_call(_LIB.LGBM_DatasetCreateByReference(
            ref_dataset,
            ctypes.c_int64(total_nrow),
1752
            ctypes.byref(self._handle),
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765
1766
        ))
        return self

    def _init_from_sample(
        self,
        sample_data: List[np.ndarray],
        sample_indices: List[np.ndarray],
        sample_cnt: int,
        total_nrow: int,
    ) -> "Dataset":
        """Create Dataset from sampled data structures.

        Parameters
        ----------
1767
        sample_data : list of numpy array
1768
            Sample data for each column.
1769
        sample_indices : list of numpy array
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
            Sample data row index for each column.
        sample_cnt : int
            Number of samples.
        total_nrow : int
            Total number of rows for all input files.

        Returns
        -------
        self : Dataset
            Constructed Dataset object.
        """
        ncol = len(sample_indices)
        assert len(sample_data) == ncol, "#sample data column != #column indices"

        for i in range(ncol):
            if sample_data[i].dtype != np.double:
                raise ValueError(f"sample_data[{i}] type {sample_data[i].dtype} is not double")
            if sample_indices[i].dtype != np.int32:
                raise ValueError(f"sample_indices[{i}] type {sample_indices[i].dtype} is not int32")

        # c type: double**
        # each double* element points to start of each column of sample data.
1792
        sample_col_ptr: _ctypes_float_array = (ctypes.POINTER(ctypes.c_double) * ncol)()
1793
1794
        # c type int**
        # each int* points to start of indices for each column
1795
        indices_col_ptr: _ctypes_int_array = (ctypes.POINTER(ctypes.c_int32) * ncol)()
1796
        for i in range(ncol):
1797
1798
            sample_col_ptr[i] = _c_float_array(sample_data[i])[0]
            indices_col_ptr[i] = _c_int_array(sample_indices[i])[0]
1799
1800

        num_per_col = np.array([len(d) for d in sample_indices], dtype=np.int32)
1801
        num_per_col_ptr, _, _ = _c_int_array(num_per_col)
1802

1803
        self._handle = ctypes.c_void_p()
1804
        params_str = _param_dict_to_str(self.get_params())
1805
1806
1807
1808
1809
1810
1811
        _safe_call(_LIB.LGBM_DatasetCreateFromSampledColumn(
            ctypes.cast(sample_col_ptr, ctypes.POINTER(ctypes.POINTER(ctypes.c_double))),
            ctypes.cast(indices_col_ptr, ctypes.POINTER(ctypes.POINTER(ctypes.c_int32))),
            ctypes.c_int32(ncol),
            num_per_col_ptr,
            ctypes.c_int32(sample_cnt),
            ctypes.c_int32(total_nrow),
1812
            ctypes.c_int64(total_nrow),
1813
            _c_str(params_str),
1814
            ctypes.byref(self._handle),
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
        ))
        return self

    def _push_rows(self, data: np.ndarray) -> 'Dataset':
        """Add rows to Dataset.

        Parameters
        ----------
        data : numpy 1-D array
            New data to add to the Dataset.

        Returns
        -------
        self : Dataset
            Dataset object.
        """
        nrow, ncol = data.shape
        data = data.reshape(data.size)
1833
        data_ptr, data_type, _ = _c_float_array(data)
1834
1835

        _safe_call(_LIB.LGBM_DatasetPushRows(
1836
            self._handle,
1837
1838
1839
1840
1841
1842
1843
1844
1845
            data_ptr,
            data_type,
            ctypes.c_int32(nrow),
            ctypes.c_int32(ncol),
            ctypes.c_int32(self._start_row),
        ))
        self._start_row += nrow
        return self

1846
    def get_params(self) -> Dict[str, Any]:
1847
1848
1849
1850
        """Get the used parameters in the Dataset.

        Returns
        -------
1851
        params : dict
1852
1853
1854
1855
1856
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
            The used parameters in this Dataset object.
        """
        if self.params is not None:
            # no min_data, nthreads and verbose in this function
            dataset_params = _ConfigAliases.get("bin_construct_sample_cnt",
                                                "categorical_feature",
                                                "data_random_seed",
                                                "enable_bundle",
                                                "feature_pre_filter",
                                                "forcedbins_filename",
                                                "group_column",
                                                "header",
                                                "ignore_column",
                                                "is_enable_sparse",
                                                "label_column",
1867
                                                "linear_tree",
1868
1869
1870
1871
                                                "max_bin",
                                                "max_bin_by_feature",
                                                "min_data_in_bin",
                                                "pre_partition",
Nikita Titov's avatar
Nikita Titov committed
1872
                                                "precise_float_parser",
1873
1874
1875
1876
1877
                                                "two_round",
                                                "use_missing",
                                                "weight_column",
                                                "zero_as_missing")
            return {k: v for k, v in self.params.items() if k in dataset_params}
1878
1879
        else:
            return {}
1880

1881
    def _free_handle(self) -> "Dataset":
1882
1883
1884
        if self._handle is not None:
            _safe_call(_LIB.LGBM_DatasetFree(self._handle))
            self._handle = None
1885
        self._need_slice = True
Guolin Ke's avatar
Guolin Ke committed
1886
1887
        if self.used_indices is not None:
            self.data = None
Nikita Titov's avatar
Nikita Titov committed
1888
        return self
wxchan's avatar
wxchan committed
1889

1890
1891
1892
    def _set_init_score_by_predictor(
        self,
        predictor: Optional[_InnerPredictor],
1893
        data: _LGBM_TrainDataType,
1894
        used_indices: Optional[Union[List[int], np.ndarray]]
1895
    ) -> "Dataset":
Guolin Ke's avatar
Guolin Ke committed
1896
        data_has_header = False
1897
        if isinstance(data, (str, Path)) and self.params is not None:
Guolin Ke's avatar
Guolin Ke committed
1898
            # check data has header or not
1899
            data_has_header = any(self.params.get(alias, False) for alias in _ConfigAliases.get("header"))
Guolin Ke's avatar
Guolin Ke committed
1900
        num_data = self.num_data()
1901
        if predictor is not None:
1902
1903
1904
1905
1906
            init_score: Union[np.ndarray, scipy.sparse.spmatrix] = predictor.predict(
                data=data,
                raw_score=True,
                data_has_header=data_has_header
            )
1907
            init_score = init_score.ravel()
1908
            if used_indices is not None:
1909
                assert not self._need_slice
1910
                if isinstance(data, (str, Path)):
1911
                    sub_init_score = np.empty(num_data * predictor.num_class, dtype=np.float64)
1912
                    assert num_data == len(used_indices)
1913
1914
                    for i in range(len(used_indices)):
                        for j in range(predictor.num_class):
1915
1916
1917
1918
                            sub_init_score[i * predictor.num_class + j] = init_score[used_indices[i] * predictor.num_class + j]
                    init_score = sub_init_score
            if predictor.num_class > 1:
                # need to regroup init_score
1919
                new_init_score = np.empty(init_score.size, dtype=np.float64)
1920
1921
                for i in range(num_data):
                    for j in range(predictor.num_class):
1922
1923
1924
                        new_init_score[j * num_data + i] = init_score[i * predictor.num_class + j]
                init_score = new_init_score
        elif self.init_score is not None:
1925
            init_score = np.full_like(self.init_score, fill_value=0.0, dtype=np.float64)
1926
1927
        else:
            return self
Guolin Ke's avatar
Guolin Ke committed
1928
        self.set_init_score(init_score)
1929
        return self
Guolin Ke's avatar
Guolin Ke committed
1930

1931
1932
    def _lazy_init(
        self,
1933
        data: Optional[_LGBM_TrainDataType],
1934
1935
1936
1937
1938
1939
1940
1941
        label: Optional[_LGBM_LabelType],
        reference: Optional["Dataset"],
        weight: Optional[_LGBM_WeightType],
        group: Optional[_LGBM_GroupType],
        init_score: Optional[_LGBM_InitScoreType],
        predictor: Optional[_InnerPredictor],
        feature_name: _LGBM_FeatureNameConfiguration,
        categorical_feature: _LGBM_CategoricalFeatureConfiguration,
1942
1943
        params: Optional[Dict[str, Any]],
        position: Optional[_LGBM_PositionType]
1944
    ) -> "Dataset":
wxchan's avatar
wxchan committed
1945
        if data is None:
1946
            self._handle = None
Nikita Titov's avatar
Nikita Titov committed
1947
            return self
Guolin Ke's avatar
Guolin Ke committed
1948
1949
1950
        if reference is not None:
            self.pandas_categorical = reference.pandas_categorical
            categorical_feature = reference.categorical_feature
1951
1952
1953
1954
1955
1956
1957
        if isinstance(data, pd_DataFrame):
            data, feature_name, categorical_feature, self.pandas_categorical = _data_from_pandas(
                data=data,
                feature_name=feature_name,
                categorical_feature=categorical_feature,
                pandas_categorical=self.pandas_categorical
            )
Guolin Ke's avatar
Guolin Ke committed
1958

1959
        # process for args
wxchan's avatar
wxchan committed
1960
        params = {} if params is None else params
1961
        args_names = inspect.signature(self.__class__._lazy_init).parameters.keys()
1962
        for key in params.keys():
1963
            if key in args_names:
1964
1965
                _log_warning(f'{key} keyword has been found in `params` and will be ignored.\n'
                             f'Please use {key} argument of the Dataset constructor to pass this parameter.')
1966
        # get categorical features
1967
        if isinstance(categorical_feature, list):
1968
1969
            categorical_indices = set()
            feature_dict = {}
1970
            if isinstance(feature_name, list):
1971
1972
                feature_dict = {name: i for i, name in enumerate(feature_name)}
            for name in categorical_feature:
1973
                if isinstance(name, str) and name in feature_dict:
1974
                    categorical_indices.add(feature_dict[name])
1975
                elif isinstance(name, int):
1976
1977
                    categorical_indices.add(name)
                else:
1978
                    raise TypeError(f"Wrong type({type(name).__name__}) or unknown name({name}) in categorical_feature")
1979
            if categorical_indices:
1980
1981
                for cat_alias in _ConfigAliases.get("categorical_feature"):
                    if cat_alias in params:
1982
                        # If the params[cat_alias] is equal to categorical_indices, do not report the warning.
1983
                        if not (isinstance(params[cat_alias], list) and set(params[cat_alias]) == categorical_indices):
1984
                            _log_warning(f'{cat_alias} in param dict is overridden.')
1985
                        params.pop(cat_alias, None)
1986
                params['categorical_column'] = sorted(categorical_indices)
1987

1988
        params_str = _param_dict_to_str(params)
1989
        self.params = params
1990
        # process for reference dataset
wxchan's avatar
wxchan committed
1991
        ref_dataset = None
wxchan's avatar
wxchan committed
1992
        if isinstance(reference, Dataset):
1993
            ref_dataset = reference.construct()._handle
wxchan's avatar
wxchan committed
1994
1995
        elif reference is not None:
            raise TypeError('Reference dataset should be None or dataset instance')
1996
        # start construct data
1997
        if isinstance(data, (str, Path)):
1998
            self._handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
1999
            _safe_call(_LIB.LGBM_DatasetCreateFromFile(
2000
2001
                _c_str(str(data)),
                _c_str(params_str),
wxchan's avatar
wxchan committed
2002
                ref_dataset,
2003
                ctypes.byref(self._handle)))
wxchan's avatar
wxchan committed
2004
2005
        elif isinstance(data, scipy.sparse.csr_matrix):
            self.__init_from_csr(data, params_str, ref_dataset)
Guolin Ke's avatar
Guolin Ke committed
2006
2007
        elif isinstance(data, scipy.sparse.csc_matrix):
            self.__init_from_csc(data, params_str, ref_dataset)
wxchan's avatar
wxchan committed
2008
2009
        elif isinstance(data, np.ndarray):
            self.__init_from_np2d(data, params_str, ref_dataset)
2010
2011
2012
        elif _is_pyarrow_table(data):
            self.__init_from_pyarrow_table(data, params_str, ref_dataset)
            feature_name = data.column_names
2013
        elif isinstance(data, list) and len(data) > 0:
2014
            if _is_list_of_numpy_arrays(data):
2015
                self.__init_from_list_np2d(data, params_str, ref_dataset)
2016
            elif _is_list_of_sequences(data):
2017
2018
2019
2020
2021
                self.__init_from_seqs(data, ref_dataset)
            else:
                raise TypeError('Data list can only be of ndarray or Sequence')
        elif isinstance(data, Sequence):
            self.__init_from_seqs([data], ref_dataset)
2022
        elif isinstance(data, dt_DataTable):
2023
            self.__init_from_np2d(data.to_numpy(), params_str, ref_dataset)
wxchan's avatar
wxchan committed
2024
2025
2026
2027
        else:
            try:
                csr = scipy.sparse.csr_matrix(data)
                self.__init_from_csr(csr, params_str, ref_dataset)
2028
2029
            except BaseException as err:
                raise TypeError(f'Cannot initialize Dataset from {type(data).__name__}') from err
wxchan's avatar
wxchan committed
2030
2031
2032
        if label is not None:
            self.set_label(label)
        if self.get_label() is None:
2033
            raise ValueError("Label should not be None")
wxchan's avatar
wxchan committed
2034
2035
2036
2037
        if weight is not None:
            self.set_weight(weight)
        if group is not None:
            self.set_group(group)
2038
2039
        if position is not None:
            self.set_position(position)
2040
2041
        if isinstance(predictor, _InnerPredictor):
            if self._predictor is None and init_score is not None:
2042
                _log_warning("The init_score will be overridden by the prediction of init_model.")
2043
2044
2045
2046
2047
            self._set_init_score_by_predictor(
                predictor=predictor,
                data=data,
                used_indices=None
            )
2048
2049
        elif init_score is not None:
            self.set_init_score(init_score)
Guolin Ke's avatar
Guolin Ke committed
2050
        elif predictor is not None:
2051
            raise TypeError(f'Wrong predictor type {type(predictor).__name__}')
Guolin Ke's avatar
Guolin Ke committed
2052
        # set feature names
Nikita Titov's avatar
Nikita Titov committed
2053
        return self.set_feature_name(feature_name)
wxchan's avatar
wxchan committed
2054

2055
2056
    @staticmethod
    def _yield_row_from_seqlist(seqs: List[Sequence], indices: Iterable[int]):
2057
2058
2059
2060
2061
2062
2063
2064
2065
2066
2067
2068
2069
2070
2071
2072
2073
2074
2075
2076
2077
2078
2079
2080
2081
        offset = 0
        seq_id = 0
        seq = seqs[seq_id]
        for row_id in indices:
            assert row_id >= offset, "sample indices are expected to be monotonic"
            while row_id >= offset + len(seq):
                offset += len(seq)
                seq_id += 1
                seq = seqs[seq_id]
            id_in_seq = row_id - offset
            row = seq[id_in_seq]
            yield row if row.flags['OWNDATA'] else row.copy()

    def __sample(self, seqs: List[Sequence], total_nrow: int) -> Tuple[List[np.ndarray], List[np.ndarray]]:
        """Sample data from seqs.

        Mimics behavior in c_api.cpp:LGBM_DatasetCreateFromMats()

        Returns
        -------
            sampled_rows, sampled_row_indices
        """
        indices = self._create_sample_indices(total_nrow)

        # Select sampled rows, transpose to column order.
2082
        sampled = np.array(list(self._yield_row_from_seqlist(seqs, indices)))
2083
2084
2085
2086
2087
2088
2089
2090
2091
2092
2093
2094
2095
2096
2097
        sampled = sampled.T

        filtered = []
        filtered_idx = []
        sampled_row_range = np.arange(len(indices), dtype=np.int32)
        for col in sampled:
            col_predicate = (np.abs(col) > ZERO_THRESHOLD) | np.isnan(col)
            filtered_col = col[col_predicate]
            filtered_row_idx = sampled_row_range[col_predicate]

            filtered.append(filtered_col)
            filtered_idx.append(filtered_row_idx)

        return filtered, filtered_idx

2098
2099
2100
    def __init_from_seqs(
        self,
        seqs: List[Sequence],
2101
        ref_dataset: Optional[_DatasetHandle]
2102
    ) -> "Dataset":
2103
2104
2105
2106
2107
2108
2109
2110
2111
2112
2113
2114
2115
2116
        """
        Initialize data from list of Sequence objects.

        Sequence: Generic Data Access Object
            Supports random access and access by batch if properly defined by user

        Data scheme uniformity are trusted, not checked
        """
        total_nrow = sum(len(seq) for seq in seqs)

        # create validation dataset from ref_dataset
        if ref_dataset is not None:
            self._init_from_ref_dataset(total_nrow, ref_dataset)
        else:
2117
            param_str = _param_dict_to_str(self.get_params())
2118
2119
2120
2121
2122
2123
2124
2125
2126
2127
2128
2129
2130
            sample_cnt = _get_sample_count(total_nrow, param_str)

            sample_data, col_indices = self.__sample(seqs, total_nrow)
            self._init_from_sample(sample_data, col_indices, sample_cnt, total_nrow)

        for seq in seqs:
            nrow = len(seq)
            batch_size = getattr(seq, 'batch_size', None) or Sequence.batch_size
            for start in range(0, nrow, batch_size):
                end = min(start + batch_size, nrow)
                self._push_rows(seq[start:end])
        return self

2131
2132
2133
2134
2135
2136
    def __init_from_np2d(
        self,
        mat: np.ndarray,
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
2137
        """Initialize data from a 2-D numpy matrix."""
wxchan's avatar
wxchan committed
2138
2139
2140
        if len(mat.shape) != 2:
            raise ValueError('Input numpy.ndarray must be 2 dimensional')

2141
        self._handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
2142
2143
        if mat.dtype == np.float32 or mat.dtype == np.float64:
            data = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
2144
        else:  # change non-float data to float data, need to copy
wxchan's avatar
wxchan committed
2145
2146
            data = np.array(mat.reshape(mat.size), dtype=np.float32)

2147
        ptr_data, type_ptr_data, _ = _c_float_array(data)
wxchan's avatar
wxchan committed
2148
2149
        _safe_call(_LIB.LGBM_DatasetCreateFromMat(
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
2150
            ctypes.c_int(type_ptr_data),
2151
2152
            ctypes.c_int32(mat.shape[0]),
            ctypes.c_int32(mat.shape[1]),
2153
            ctypes.c_int(_C_API_IS_ROW_MAJOR),
2154
            _c_str(params_str),
wxchan's avatar
wxchan committed
2155
            ref_dataset,
2156
            ctypes.byref(self._handle)))
Nikita Titov's avatar
Nikita Titov committed
2157
        return self
wxchan's avatar
wxchan committed
2158

2159
2160
2161
2162
2163
2164
    def __init_from_list_np2d(
        self,
        mats: List[np.ndarray],
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
2165
        """Initialize data from a list of 2-D numpy matrices."""
2166
        ncol = mats[0].shape[1]
2167
        nrow = np.empty((len(mats),), np.int32)
2168
        ptr_data: _ctypes_float_array
2169
2170
2171
2172
2173
2174
        if mats[0].dtype == np.float64:
            ptr_data = (ctypes.POINTER(ctypes.c_double) * len(mats))()
        else:
            ptr_data = (ctypes.POINTER(ctypes.c_float) * len(mats))()

        holders = []
2175
        type_ptr_data = -1
2176
2177
2178
2179
2180
2181
2182
2183
2184
2185
2186
2187

        for i, mat in enumerate(mats):
            if len(mat.shape) != 2:
                raise ValueError('Input numpy.ndarray must be 2 dimensional')

            if mat.shape[1] != ncol:
                raise ValueError('Input arrays must have same number of columns')

            nrow[i] = mat.shape[0]

            if mat.dtype == np.float32 or mat.dtype == np.float64:
                mats[i] = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
2188
            else:  # change non-float data to float data, need to copy
2189
2190
                mats[i] = np.array(mat.reshape(mat.size), dtype=np.float32)

2191
            chunk_ptr_data, chunk_type_ptr_data, holder = _c_float_array(mats[i])
2192
            if type_ptr_data != -1 and chunk_type_ptr_data != type_ptr_data:
2193
2194
2195
2196
2197
                raise ValueError('Input chunks must have same type')
            ptr_data[i] = chunk_ptr_data
            type_ptr_data = chunk_type_ptr_data
            holders.append(holder)

2198
        self._handle = ctypes.c_void_p()
2199
        _safe_call(_LIB.LGBM_DatasetCreateFromMats(
2200
            ctypes.c_int32(len(mats)),
2201
2202
2203
            ctypes.cast(ptr_data, ctypes.POINTER(ctypes.POINTER(ctypes.c_double))),
            ctypes.c_int(type_ptr_data),
            nrow.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
2204
            ctypes.c_int32(ncol),
2205
            ctypes.c_int(_C_API_IS_ROW_MAJOR),
2206
            _c_str(params_str),
2207
            ref_dataset,
2208
            ctypes.byref(self._handle)))
Nikita Titov's avatar
Nikita Titov committed
2209
        return self
2210

2211
2212
2213
2214
2215
2216
    def __init_from_csr(
        self,
        csr: scipy.sparse.csr_matrix,
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
2217
        """Initialize data from a CSR matrix."""
wxchan's avatar
wxchan committed
2218
        if len(csr.indices) != len(csr.data):
2219
            raise ValueError(f'Length mismatch: {len(csr.indices)} vs {len(csr.data)}')
2220
        self._handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
2221

2222
2223
        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csr.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csr.data)
wxchan's avatar
wxchan committed
2224

2225
        assert csr.shape[1] <= _MAX_INT32
2226
        csr_indices = csr.indices.astype(np.int32, copy=False)
2227

wxchan's avatar
wxchan committed
2228
2229
        _safe_call(_LIB.LGBM_DatasetCreateFromCSR(
            ptr_indptr,
Guolin Ke's avatar
Guolin Ke committed
2230
            ctypes.c_int(type_ptr_indptr),
2231
            csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
wxchan's avatar
wxchan committed
2232
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
2233
2234
2235
2236
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csr.indptr)),
            ctypes.c_int64(len(csr.data)),
            ctypes.c_int64(csr.shape[1]),
2237
            _c_str(params_str),
wxchan's avatar
wxchan committed
2238
            ref_dataset,
2239
            ctypes.byref(self._handle)))
Nikita Titov's avatar
Nikita Titov committed
2240
        return self
wxchan's avatar
wxchan committed
2241

2242
2243
2244
2245
2246
2247
    def __init_from_csc(
        self,
        csc: scipy.sparse.csc_matrix,
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
2248
        """Initialize data from a CSC matrix."""
Guolin Ke's avatar
Guolin Ke committed
2249
        if len(csc.indices) != len(csc.data):
2250
            raise ValueError(f'Length mismatch: {len(csc.indices)} vs {len(csc.data)}')
2251
        self._handle = ctypes.c_void_p()
Guolin Ke's avatar
Guolin Ke committed
2252

2253
2254
        ptr_indptr, type_ptr_indptr, __ = _c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = _c_float_array(csc.data)
Guolin Ke's avatar
Guolin Ke committed
2255

2256
        assert csc.shape[0] <= _MAX_INT32
2257
        csc_indices = csc.indices.astype(np.int32, copy=False)
2258

Guolin Ke's avatar
Guolin Ke committed
2259
2260
        _safe_call(_LIB.LGBM_DatasetCreateFromCSC(
            ptr_indptr,
Guolin Ke's avatar
Guolin Ke committed
2261
            ctypes.c_int(type_ptr_indptr),
2262
            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
Guolin Ke's avatar
Guolin Ke committed
2263
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
2264
2265
2266
2267
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
2268
            _c_str(params_str),
Guolin Ke's avatar
Guolin Ke committed
2269
            ref_dataset,
2270
            ctypes.byref(self._handle)))
Nikita Titov's avatar
Nikita Titov committed
2271
        return self
Guolin Ke's avatar
Guolin Ke committed
2272

2273
2274
2275
2276
2277
2278
2279
2280
2281
2282
2283
2284
2285
2286
2287
2288
2289
2290
2291
2292
2293
2294
2295
2296
2297
2298
    def __init_from_pyarrow_table(
        self,
        table: pa_Table,
        params_str: str,
        ref_dataset: Optional[_DatasetHandle]
    ) -> "Dataset":
        """Initialize data from a PyArrow table."""
        if not PYARROW_INSTALLED:
            raise LightGBMError("Cannot init dataframe from Arrow without `pyarrow` installed.")

        # Check that the input is valid: we only handle numbers (for now)
        if not all(arrow_is_integer(t) or arrow_is_floating(t) for t in table.schema.types):
            raise ValueError("Arrow table may only have integer or floating point datatypes")

        # Export Arrow table to C
        c_array = _export_arrow_to_c(table)
        self._handle = ctypes.c_void_p()
        _safe_call(_LIB.LGBM_DatasetCreateFromArrow(
            ctypes.c_int64(c_array.n_chunks),
            ctypes.c_void_p(c_array.chunks_ptr),
            ctypes.c_void_p(c_array.schema_ptr),
            _c_str(params_str),
            ref_dataset,
            ctypes.byref(self._handle)))
        return self

2299
    @staticmethod
2300
    def _compare_params_for_warning(
2301
2302
        params: Dict[str, Any],
        other_params: Dict[str, Any],
2303
2304
2305
        ignore_keys: Set[str]
    ) -> bool:
        """Compare two dictionaries with params ignoring some keys.
2306

2307
2308
2309
2310
        It is only for the warning purpose.

        Parameters
        ----------
2311
        params : dict
2312
            One dictionary with parameters to compare.
2313
        other_params : dict
2314
2315
2316
            Another dictionary with parameters to compare.
        ignore_keys : set
            Keys that should be ignored during comparing two dictionaries.
2317
2318
2319

        Returns
        -------
2320
2321
        compare_result : bool
          Returns whether two dictionaries with params are equal.
2322
2323
2324
2325
2326
2327
2328
2329
2330
2331
2332
        """
        for k in other_params:
            if k not in ignore_keys:
                if k not in params or params[k] != other_params[k]:
                    return False
        for k in params:
            if k not in ignore_keys:
                if k not in other_params or params[k] != other_params[k]:
                    return False
        return True

2333
    def construct(self) -> "Dataset":
2334
2335
2336
2337
2338
        """Lazy init.

        Returns
        -------
        self : Dataset
Nikita Titov's avatar
Nikita Titov committed
2339
            Constructed Dataset object.
2340
        """
2341
        if self._handle is None:
wxchan's avatar
wxchan committed
2342
            if self.reference is not None:
2343
                reference_params = self.reference.get_params()
2344
2345
                params = self.get_params()
                if params != reference_params:
2346
2347
2348
2349
2350
                    if not self._compare_params_for_warning(
                        params=params,
                        other_params=reference_params,
                        ignore_keys=_ConfigAliases.get("categorical_feature")
                    ):
2351
                        _log_warning('Overriding the parameters from Reference Dataset.')
2352
                    self._update_params(reference_params)
wxchan's avatar
wxchan committed
2353
                if self.used_indices is None:
2354
                    # create valid
2355
                    self._lazy_init(data=self.data, label=self.label, reference=self.reference,
2356
                                    weight=self.weight, group=self.group, position=self.position,
2357
                                    init_score=self.init_score, predictor=self._predictor,
2358
                                    feature_name=self.feature_name, categorical_feature='auto', params=self.params)
wxchan's avatar
wxchan committed
2359
                else:
2360
                    # construct subset
2361
                    used_indices = _list_to_1d_numpy(self.used_indices, dtype=np.int32, name='used_indices')
2362
                    assert used_indices.flags.c_contiguous
Guolin Ke's avatar
Guolin Ke committed
2363
                    if self.reference.group is not None:
2364
                        group_info = np.array(self.reference.group).astype(np.int32, copy=False)
2365
                        _, self.group = np.unique(np.repeat(range(len(group_info)), repeats=group_info)[self.used_indices],
2366
                                                  return_counts=True)
2367
                    self._handle = ctypes.c_void_p()
2368
                    params_str = _param_dict_to_str(self.params)
wxchan's avatar
wxchan committed
2369
                    _safe_call(_LIB.LGBM_DatasetGetSubset(
2370
                        self.reference.construct()._handle,
wxchan's avatar
wxchan committed
2371
                        used_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
2372
                        ctypes.c_int32(used_indices.shape[0]),
2373
                        _c_str(params_str),
2374
                        ctypes.byref(self._handle)))
Guolin Ke's avatar
Guolin Ke committed
2375
2376
                    if not self.free_raw_data:
                        self.get_data()
Guolin Ke's avatar
Guolin Ke committed
2377
2378
                    if self.group is not None:
                        self.set_group(self.group)
2379
2380
                    if self.position is not None:
                        self.set_position(self.position)
wxchan's avatar
wxchan committed
2381
2382
                    if self.get_label() is None:
                        raise ValueError("Label should not be None.")
Guolin Ke's avatar
Guolin Ke committed
2383
2384
                    if isinstance(self._predictor, _InnerPredictor) and self._predictor is not self.reference._predictor:
                        self.get_data()
2385
2386
2387
2388
2389
                        self._set_init_score_by_predictor(
                            predictor=self._predictor,
                            data=self.data,
                            used_indices=used_indices
                        )
wxchan's avatar
wxchan committed
2390
            else:
2391
                # create train
2392
                self._lazy_init(data=self.data, label=self.label, reference=None,
2393
2394
                                weight=self.weight, group=self.group,
                                init_score=self.init_score, predictor=self._predictor,
2395
2396
                                feature_name=self.feature_name, categorical_feature=self.categorical_feature,
                                params=self.params, position=self.position)
wxchan's avatar
wxchan committed
2397
2398
            if self.free_raw_data:
                self.data = None
2399
            self.feature_name = self.get_feature_name()
wxchan's avatar
wxchan committed
2400
        return self
wxchan's avatar
wxchan committed
2401

2402
2403
    def create_valid(
        self,
2404
        data: _LGBM_TrainDataType,
2405
        label: Optional[_LGBM_LabelType] = None,
2406
2407
2408
        weight: Optional[_LGBM_WeightType] = None,
        group: Optional[_LGBM_GroupType] = None,
        init_score: Optional[_LGBM_InitScoreType] = None,
2409
2410
        params: Optional[Dict[str, Any]] = None,
        position: Optional[_LGBM_PositionType] = None
2411
    ) -> "Dataset":
2412
        """Create validation data align with current Dataset.
wxchan's avatar
wxchan committed
2413
2414
2415

        Parameters
        ----------
2416
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array
wxchan's avatar
wxchan committed
2417
            Data source of Dataset.
2418
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM) or a LightGBM Dataset binary file.
2419
        label : list, numpy 1-D array, pandas Series / one-column DataFrame, pyarrow Array, pyarrow ChunkedArray or None, optional (default=None)
2420
            Label of the data.
2421
        weight : list, numpy 1-D array, pandas Series, pyarrow Array, pyarrow ChunkedArray or None, optional (default=None)
2422
            Weight for each instance. Weights should be non-negative.
2423
        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
2424
2425
2426
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
2427
2428
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
2429
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None, optional (default=None)
2430
            Init score for Dataset.
Nikita Titov's avatar
Nikita Titov committed
2431
        params : dict or None, optional (default=None)
2432
            Other parameters for validation Dataset.
2433
2434
        position : numpy 1-D array, pandas Series or None, optional (default=None)
            Position of items used in unbiased learning-to-rank task.
2435
2436
2437

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2438
2439
        valid : Dataset
            Validation Dataset with reference to self.
wxchan's avatar
wxchan committed
2440
        """
2441
        ret = Dataset(data, label=label, reference=self,
2442
                      weight=weight, group=group, position=position, init_score=init_score,
2443
                      params=params, free_raw_data=self.free_raw_data)
wxchan's avatar
wxchan committed
2444
        ret._predictor = self._predictor
2445
        ret.pandas_categorical = self.pandas_categorical
wxchan's avatar
wxchan committed
2446
        return ret
wxchan's avatar
wxchan committed
2447

2448
2449
2450
2451
2452
    def subset(
        self,
        used_indices: List[int],
        params: Optional[Dict[str, Any]] = None
    ) -> "Dataset":
2453
        """Get subset of current Dataset.
wxchan's avatar
wxchan committed
2454
2455
2456
2457

        Parameters
        ----------
        used_indices : list of int
2458
            Indices used to create the subset.
Nikita Titov's avatar
Nikita Titov committed
2459
        params : dict or None, optional (default=None)
2460
            These parameters will be passed to Dataset constructor.
2461
2462
2463
2464
2465

        Returns
        -------
        subset : Dataset
            Subset of the current Dataset.
wxchan's avatar
wxchan committed
2466
        """
wxchan's avatar
wxchan committed
2467
2468
        if params is None:
            params = self.params
wxchan's avatar
wxchan committed
2469
        ret = Dataset(None, reference=self, feature_name=self.feature_name,
2470
2471
                      categorical_feature=self.categorical_feature, params=params,
                      free_raw_data=self.free_raw_data)
wxchan's avatar
wxchan committed
2472
        ret._predictor = self._predictor
2473
        ret.pandas_categorical = self.pandas_categorical
2474
        ret.used_indices = sorted(used_indices)
wxchan's avatar
wxchan committed
2475
2476
        return ret

2477
    def save_binary(self, filename: Union[str, Path]) -> "Dataset":
2478
        """Save Dataset to a binary file.
wxchan's avatar
wxchan committed
2479

2480
2481
2482
2483
2484
        .. note::

            Please note that `init_score` is not saved in binary file.
            If you need it, please set it again after loading Dataset.

wxchan's avatar
wxchan committed
2485
2486
        Parameters
        ----------
2487
        filename : str or pathlib.Path
wxchan's avatar
wxchan committed
2488
            Name of the output file.
Nikita Titov's avatar
Nikita Titov committed
2489
2490
2491
2492
2493

        Returns
        -------
        self : Dataset
            Returns self.
wxchan's avatar
wxchan committed
2494
2495
        """
        _safe_call(_LIB.LGBM_DatasetSaveBinary(
2496
            self.construct()._handle,
2497
            _c_str(str(filename))))
Nikita Titov's avatar
Nikita Titov committed
2498
        return self
wxchan's avatar
wxchan committed
2499

2500
    def _update_params(self, params: Optional[Dict[str, Any]]) -> "Dataset":
2501
2502
        if not params:
            return self
2503
        params = deepcopy(params)
2504
2505
2506
2507
2508

        def update():
            if not self.params:
                self.params = params
            else:
2509
                self._params_back_up = deepcopy(self.params)
2510
2511
                self.params.update(params)

2512
        if self._handle is None:
2513
2514
2515
            update()
        elif params is not None:
            ret = _LIB.LGBM_DatasetUpdateParamChecking(
2516
2517
                _c_str(_param_dict_to_str(self.params)),
                _c_str(_param_dict_to_str(params)))
2518
2519
2520
2521
2522
2523
            if ret != 0:
                # could be updated if data is not freed
                if self.data is not None:
                    update()
                    self._free_handle()
                else:
2524
                    raise LightGBMError(_LIB.LGBM_GetLastError().decode('utf-8'))
Nikita Titov's avatar
Nikita Titov committed
2525
        return self
wxchan's avatar
wxchan committed
2526

2527
    def _reverse_update_params(self) -> "Dataset":
2528
        if self._handle is None:
2529
2530
            self.params = deepcopy(self._params_back_up)
            self._params_back_up = None
Nikita Titov's avatar
Nikita Titov committed
2531
        return self
2532

2533
2534
2535
    def set_field(
        self,
        field_name: str,
2536
        data: Optional[Union[List[List[float]], List[List[int]], List[float], List[int], np.ndarray, pd_Series, pd_DataFrame, pa_Array, pa_ChunkedArray]]
2537
    ) -> "Dataset":
wxchan's avatar
wxchan committed
2538
        """Set property into the Dataset.
wxchan's avatar
wxchan committed
2539
2540
2541

        Parameters
        ----------
2542
        field_name : str
2543
            The field name of the information.
2544
        data : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), pyarrow Array, pyarrow ChunkedArray or None
2545
            The data to be set.
Nikita Titov's avatar
Nikita Titov committed
2546
2547
2548
2549
2550

        Returns
        -------
        self : Dataset
            Dataset with set property.
wxchan's avatar
wxchan committed
2551
        """
2552
        if self._handle is None:
2553
            raise Exception(f"Cannot set {field_name} before construct dataset")
wxchan's avatar
wxchan committed
2554
        if data is None:
2555
            # set to None
wxchan's avatar
wxchan committed
2556
            _safe_call(_LIB.LGBM_DatasetSetField(
2557
                self._handle,
2558
                _c_str(field_name),
wxchan's avatar
wxchan committed
2559
                None,
Guolin Ke's avatar
Guolin Ke committed
2560
                ctypes.c_int(0),
2561
                ctypes.c_int(_FIELD_TYPE_MAPPER[field_name])))
Nikita Titov's avatar
Nikita Titov committed
2562
            return self
2563
2564
2565
2566
2567
2568
2569
2570
2571
2572
2573
2574
2575
2576

        # If the data is a arrow data, we can just pass it to C
        if _is_pyarrow_array(data):
            c_array = _export_arrow_to_c(data)
            _safe_call(_LIB.LGBM_DatasetSetFieldFromArrow(
                self._handle,
                _c_str(field_name),
                ctypes.c_int64(c_array.n_chunks),
                ctypes.c_void_p(c_array.chunks_ptr),
                ctypes.c_void_p(c_array.schema_ptr),
            ))
            self.version += 1
            return self

2577
        dtype: "np.typing.DTypeLike"
2578
        if field_name == 'init_score':
Guolin Ke's avatar
Guolin Ke committed
2579
            dtype = np.float64
2580
            if _is_1d_collection(data):
2581
                data = _list_to_1d_numpy(data, dtype=dtype, name=field_name)
2582
            elif _is_2d_collection(data):
2583
                data = _data_to_2d_numpy(data, dtype=dtype, name=field_name)
2584
2585
2586
2587
2588
2589
2590
                data = data.ravel(order='F')
            else:
                raise TypeError(
                    'init_score must be list, numpy 1-D array or pandas Series.\n'
                    'In multiclass classification init_score can also be a list of lists, numpy 2-D array or pandas DataFrame.'
                )
        else:
2591
            dtype = np.int32 if (field_name == 'group' or field_name == 'position') else np.float32
2592
            data = _list_to_1d_numpy(data, dtype=dtype, name=field_name)
2593

2594
        ptr_data: Union[_ctypes_float_ptr, _ctypes_int_ptr]
2595
        if data.dtype == np.float32 or data.dtype == np.float64:
2596
            ptr_data, type_data, _ = _c_float_array(data)
wxchan's avatar
wxchan committed
2597
        elif data.dtype == np.int32:
2598
            ptr_data, type_data, _ = _c_int_array(data)
wxchan's avatar
wxchan committed
2599
        else:
2600
            raise TypeError(f"Expected np.float32/64 or np.int32, met type({data.dtype})")
2601
        if type_data != _FIELD_TYPE_MAPPER[field_name]:
2602
            raise TypeError("Input type error for set_field")
wxchan's avatar
wxchan committed
2603
        _safe_call(_LIB.LGBM_DatasetSetField(
2604
            self._handle,
2605
            _c_str(field_name),
wxchan's avatar
wxchan committed
2606
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
2607
2608
            ctypes.c_int(len(data)),
            ctypes.c_int(type_data)))
2609
        self.version += 1
Nikita Titov's avatar
Nikita Titov committed
2610
        return self
wxchan's avatar
wxchan committed
2611

2612
    def get_field(self, field_name: str) -> Optional[np.ndarray]:
wxchan's avatar
wxchan committed
2613
        """Get property from the Dataset.
wxchan's avatar
wxchan committed
2614

2615
2616
2617
2618
2619
2620
        Can only be run on a constructed Dataset.

        Unlike ``get_group()``, ``get_init_score()``, ``get_label()``, ``get_position()``, and ``get_weight()``,
        this method ignores any raw data passed into ``lgb.Dataset()`` on the Python side, and will only read
        data from the constructed C++ ``Dataset`` object.

wxchan's avatar
wxchan committed
2621
2622
        Parameters
        ----------
2623
        field_name : str
2624
            The field name of the information.
wxchan's avatar
wxchan committed
2625
2626
2627

        Returns
        -------
2628
        info : numpy array or None
2629
            A numpy array with information from the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2630
        """
2631
        if self._handle is None:
2632
            raise Exception(f"Cannot get {field_name} before construct Dataset")
2633
2634
        tmp_out_len = ctypes.c_int(0)
        out_type = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2635
2636
        ret = ctypes.POINTER(ctypes.c_void_p)()
        _safe_call(_LIB.LGBM_DatasetGetField(
2637
            self._handle,
2638
            _c_str(field_name),
wxchan's avatar
wxchan committed
2639
2640
2641
            ctypes.byref(tmp_out_len),
            ctypes.byref(ret),
            ctypes.byref(out_type)))
2642
        if out_type.value != _FIELD_TYPE_MAPPER[field_name]:
wxchan's avatar
wxchan committed
2643
2644
2645
            raise TypeError("Return type error for get_field")
        if tmp_out_len.value == 0:
            return None
2646
        if out_type.value == _C_API_DTYPE_INT32:
2647
2648
2649
2650
            arr = _cint32_array_to_numpy(
                cptr=ctypes.cast(ret, ctypes.POINTER(ctypes.c_int32)),
                length=tmp_out_len.value
            )
2651
        elif out_type.value == _C_API_DTYPE_FLOAT32:
2652
2653
2654
2655
            arr = _cfloat32_array_to_numpy(
                cptr=ctypes.cast(ret, ctypes.POINTER(ctypes.c_float)),
                length=tmp_out_len.value
            )
2656
        elif out_type.value == _C_API_DTYPE_FLOAT64:
2657
2658
2659
2660
            arr = _cfloat64_array_to_numpy(
                cptr=ctypes.cast(ret, ctypes.POINTER(ctypes.c_double)),
                length=tmp_out_len.value
            )
2661
        else:
wxchan's avatar
wxchan committed
2662
            raise TypeError("Unknown type")
2663
2664
2665
2666
2667
2668
        if field_name == 'init_score':
            num_data = self.num_data()
            num_classes = arr.size // num_data
            if num_classes > 1:
                arr = arr.reshape((num_data, num_classes), order='F')
        return arr
Guolin Ke's avatar
Guolin Ke committed
2669

2670
2671
    def set_categorical_feature(
        self,
2672
        categorical_feature: _LGBM_CategoricalFeatureConfiguration
2673
    ) -> "Dataset":
2674
        """Set categorical features.
2675
2676
2677

        Parameters
        ----------
2678
        categorical_feature : list of str or int, or 'auto'
2679
            Names or indices of categorical features.
Nikita Titov's avatar
Nikita Titov committed
2680
2681
2682
2683
2684

        Returns
        -------
        self : Dataset
            Dataset with set categorical features.
2685
2686
        """
        if self.categorical_feature == categorical_feature:
Nikita Titov's avatar
Nikita Titov committed
2687
            return self
2688
        if self.data is not None:
2689
2690
            if self.categorical_feature is None:
                self.categorical_feature = categorical_feature
Nikita Titov's avatar
Nikita Titov committed
2691
                return self._free_handle()
2692
            elif categorical_feature == 'auto':
Nikita Titov's avatar
Nikita Titov committed
2693
                return self
2694
            else:
2695
2696
                if self.categorical_feature != 'auto':
                    _log_warning('categorical_feature in Dataset is overridden.\n'
2697
                                 f'New categorical_feature is {list(categorical_feature)}')
2698
                self.categorical_feature = categorical_feature
Nikita Titov's avatar
Nikita Titov committed
2699
                return self._free_handle()
2700
        else:
2701
2702
            raise LightGBMError("Cannot set categorical feature after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
2703

2704
2705
2706
2707
    def _set_predictor(
        self,
        predictor: Optional[_InnerPredictor]
    ) -> "Dataset":
2708
2709
2710
2711
        """Set predictor for continued training.

        It is not recommended for user to call this function.
        Please use init_model argument in engine.train() or engine.cv() instead.
Guolin Ke's avatar
Guolin Ke committed
2712
        """
2713
        if predictor is None and self._predictor is None:
Nikita Titov's avatar
Nikita Titov committed
2714
            return self
2715
2716
2717
        elif isinstance(predictor, _InnerPredictor) and isinstance(self._predictor, _InnerPredictor):
            if (predictor == self._predictor) and (predictor.current_iteration() == self._predictor.current_iteration()):
                return self
2718
        if self._handle is None:
Guolin Ke's avatar
Guolin Ke committed
2719
            self._predictor = predictor
2720
2721
        elif self.data is not None:
            self._predictor = predictor
2722
2723
2724
2725
2726
            self._set_init_score_by_predictor(
                predictor=self._predictor,
                data=self.data,
                used_indices=None
            )
2727
2728
        elif self.used_indices is not None and self.reference is not None and self.reference.data is not None:
            self._predictor = predictor
2729
2730
2731
2732
2733
            self._set_init_score_by_predictor(
                predictor=self._predictor,
                data=self.reference.data,
                used_indices=self.used_indices
            )
Guolin Ke's avatar
Guolin Ke committed
2734
        else:
2735
2736
            raise LightGBMError("Cannot set predictor after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
2737
        return self
Guolin Ke's avatar
Guolin Ke committed
2738

2739
    def set_reference(self, reference: "Dataset") -> "Dataset":
2740
        """Set reference Dataset.
Guolin Ke's avatar
Guolin Ke committed
2741
2742
2743
2744

        Parameters
        ----------
        reference : Dataset
2745
            Reference that is used as a template to construct the current Dataset.
Nikita Titov's avatar
Nikita Titov committed
2746
2747
2748
2749
2750

        Returns
        -------
        self : Dataset
            Dataset with set reference.
Guolin Ke's avatar
Guolin Ke committed
2751
        """
2752
2753
2754
        self.set_categorical_feature(reference.categorical_feature) \
            .set_feature_name(reference.feature_name) \
            ._set_predictor(reference._predictor)
2755
        # we're done if self and reference share a common upstream reference
2756
        if self.get_ref_chain().intersection(reference.get_ref_chain()):
Nikita Titov's avatar
Nikita Titov committed
2757
            return self
Guolin Ke's avatar
Guolin Ke committed
2758
2759
        if self.data is not None:
            self.reference = reference
Nikita Titov's avatar
Nikita Titov committed
2760
            return self._free_handle()
Guolin Ke's avatar
Guolin Ke committed
2761
        else:
2762
2763
            raise LightGBMError("Cannot set reference after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
Guolin Ke's avatar
Guolin Ke committed
2764

2765
    def set_feature_name(self, feature_name: _LGBM_FeatureNameConfiguration) -> "Dataset":
2766
        """Set feature name.
Guolin Ke's avatar
Guolin Ke committed
2767
2768
2769

        Parameters
        ----------
2770
        feature_name : list of str
2771
            Feature names.
Nikita Titov's avatar
Nikita Titov committed
2772
2773
2774
2775
2776

        Returns
        -------
        self : Dataset
            Dataset with set feature name.
Guolin Ke's avatar
Guolin Ke committed
2777
        """
2778
2779
        if feature_name != 'auto':
            self.feature_name = feature_name
2780
        if self._handle is not None and feature_name is not None and feature_name != 'auto':
wxchan's avatar
wxchan committed
2781
            if len(feature_name) != self.num_feature():
2782
                raise ValueError(f"Length of feature_name({len(feature_name)}) and num_feature({self.num_feature()}) don't match")
2783
            c_feature_name = [_c_str(name) for name in feature_name]
wxchan's avatar
wxchan committed
2784
            _safe_call(_LIB.LGBM_DatasetSetFeatureNames(
2785
                self._handle,
2786
                _c_array(ctypes.c_char_p, c_feature_name),
Guolin Ke's avatar
Guolin Ke committed
2787
                ctypes.c_int(len(feature_name))))
Nikita Titov's avatar
Nikita Titov committed
2788
        return self
Guolin Ke's avatar
Guolin Ke committed
2789

2790
    def set_label(self, label: Optional[_LGBM_LabelType]) -> "Dataset":
2791
        """Set label of Dataset.
Guolin Ke's avatar
Guolin Ke committed
2792
2793
2794

        Parameters
        ----------
2795
        label : list, numpy 1-D array, pandas Series / one-column DataFrame, pyarrow Array, pyarrow ChunkedArray or None
2796
            The label information to be set into Dataset.
Nikita Titov's avatar
Nikita Titov committed
2797
2798
2799
2800
2801

        Returns
        -------
        self : Dataset
            Dataset with set label.
Guolin Ke's avatar
Guolin Ke committed
2802
2803
        """
        self.label = label
2804
        if self._handle is not None:
2805
2806
2807
2808
            if isinstance(label, pd_DataFrame):
                if len(label.columns) > 1:
                    raise ValueError('DataFrame for label cannot have multiple columns')
                _check_for_bad_pandas_dtypes(label.dtypes)
2809
2810
2811
2812
2813
2814
2815
2816
2817
2818
2819
                try:
                    # most common case (no nullable dtypes)
                    label = label.to_numpy(dtype=np.float32, copy=False)
                except TypeError:
                    # 1.0 <= pd version < 1.1 and nullable dtypes, least common case
                    # raises error because array is casted to type(pd.NA) and there's no na_value argument
                    label = label.astype(np.float32, copy=False).values
                except ValueError:
                    # data has nullable dtypes, but we can specify na_value argument and copy will be made
                    label = label.to_numpy(dtype=np.float32, na_value=np.nan)
                label_array = np.ravel(label)
2820
2821
            elif _is_pyarrow_array(label):
                label_array = label
2822
            else:
2823
                label_array = _list_to_1d_numpy(label, dtype=np.float32, name='label')
2824
            self.set_field('label', label_array)
2825
            self.label = self.get_field('label')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
2826
        return self
Guolin Ke's avatar
Guolin Ke committed
2827

2828
2829
2830
2831
    def set_weight(
        self,
        weight: Optional[_LGBM_WeightType]
    ) -> "Dataset":
2832
        """Set weight of each instance.
Guolin Ke's avatar
Guolin Ke committed
2833
2834
2835

        Parameters
        ----------
2836
        weight : list, numpy 1-D array, pandas Series, pyarrow Array, pyarrow ChunkedArray or None
2837
            Weight to be set for each data point. Weights should be non-negative.
Nikita Titov's avatar
Nikita Titov committed
2838
2839
2840
2841
2842

        Returns
        -------
        self : Dataset
            Dataset with set weight.
Guolin Ke's avatar
Guolin Ke committed
2843
        """
2844
2845
2846
2847
2848
2849
2850
        # Check if the weight contains values other than one
        if weight is not None:
            if _is_pyarrow_array(weight):
                if pa_compute.all(pa_compute.equal(weight, 1)).as_py():
                    weight = None
            elif np.all(weight == 1):
                weight = None
Guolin Ke's avatar
Guolin Ke committed
2851
        self.weight = weight
2852
2853

        # Set field
2854
        if self._handle is not None and weight is not None:
2855
2856
            if not _is_pyarrow_array(weight):
                weight = _list_to_1d_numpy(weight, dtype=np.float32, name='weight')
wxchan's avatar
wxchan committed
2857
            self.set_field('weight', weight)
2858
            self.weight = self.get_field('weight')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
2859
        return self
Guolin Ke's avatar
Guolin Ke committed
2860

2861
2862
2863
2864
    def set_init_score(
        self,
        init_score: Optional[_LGBM_InitScoreType]
    ) -> "Dataset":
2865
        """Set init score of Booster to start from.
Guolin Ke's avatar
Guolin Ke committed
2866
2867
2868

        Parameters
        ----------
2869
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None
2870
            Init score for Booster.
Nikita Titov's avatar
Nikita Titov committed
2871
2872
2873
2874
2875

        Returns
        -------
        self : Dataset
            Dataset with set init score.
Guolin Ke's avatar
Guolin Ke committed
2876
2877
        """
        self.init_score = init_score
2878
        if self._handle is not None and init_score is not None:
wxchan's avatar
wxchan committed
2879
            self.set_field('init_score', init_score)
2880
            self.init_score = self.get_field('init_score')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
2881
        return self
Guolin Ke's avatar
Guolin Ke committed
2882

2883
2884
2885
2886
    def set_group(
        self,
        group: Optional[_LGBM_GroupType]
    ) -> "Dataset":
2887
        """Set group size of Dataset (used for ranking).
Guolin Ke's avatar
Guolin Ke committed
2888
2889
2890

        Parameters
        ----------
2891
        group : list, numpy 1-D array, pandas Series or None
2892
2893
2894
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
2895
2896
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
Nikita Titov's avatar
Nikita Titov committed
2897
2898
2899
2900
2901

        Returns
        -------
        self : Dataset
            Dataset with set group.
Guolin Ke's avatar
Guolin Ke committed
2902
2903
        """
        self.group = group
2904
        if self._handle is not None and group is not None:
2905
            group = _list_to_1d_numpy(group, dtype=np.int32, name='group')
wxchan's avatar
wxchan committed
2906
            self.set_field('group', group)
2907
2908
2909
2910
            # original values can be modified at cpp side
            constructed_group = self.get_field('group')
            if constructed_group is not None:
                self.group = np.diff(constructed_group)
Nikita Titov's avatar
Nikita Titov committed
2911
        return self
Guolin Ke's avatar
Guolin Ke committed
2912

2913
2914
2915
2916
2917
2918
2919
2920
2921
2922
2923
2924
2925
2926
2927
2928
2929
2930
2931
2932
2933
2934
    def set_position(
        self,
        position: Optional[_LGBM_PositionType]
    ) -> "Dataset":
        """Set position of Dataset (used for ranking).

        Parameters
        ----------
        position : numpy 1-D array, pandas Series or None, optional (default=None)
            Position of items used in unbiased learning-to-rank task.

        Returns
        -------
        self : Dataset
            Dataset with set position.
        """
        self.position = position
        if self._handle is not None and position is not None:
            position = _list_to_1d_numpy(position, dtype=np.int32, name='position')
            self.set_field('position', position)
        return self

2935
    def get_feature_name(self) -> List[str]:
2936
2937
2938
2939
        """Get the names of columns (features) in the Dataset.

        Returns
        -------
2940
        feature_names : list of str
2941
2942
            The names of columns (features) in the Dataset.
        """
2943
        if self._handle is None:
2944
2945
2946
2947
2948
            raise LightGBMError("Cannot get feature_name before construct dataset")
        num_feature = self.num_feature()
        tmp_out_len = ctypes.c_int(0)
        reserved_string_buffer_size = 255
        required_string_buffer_size = ctypes.c_size_t(0)
2949
        string_buffers = [ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(num_feature)]
2950
2951
        ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
        _safe_call(_LIB.LGBM_DatasetGetFeatureNames(
2952
            self._handle,
2953
            ctypes.c_int(num_feature),
2954
            ctypes.byref(tmp_out_len),
2955
            ctypes.c_size_t(reserved_string_buffer_size),
2956
2957
2958
2959
            ctypes.byref(required_string_buffer_size),
            ptr_string_buffers))
        if num_feature != tmp_out_len.value:
            raise ValueError("Length of feature names doesn't equal with num_feature")
2960
2961
2962
2963
2964
2965
        actual_string_buffer_size = required_string_buffer_size.value
        # if buffer length is not long enough, reallocate buffers
        if reserved_string_buffer_size < actual_string_buffer_size:
            string_buffers = [ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(num_feature)]
            ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
            _safe_call(_LIB.LGBM_DatasetGetFeatureNames(
2966
                self._handle,
2967
2968
2969
2970
2971
                ctypes.c_int(num_feature),
                ctypes.byref(tmp_out_len),
                ctypes.c_size_t(actual_string_buffer_size),
                ctypes.byref(required_string_buffer_size),
                ptr_string_buffers))
2972
        return [string_buffers[i].value.decode('utf-8') for i in range(num_feature)]
2973

2974
    def get_label(self) -> Optional[_LGBM_LabelType]:
2975
        """Get the label of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2976
2977
2978

        Returns
        -------
2979
        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None
2980
            The label information from the Dataset.
2981
            For a constructed ``Dataset``, this will only return a numpy array.
Guolin Ke's avatar
Guolin Ke committed
2982
        """
2983
        if self.label is None:
wxchan's avatar
wxchan committed
2984
            self.label = self.get_field('label')
Guolin Ke's avatar
Guolin Ke committed
2985
2986
        return self.label

2987
    def get_weight(self) -> Optional[_LGBM_WeightType]:
2988
        """Get the weight of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2989
2990
2991

        Returns
        -------
2992
        weight : list, numpy 1-D array, pandas Series or None
2993
            Weight for each data point from the Dataset. Weights should be non-negative.
2994
            For a constructed ``Dataset``, this will only return ``None`` or a numpy array.
Guolin Ke's avatar
Guolin Ke committed
2995
        """
2996
        if self.weight is None:
wxchan's avatar
wxchan committed
2997
            self.weight = self.get_field('weight')
Guolin Ke's avatar
Guolin Ke committed
2998
2999
        return self.weight

3000
    def get_init_score(self) -> Optional[_LGBM_InitScoreType]:
3001
        """Get the initial score of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
3002
3003
3004

        Returns
        -------
3005
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None
3006
            Init score of Booster.
3007
            For a constructed ``Dataset``, this will only return ``None`` or a numpy array.
Guolin Ke's avatar
Guolin Ke committed
3008
        """
3009
        if self.init_score is None:
wxchan's avatar
wxchan committed
3010
            self.init_score = self.get_field('init_score')
Guolin Ke's avatar
Guolin Ke committed
3011
3012
        return self.init_score

3013
    def get_data(self) -> Optional[_LGBM_TrainDataType]:
3014
3015
3016
3017
        """Get the raw data of the Dataset.

        Returns
        -------
3018
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array or None
3019
3020
            Raw data used in the Dataset construction.
        """
3021
        if self._handle is None:
3022
            raise Exception("Cannot get data before construct Dataset")
3023
        if self._need_slice and self.used_indices is not None and self.reference is not None:
Guolin Ke's avatar
Guolin Ke committed
3024
3025
            self.data = self.reference.data
            if self.data is not None:
3026
                if isinstance(self.data, np.ndarray) or isinstance(self.data, scipy.sparse.spmatrix):
Guolin Ke's avatar
Guolin Ke committed
3027
                    self.data = self.data[self.used_indices, :]
3028
                elif isinstance(self.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
3029
                    self.data = self.data.iloc[self.used_indices].copy()
3030
                elif isinstance(self.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
3031
                    self.data = self.data[self.used_indices, :]
3032
3033
                elif isinstance(self.data, Sequence):
                    self.data = self.data[self.used_indices]
3034
                elif _is_list_of_sequences(self.data) and len(self.data) > 0:
3035
                    self.data = np.array(list(self._yield_row_from_seqlist(self.data, self.used_indices)))
Guolin Ke's avatar
Guolin Ke committed
3036
                else:
3037
3038
                    _log_warning(f"Cannot subset {type(self.data).__name__} type of raw data.\n"
                                 "Returning original raw data")
3039
            self._need_slice = False
Guolin Ke's avatar
Guolin Ke committed
3040
3041
3042
        if self.data is None:
            raise LightGBMError("Cannot call `get_data` after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
3043
3044
        return self.data

3045
    def get_group(self) -> Optional[_LGBM_GroupType]:
3046
        """Get the group of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
3047
3048
3049

        Returns
        -------
3050
        group : list, numpy 1-D array, pandas Series or None
3051
3052
3053
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
3054
3055
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
3056
            For a constructed ``Dataset``, this will only return ``None`` or a numpy array.
Guolin Ke's avatar
Guolin Ke committed
3057
        """
3058
        if self.group is None:
wxchan's avatar
wxchan committed
3059
            self.group = self.get_field('group')
Guolin Ke's avatar
Guolin Ke committed
3060
3061
            if self.group is not None:
                # group data from LightGBM is boundaries data, need to convert to group size
Nikita Titov's avatar
Nikita Titov committed
3062
                self.group = np.diff(self.group)
Guolin Ke's avatar
Guolin Ke committed
3063
3064
        return self.group

3065
    def get_position(self) -> Optional[_LGBM_PositionType]:
3066
3067
3068
3069
        """Get the position of the Dataset.

        Returns
        -------
3070
        position : numpy 1-D array, pandas Series or None
3071
            Position of items used in unbiased learning-to-rank task.
3072
            For a constructed ``Dataset``, this will only return ``None`` or a numpy array.
3073
3074
3075
3076
3077
        """
        if self.position is None:
            self.position = self.get_field('position')
        return self.position

3078
    def num_data(self) -> int:
3079
        """Get the number of rows in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
3080
3081
3082

        Returns
        -------
3083
3084
        number_of_rows : int
            The number of rows in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
3085
        """
3086
        if self._handle is not None:
3087
            ret = ctypes.c_int(0)
3088
            _safe_call(_LIB.LGBM_DatasetGetNumData(self._handle,
wxchan's avatar
wxchan committed
3089
3090
                                                   ctypes.byref(ret)))
            return ret.value
Guolin Ke's avatar
Guolin Ke committed
3091
        else:
3092
            raise LightGBMError("Cannot get num_data before construct dataset")
Guolin Ke's avatar
Guolin Ke committed
3093

3094
    def num_feature(self) -> int:
3095
        """Get the number of columns (features) in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
3096
3097
3098

        Returns
        -------
3099
3100
        number_of_columns : int
            The number of columns (features) in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
3101
        """
3102
        if self._handle is not None:
3103
            ret = ctypes.c_int(0)
3104
            _safe_call(_LIB.LGBM_DatasetGetNumFeature(self._handle,
wxchan's avatar
wxchan committed
3105
3106
                                                      ctypes.byref(ret)))
            return ret.value
Guolin Ke's avatar
Guolin Ke committed
3107
        else:
3108
            raise LightGBMError("Cannot get num_feature before construct dataset")
Guolin Ke's avatar
Guolin Ke committed
3109

3110
    def feature_num_bin(self, feature: Union[int, str]) -> int:
3111
3112
        """Get the number of bins for a feature.

3113
3114
        .. versionadded:: 4.0.0

3115
3116
        Parameters
        ----------
3117
3118
        feature : int or str
            Index or name of the feature.
3119
3120
3121
3122
3123
3124

        Returns
        -------
        number_of_bins : int
            The number of constructed bins for the feature in the Dataset.
        """
3125
        if self._handle is not None:
3126
            if isinstance(feature, str):
3127
3128
3129
                feature_index = self.feature_name.index(feature)
            else:
                feature_index = feature
3130
            ret = ctypes.c_int(0)
3131
            _safe_call(_LIB.LGBM_DatasetGetFeatureNumBin(self._handle,
3132
                                                         ctypes.c_int(feature_index),
3133
3134
3135
3136
3137
                                                         ctypes.byref(ret)))
            return ret.value
        else:
            raise LightGBMError("Cannot get feature_num_bin before construct dataset")

3138
    def get_ref_chain(self, ref_limit: int = 100) -> Set["Dataset"]:
3139
3140
3141
3142
3143
        """Get a chain of Dataset objects.

        Starts with r, then goes to r.reference (if exists),
        then to r.reference.reference, etc.
        until we hit ``ref_limit`` or a reference loop.
3144
3145
3146
3147
3148

        Parameters
        ----------
        ref_limit : int, optional (default=100)
            The limit number of references.
3149
3150
3151

        Returns
        -------
3152
3153
3154
        ref_chain : set of Dataset
            Chain of references of the Datasets.
        """
3155
        head = self
3156
        ref_chain: Set[Dataset] = set()
3157
3158
        while len(ref_chain) < ref_limit:
            if isinstance(head, Dataset):
3159
                ref_chain.add(head)
3160
3161
3162
3163
3164
3165
                if (head.reference is not None) and (head.reference not in ref_chain):
                    head = head.reference
                else:
                    break
            else:
                break
Nikita Titov's avatar
Nikita Titov committed
3166
        return ref_chain
3167

3168
    def add_features_from(self, other: "Dataset") -> "Dataset":
3169
3170
3171
3172
3173
3174
3175
3176
3177
3178
3179
3180
3181
3182
        """Add features from other Dataset to the current Dataset.

        Both Datasets must be constructed before calling this method.

        Parameters
        ----------
        other : Dataset
            The Dataset to take features from.

        Returns
        -------
        self : Dataset
            Dataset with the new features added.
        """
3183
        if self._handle is None or other._handle is None:
3184
            raise ValueError('Both source and target Datasets must be constructed before adding features')
3185
        _safe_call(_LIB.LGBM_DatasetAddFeaturesFrom(self._handle, other._handle))
Guolin Ke's avatar
Guolin Ke committed
3186
3187
3188
3189
3190
3191
3192
3193
        was_none = self.data is None
        old_self_data_type = type(self.data).__name__
        if other.data is None:
            self.data = None
        elif self.data is not None:
            if isinstance(self.data, np.ndarray):
                if isinstance(other.data, np.ndarray):
                    self.data = np.hstack((self.data, other.data))
3194
                elif isinstance(other.data, scipy.sparse.spmatrix):
Guolin Ke's avatar
Guolin Ke committed
3195
                    self.data = np.hstack((self.data, other.data.toarray()))
3196
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
3197
                    self.data = np.hstack((self.data, other.data.values))
3198
                elif isinstance(other.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
3199
3200
3201
                    self.data = np.hstack((self.data, other.data.to_numpy()))
                else:
                    self.data = None
3202
            elif isinstance(self.data, scipy.sparse.spmatrix):
Guolin Ke's avatar
Guolin Ke committed
3203
                sparse_format = self.data.getformat()
3204
                if isinstance(other.data, np.ndarray) or isinstance(other.data, scipy.sparse.spmatrix):
Guolin Ke's avatar
Guolin Ke committed
3205
                    self.data = scipy.sparse.hstack((self.data, other.data), format=sparse_format)
3206
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
3207
                    self.data = scipy.sparse.hstack((self.data, other.data.values), format=sparse_format)
3208
                elif isinstance(other.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
3209
3210
3211
                    self.data = scipy.sparse.hstack((self.data, other.data.to_numpy()), format=sparse_format)
                else:
                    self.data = None
3212
            elif isinstance(self.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
3213
3214
                if not PANDAS_INSTALLED:
                    raise LightGBMError("Cannot add features to DataFrame type of raw data "
3215
3216
                                        "without pandas installed. "
                                        "Install pandas and restart your session.")
Guolin Ke's avatar
Guolin Ke committed
3217
                if isinstance(other.data, np.ndarray):
3218
                    self.data = concat((self.data, pd_DataFrame(other.data)),
Guolin Ke's avatar
Guolin Ke committed
3219
                                       axis=1, ignore_index=True)
3220
                elif isinstance(other.data, scipy.sparse.spmatrix):
3221
                    self.data = concat((self.data, pd_DataFrame(other.data.toarray())),
Guolin Ke's avatar
Guolin Ke committed
3222
                                       axis=1, ignore_index=True)
3223
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
3224
3225
                    self.data = concat((self.data, other.data),
                                       axis=1, ignore_index=True)
3226
3227
                elif isinstance(other.data, dt_DataTable):
                    self.data = concat((self.data, pd_DataFrame(other.data.to_numpy())),
Guolin Ke's avatar
Guolin Ke committed
3228
3229
3230
                                       axis=1, ignore_index=True)
                else:
                    self.data = None
3231
            elif isinstance(self.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
3232
                if isinstance(other.data, np.ndarray):
3233
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data)))
3234
                elif isinstance(other.data, scipy.sparse.spmatrix):
3235
3236
3237
3238
3239
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.toarray())))
                elif isinstance(other.data, pd_DataFrame):
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.values)))
                elif isinstance(other.data, dt_DataTable):
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.to_numpy())))
Guolin Ke's avatar
Guolin Ke committed
3240
3241
3242
3243
3244
                else:
                    self.data = None
            else:
                self.data = None
        if self.data is None:
3245
3246
            err_msg = (f"Cannot add features from {type(other.data).__name__} type of raw data to "
                       f"{old_self_data_type} type of raw data.\n")
Guolin Ke's avatar
Guolin Ke committed
3247
3248
            err_msg += ("Set free_raw_data=False when construct Dataset to avoid this"
                        if was_none else "Freeing raw data")
3249
            _log_warning(err_msg)
Guolin Ke's avatar
Guolin Ke committed
3250
        self.feature_name = self.get_feature_name()
3251
3252
        _log_warning("Reseting categorical features.\n"
                     "You can set new categorical features via ``set_categorical_feature`` method")
Guolin Ke's avatar
Guolin Ke committed
3253
3254
        self.categorical_feature = "auto"
        self.pandas_categorical = None
3255
3256
        return self

3257
    def _dump_text(self, filename: Union[str, Path]) -> "Dataset":
3258
3259
3260
3261
3262
3263
        """Save Dataset to a text file.

        This format cannot be loaded back in by LightGBM, but is useful for debugging purposes.

        Parameters
        ----------
3264
        filename : str or pathlib.Path
3265
3266
3267
3268
3269
3270
3271
3272
            Name of the output file.

        Returns
        -------
        self : Dataset
            Returns self.
        """
        _safe_call(_LIB.LGBM_DatasetDumpText(
3273
            self.construct()._handle,
3274
            _c_str(str(filename))))
3275
3276
        return self

wxchan's avatar
wxchan committed
3277

3278
3279
3280
3281
_LGBM_CustomObjectiveFunction = Callable[
    [np.ndarray, Dataset],
    Tuple[np.ndarray, np.ndarray]
]
3282
3283
3284
3285
3286
3287
3288
3289
3290
3291
_LGBM_CustomEvalFunction = Union[
    Callable[
        [np.ndarray, Dataset],
        _LGBM_EvalFunctionResultType
    ],
    Callable[
        [np.ndarray, Dataset],
        List[_LGBM_EvalFunctionResultType]
    ]
]
3292
3293


3294
class Booster:
3295
    """Booster in LightGBM."""
3296

3297
3298
3299
3300
3301
3302
3303
    def __init__(
        self,
        params: Optional[Dict[str, Any]] = None,
        train_set: Optional[Dataset] = None,
        model_file: Optional[Union[str, Path]] = None,
        model_str: Optional[str] = None
    ):
3304
        """Initialize the Booster.
wxchan's avatar
wxchan committed
3305
3306
3307

        Parameters
        ----------
Nikita Titov's avatar
Nikita Titov committed
3308
        params : dict or None, optional (default=None)
3309
3310
3311
            Parameters for Booster.
        train_set : Dataset or None, optional (default=None)
            Training dataset.
3312
        model_file : str, pathlib.Path or None, optional (default=None)
wxchan's avatar
wxchan committed
3313
            Path to the model file.
3314
        model_str : str or None, optional (default=None)
3315
            Model will be loaded from this string.
wxchan's avatar
wxchan committed
3316
        """
3317
        self._handle = ctypes.c_void_p()
3318
        self._network = False
wxchan's avatar
wxchan committed
3319
        self.__need_reload_eval_info = True
3320
        self._train_data_name = "training"
3321
        self.__set_objective_to_none = False
wxchan's avatar
wxchan committed
3322
        self.best_iteration = -1
3323
        self.best_score: _LGBM_BoosterBestScoreType = {}
3324
        params = {} if params is None else deepcopy(params)
wxchan's avatar
wxchan committed
3325
        if train_set is not None:
3326
            # Training task
wxchan's avatar
wxchan committed
3327
            if not isinstance(train_set, Dataset):
3328
                raise TypeError(f'Training data should be Dataset instance, met {type(train_set).__name__}')
3329
3330
3331
3332
3333
3334
3335
3336
3337
3338
3339
3340
3341
3342
3343
3344
3345
3346
3347
3348
3349
3350
3351
3352
3353
3354
3355
3356
3357
3358
3359
3360
3361
3362
            params = _choose_param_value(
                main_param_name="machines",
                params=params,
                default_value=None
            )
            # if "machines" is given, assume user wants to do distributed learning, and set up network
            if params["machines"] is None:
                params.pop("machines", None)
            else:
                machines = params["machines"]
                if isinstance(machines, str):
                    num_machines_from_machine_list = len(machines.split(','))
                elif isinstance(machines, (list, set)):
                    num_machines_from_machine_list = len(machines)
                    machines = ','.join(machines)
                else:
                    raise ValueError("Invalid machines in params.")

                params = _choose_param_value(
                    main_param_name="num_machines",
                    params=params,
                    default_value=num_machines_from_machine_list
                )
                params = _choose_param_value(
                    main_param_name="local_listen_port",
                    params=params,
                    default_value=12400
                )
                self.set_network(
                    machines=machines,
                    local_listen_port=params["local_listen_port"],
                    listen_time_out=params.get("time_out", 120),
                    num_machines=params["num_machines"]
                )
3363
            # construct booster object
3364
3365
3366
            train_set.construct()
            # copy the parameters from train_set
            params.update(train_set.get_params())
3367
            params_str = _param_dict_to_str(params)
wxchan's avatar
wxchan committed
3368
            _safe_call(_LIB.LGBM_BoosterCreate(
3369
                train_set._handle,
3370
                _c_str(params_str),
3371
                ctypes.byref(self._handle)))
3372
            # save reference to data
wxchan's avatar
wxchan committed
3373
            self.train_set = train_set
3374
3375
            self.valid_sets: List[Dataset] = []
            self.name_valid_sets: List[str] = []
wxchan's avatar
wxchan committed
3376
            self.__num_dataset = 1
Guolin Ke's avatar
Guolin Ke committed
3377
3378
            self.__init_predictor = train_set._predictor
            if self.__init_predictor is not None:
wxchan's avatar
wxchan committed
3379
                _safe_call(_LIB.LGBM_BoosterMerge(
3380
3381
                    self._handle,
                    self.__init_predictor._handle))
Guolin Ke's avatar
Guolin Ke committed
3382
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
3383
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
3384
                self._handle,
wxchan's avatar
wxchan committed
3385
3386
                ctypes.byref(out_num_class)))
            self.__num_class = out_num_class.value
3387
            # buffer for inner predict
3388
            self.__inner_predict_buffer: List[Optional[np.ndarray]] = [None]
wxchan's avatar
wxchan committed
3389
3390
            self.__is_predicted_cur_iter = [False]
            self.__get_eval_info()
3391
            self.pandas_categorical = train_set.pandas_categorical
3392
            self.train_set_version = train_set.version
wxchan's avatar
wxchan committed
3393
        elif model_file is not None:
3394
            # Prediction task
Guolin Ke's avatar
Guolin Ke committed
3395
            out_num_iterations = ctypes.c_int(0)
wxchan's avatar
wxchan committed
3396
            _safe_call(_LIB.LGBM_BoosterCreateFromModelfile(
3397
                _c_str(str(model_file)),
wxchan's avatar
wxchan committed
3398
                ctypes.byref(out_num_iterations),
3399
                ctypes.byref(self._handle)))
Guolin Ke's avatar
Guolin Ke committed
3400
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
3401
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
3402
                self._handle,
wxchan's avatar
wxchan committed
3403
3404
                ctypes.byref(out_num_class)))
            self.__num_class = out_num_class.value
3405
            self.pandas_categorical = _load_pandas_categorical(file_name=model_file)
3406
3407
3408
            if params:
                _log_warning('Ignoring params argument, using parameters from model file.')
            params = self._get_loaded_param()
3409
        elif model_str is not None:
3410
            self.model_from_string(model_str)
wxchan's avatar
wxchan committed
3411
        else:
3412
3413
            raise TypeError('Need at least one training dataset or model file or model string '
                            'to create Booster instance')
3414
        self.params = params
wxchan's avatar
wxchan committed
3415

3416
    def __del__(self) -> None:
3417
        try:
3418
            if self._network:
3419
3420
3421
3422
                self.free_network()
        except AttributeError:
            pass
        try:
3423
3424
            if self._handle is not None:
                _safe_call(_LIB.LGBM_BoosterFree(self._handle))
3425
3426
        except AttributeError:
            pass
wxchan's avatar
wxchan committed
3427

3428
    def __copy__(self) -> "Booster":
wxchan's avatar
wxchan committed
3429
3430
        return self.__deepcopy__(None)

3431
    def __deepcopy__(self, _) -> "Booster":
3432
        model_str = self.model_to_string(num_iteration=-1)
3433
        return Booster(model_str=model_str)
wxchan's avatar
wxchan committed
3434

3435
    def __getstate__(self) -> Dict[str, Any]:
wxchan's avatar
wxchan committed
3436
        this = self.__dict__.copy()
3437
        handle = this['_handle']
wxchan's avatar
wxchan committed
3438
3439
3440
        this.pop('train_set', None)
        this.pop('valid_sets', None)
        if handle is not None:
3441
            this["_handle"] = self.model_to_string(num_iteration=-1)
wxchan's avatar
wxchan committed
3442
3443
        return this

3444
    def __setstate__(self, state: Dict[str, Any]) -> None:
3445
        model_str = state.get('_handle', state.get('handle', None))
3446
        if model_str is not None:
wxchan's avatar
wxchan committed
3447
            handle = ctypes.c_void_p()
Guolin Ke's avatar
Guolin Ke committed
3448
            out_num_iterations = ctypes.c_int(0)
3449
            _safe_call(_LIB.LGBM_BoosterLoadModelFromString(
3450
                _c_str(model_str),
3451
3452
                ctypes.byref(out_num_iterations),
                ctypes.byref(handle)))
3453
            state['_handle'] = handle
wxchan's avatar
wxchan committed
3454
3455
        self.__dict__.update(state)

3456
3457
3458
3459
    def _get_loaded_param(self) -> Dict[str, Any]:
        buffer_len = 1 << 20
        tmp_out_len = ctypes.c_int64(0)
        string_buffer = ctypes.create_string_buffer(buffer_len)
3460
        ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
3461
        _safe_call(_LIB.LGBM_BoosterGetLoadedParam(
3462
            self._handle,
3463
3464
3465
3466
3467
3468
3469
            ctypes.c_int64(buffer_len),
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
        # if buffer length is not long enough, re-allocate a buffer
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
3470
            ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
3471
            _safe_call(_LIB.LGBM_BoosterGetLoadedParam(
3472
                self._handle,
3473
3474
3475
3476
3477
                ctypes.c_int64(actual_len),
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
        return json.loads(string_buffer.value.decode('utf-8'))

3478
    def free_dataset(self) -> "Booster":
Nikita Titov's avatar
Nikita Titov committed
3479
3480
3481
3482
3483
3484
3485
        """Free Booster's Datasets.

        Returns
        -------
        self : Booster
            Booster without Datasets.
        """
wxchan's avatar
wxchan committed
3486
3487
        self.__dict__.pop('train_set', None)
        self.__dict__.pop('valid_sets', None)
3488
        self.__num_dataset = 0
Nikita Titov's avatar
Nikita Titov committed
3489
        return self
wxchan's avatar
wxchan committed
3490

3491
    def _free_buffer(self) -> "Booster":
3492
3493
        self.__inner_predict_buffer = []
        self.__is_predicted_cur_iter = []
Nikita Titov's avatar
Nikita Titov committed
3494
        return self
3495

3496
3497
3498
3499
3500
3501
3502
    def set_network(
        self,
        machines: Union[List[str], Set[str], str],
        local_listen_port: int = 12400,
        listen_time_out: int = 120,
        num_machines: int = 1
    ) -> "Booster":
3503
3504
3505
3506
        """Set the network configuration.

        Parameters
        ----------
3507
        machines : list, set or str
3508
            Names of machines.
Nikita Titov's avatar
Nikita Titov committed
3509
        local_listen_port : int, optional (default=12400)
3510
            TCP listen port for local machines.
Nikita Titov's avatar
Nikita Titov committed
3511
        listen_time_out : int, optional (default=120)
3512
            Socket time-out in minutes.
Nikita Titov's avatar
Nikita Titov committed
3513
        num_machines : int, optional (default=1)
3514
            The number of machines for distributed learning application.
Nikita Titov's avatar
Nikita Titov committed
3515
3516
3517
3518
3519

        Returns
        -------
        self : Booster
            Booster with set network.
3520
        """
3521
3522
        if isinstance(machines, (list, set)):
            machines = ','.join(machines)
3523
        _safe_call(_LIB.LGBM_NetworkInit(_c_str(machines),
3524
3525
3526
                                         ctypes.c_int(local_listen_port),
                                         ctypes.c_int(listen_time_out),
                                         ctypes.c_int(num_machines)))
3527
        self._network = True
Nikita Titov's avatar
Nikita Titov committed
3528
        return self
3529

3530
    def free_network(self) -> "Booster":
Nikita Titov's avatar
Nikita Titov committed
3531
3532
3533
3534
3535
3536
3537
        """Free Booster's network.

        Returns
        -------
        self : Booster
            Booster with freed network.
        """
3538
        _safe_call(_LIB.LGBM_NetworkFree())
3539
        self._network = False
Nikita Titov's avatar
Nikita Titov committed
3540
        return self
3541

3542
    def trees_to_dataframe(self) -> pd_DataFrame:
3543
3544
        """Parse the fitted model and return in an easy-to-read pandas DataFrame.

3545
3546
3547
3548
        The returned DataFrame has the following columns.

            - ``tree_index`` : int64, which tree a node belongs to. 0-based, so a value of ``6``, for example, means "this node is in the 7th tree".
            - ``node_depth`` : int64, how far a node is from the root of the tree. The root node has a value of ``1``, its direct children are ``2``, etc.
3549
3550
3551
3552
3553
            - ``node_index`` : str, unique identifier for a node.
            - ``left_child`` : str, ``node_index`` of the child node to the left of a split. ``None`` for leaf nodes.
            - ``right_child`` : str, ``node_index`` of the child node to the right of a split. ``None`` for leaf nodes.
            - ``parent_index`` : str, ``node_index`` of this node's parent. ``None`` for the root node.
            - ``split_feature`` : str, name of the feature used for splitting. ``None`` for leaf nodes.
3554
3555
            - ``split_gain`` : float64, gain from adding this split to the tree. ``NaN`` for leaf nodes.
            - ``threshold`` : float64, value of the feature used to decide which side of the split a record will go down. ``NaN`` for leaf nodes.
3556
            - ``decision_type`` : str, logical operator describing how to compare a value to ``threshold``.
3557
3558
              For example, ``split_feature = "Column_10", threshold = 15, decision_type = "<="`` means that
              records where ``Column_10 <= 15`` follow the left side of the split, otherwise follows the right side of the split. ``None`` for leaf nodes.
3559
3560
            - ``missing_direction`` : str, split direction that missing values should go to. ``None`` for leaf nodes.
            - ``missing_type`` : str, describes what types of values are treated as missing.
3561
            - ``value`` : float64, predicted value for this leaf node, multiplied by the learning rate.
3562
            - ``weight`` : float64 or int64, sum of Hessian (second-order derivative of objective), summed over observations that fall in this node.
3563
3564
            - ``count`` : int64, number of records in the training data that fall into this node.

3565
3566
3567
3568
3569
3570
        Returns
        -------
        result : pandas DataFrame
            Returns a pandas DataFrame of the parsed model.
        """
        if not PANDAS_INSTALLED:
3571
3572
            raise LightGBMError('This method cannot be run without pandas installed. '
                                'You must install pandas and restart your session to use this method.')
3573
3574
3575
3576

        if self.num_trees() == 0:
            raise LightGBMError('There are no trees in this Booster and thus nothing to parse')

3577
        def _is_split_node(tree: Dict[str, Any]) -> bool:
3578
3579
            return 'split_index' in tree.keys()

3580
3581
3582
3583
3584
3585
3586
3587
3588
3589
3590
3591
        def create_node_record(
            tree: Dict[str, Any],
            node_depth: int = 1,
            tree_index: Optional[int] = None,
            feature_names: Optional[List[str]] = None,
            parent_node: Optional[str] = None
        ) -> Dict[str, Any]:

            def _get_node_index(
                tree: Dict[str, Any],
                tree_index: Optional[int]
            ) -> str:
3592
                tree_num = f'{tree_index}-' if tree_index is not None else ''
3593
3594
3595
                is_split = _is_split_node(tree)
                node_type = 'S' if is_split else 'L'
                # if a single node tree it won't have `leaf_index` so return 0
3596
3597
                node_num = tree.get('split_index' if is_split else 'leaf_index', 0)
                return f"{tree_num}{node_type}{node_num}"
3598

3599
3600
3601
3602
            def _get_split_feature(
                tree: Dict[str, Any],
                feature_names: Optional[List[str]]
            ) -> Optional[str]:
3603
3604
3605
3606
3607
3608
3609
3610
3611
                if _is_split_node(tree):
                    if feature_names is not None:
                        feature_name = feature_names[tree['split_feature']]
                    else:
                        feature_name = tree['split_feature']
                else:
                    feature_name = None
                return feature_name

3612
            def _is_single_node_tree(tree: Dict[str, Any]) -> bool:
3613
                return set(tree.keys()) == {'leaf_value'}
3614
3615

            # Create the node record, and populate universal data members
3616
            node: Dict[str, Union[int, str, None]] = OrderedDict()
3617
3618
3619
3620
3621
3622
3623
3624
3625
3626
3627
3628
3629
3630
3631
3632
3633
3634
3635
3636
3637
3638
3639
3640
3641
3642
3643
3644
3645
3646
3647
3648
3649
3650
3651
3652
            node['tree_index'] = tree_index
            node['node_depth'] = node_depth
            node['node_index'] = _get_node_index(tree, tree_index)
            node['left_child'] = None
            node['right_child'] = None
            node['parent_index'] = parent_node
            node['split_feature'] = _get_split_feature(tree, feature_names)
            node['split_gain'] = None
            node['threshold'] = None
            node['decision_type'] = None
            node['missing_direction'] = None
            node['missing_type'] = None
            node['value'] = None
            node['weight'] = None
            node['count'] = None

            # Update values to reflect node type (leaf or split)
            if _is_split_node(tree):
                node['left_child'] = _get_node_index(tree['left_child'], tree_index)
                node['right_child'] = _get_node_index(tree['right_child'], tree_index)
                node['split_gain'] = tree['split_gain']
                node['threshold'] = tree['threshold']
                node['decision_type'] = tree['decision_type']
                node['missing_direction'] = 'left' if tree['default_left'] else 'right'
                node['missing_type'] = tree['missing_type']
                node['value'] = tree['internal_value']
                node['weight'] = tree['internal_weight']
                node['count'] = tree['internal_count']
            else:
                node['value'] = tree['leaf_value']
                if not _is_single_node_tree(tree):
                    node['weight'] = tree['leaf_weight']
                    node['count'] = tree['leaf_count']

            return node

3653
3654
3655
3656
3657
3658
3659
        def tree_dict_to_node_list(
            tree: Dict[str, Any],
            node_depth: int = 1,
            tree_index: Optional[int] = None,
            feature_names: Optional[List[str]] = None,
            parent_node: Optional[str] = None
        ) -> List[Dict[str, Any]]:
3660

3661
            node = create_node_record(tree=tree,
3662
3663
3664
3665
3666
3667
3668
3669
3670
3671
3672
3673
                                      node_depth=node_depth,
                                      tree_index=tree_index,
                                      feature_names=feature_names,
                                      parent_node=parent_node)

            res = [node]

            if _is_split_node(tree):
                # traverse the next level of the tree
                children = ['left_child', 'right_child']
                for child in children:
                    subtree_list = tree_dict_to_node_list(
3674
                        tree=tree[child],
3675
3676
3677
                        node_depth=node_depth + 1,
                        tree_index=tree_index,
                        feature_names=feature_names,
3678
3679
                        parent_node=node['node_index']
                    )
3680
3681
3682
3683
3684
3685
3686
3687
3688
                    # In tree format, "subtree_list" is a list of node records (dicts),
                    # and we add node to the list.
                    res.extend(subtree_list)
            return res

        model_dict = self.dump_model()
        feature_names = model_dict['feature_names']
        model_list = []
        for tree in model_dict['tree_info']:
3689
            model_list.extend(tree_dict_to_node_list(tree=tree['tree_structure'],
3690
3691
3692
                                                     tree_index=tree['tree_index'],
                                                     feature_names=feature_names))

3693
        return pd_DataFrame(model_list, columns=model_list[0].keys())
3694

3695
    def set_train_data_name(self, name: str) -> "Booster":
3696
3697
3698
3699
        """Set the name to the training Dataset.

        Parameters
        ----------
3700
        name : str
Nikita Titov's avatar
Nikita Titov committed
3701
3702
3703
3704
3705
3706
            Name for the training Dataset.

        Returns
        -------
        self : Booster
            Booster with set training Dataset name.
3707
        """
3708
        self._train_data_name = name
Nikita Titov's avatar
Nikita Titov committed
3709
        return self
wxchan's avatar
wxchan committed
3710

3711
    def add_valid(self, data: Dataset, name: str) -> "Booster":
3712
        """Add validation data.
wxchan's avatar
wxchan committed
3713
3714
3715
3716

        Parameters
        ----------
        data : Dataset
3717
            Validation data.
3718
        name : str
3719
            Name of validation data.
Nikita Titov's avatar
Nikita Titov committed
3720
3721
3722
3723
3724

        Returns
        -------
        self : Booster
            Booster with set validation data.
wxchan's avatar
wxchan committed
3725
        """
Guolin Ke's avatar
Guolin Ke committed
3726
        if not isinstance(data, Dataset):
3727
            raise TypeError(f'Validation data should be Dataset instance, met {type(data).__name__}')
Guolin Ke's avatar
Guolin Ke committed
3728
        if data._predictor is not self.__init_predictor:
3729
3730
            raise LightGBMError("Add validation data failed, "
                                "you should use same predictor for these data")
wxchan's avatar
wxchan committed
3731
        _safe_call(_LIB.LGBM_BoosterAddValidData(
3732
3733
            self._handle,
            data.construct()._handle))
wxchan's avatar
wxchan committed
3734
3735
3736
3737
3738
        self.valid_sets.append(data)
        self.name_valid_sets.append(name)
        self.__num_dataset += 1
        self.__inner_predict_buffer.append(None)
        self.__is_predicted_cur_iter.append(False)
Nikita Titov's avatar
Nikita Titov committed
3739
        return self
wxchan's avatar
wxchan committed
3740

3741
    def reset_parameter(self, params: Dict[str, Any]) -> "Booster":
3742
        """Reset parameters of Booster.
wxchan's avatar
wxchan committed
3743
3744
3745
3746

        Parameters
        ----------
        params : dict
3747
            New parameters for Booster.
Nikita Titov's avatar
Nikita Titov committed
3748
3749
3750
3751
3752

        Returns
        -------
        self : Booster
            Booster with new parameters.
wxchan's avatar
wxchan committed
3753
        """
3754
        params_str = _param_dict_to_str(params)
wxchan's avatar
wxchan committed
3755
3756
        if params_str:
            _safe_call(_LIB.LGBM_BoosterResetParameter(
3757
                self._handle,
3758
                _c_str(params_str)))
Guolin Ke's avatar
Guolin Ke committed
3759
        self.params.update(params)
Nikita Titov's avatar
Nikita Titov committed
3760
        return self
wxchan's avatar
wxchan committed
3761

3762
3763
3764
3765
3766
    def update(
        self,
        train_set: Optional[Dataset] = None,
        fobj: Optional[_LGBM_CustomObjectiveFunction] = None
    ) -> bool:
Nikita Titov's avatar
Nikita Titov committed
3767
        """Update Booster for one iteration.
3768

wxchan's avatar
wxchan committed
3769
3770
        Parameters
        ----------
3771
3772
3773
3774
        train_set : Dataset or None, optional (default=None)
            Training data.
            If None, last training data is used.
        fobj : callable or None, optional (default=None)
wxchan's avatar
wxchan committed
3775
            Customized objective function.
3776
3777
3778
            Should accept two parameters: preds, train_data,
            and return (grad, hess).

3779
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
3780
                    The predicted values.
3781
3782
                    Predicted values are returned before any transformation,
                    e.g. they are raw margin instead of probability of positive class for binary task.
3783
3784
                train_data : Dataset
                    The training dataset.
3785
                grad : numpy 1-D array or numpy 2-D array (for multi-class task)
3786
3787
                    The value of the first order derivative (gradient) of the loss
                    with respect to the elements of preds for each sample point.
3788
                hess : numpy 1-D array or numpy 2-D array (for multi-class task)
3789
3790
                    The value of the second order derivative (Hessian) of the loss
                    with respect to the elements of preds for each sample point.
wxchan's avatar
wxchan committed
3791

3792
            For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes],
3793
            and grad and hess should be returned in the same format.
3794

wxchan's avatar
wxchan committed
3795
3796
        Returns
        -------
3797
3798
        is_finished : bool
            Whether the update was successfully finished.
wxchan's avatar
wxchan committed
3799
        """
3800
        # need reset training data
3801
3802
3803
3804
3805
3806
        if train_set is None and self.train_set_version != self.train_set.version:
            train_set = self.train_set
            is_the_same_train_set = False
        else:
            is_the_same_train_set = train_set is self.train_set and self.train_set_version == train_set.version
        if train_set is not None and not is_the_same_train_set:
Guolin Ke's avatar
Guolin Ke committed
3807
            if not isinstance(train_set, Dataset):
3808
                raise TypeError(f'Training data should be Dataset instance, met {type(train_set).__name__}')
Guolin Ke's avatar
Guolin Ke committed
3809
            if train_set._predictor is not self.__init_predictor:
3810
3811
                raise LightGBMError("Replace training data failed, "
                                    "you should use same predictor for these data")
wxchan's avatar
wxchan committed
3812
3813
            self.train_set = train_set
            _safe_call(_LIB.LGBM_BoosterResetTrainingData(
3814
3815
                self._handle,
                self.train_set.construct()._handle))
wxchan's avatar
wxchan committed
3816
            self.__inner_predict_buffer[0] = None
3817
            self.train_set_version = self.train_set.version
wxchan's avatar
wxchan committed
3818
3819
        is_finished = ctypes.c_int(0)
        if fobj is None:
3820
            if self.__set_objective_to_none:
3821
                raise LightGBMError('Cannot update due to null objective function.')
wxchan's avatar
wxchan committed
3822
            _safe_call(_LIB.LGBM_BoosterUpdateOneIter(
3823
                self._handle,
wxchan's avatar
wxchan committed
3824
                ctypes.byref(is_finished)))
3825
            self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
wxchan's avatar
wxchan committed
3826
3827
            return is_finished.value == 1
        else:
3828
            if not self.__set_objective_to_none:
Nikita Titov's avatar
Nikita Titov committed
3829
                self.reset_parameter({"objective": "none"}).__set_objective_to_none = True
wxchan's avatar
wxchan committed
3830
3831
3832
            grad, hess = fobj(self.__inner_predict(0), self.train_set)
            return self.__boost(grad, hess)

3833
3834
3835
3836
3837
    def __boost(
        self,
        grad: np.ndarray,
        hess: np.ndarray
    ) -> bool:
3838
        """Boost Booster for one iteration with customized gradient statistics.
Nikita Titov's avatar
Nikita Titov committed
3839

Nikita Titov's avatar
Nikita Titov committed
3840
3841
        .. note::

3842
3843
            Score is returned before any transformation,
            e.g. it is raw margin instead of probability of positive class for binary task.
3844
            For multi-class task, score are numpy 2-D array of shape = [n_samples, n_classes],
3845
            and grad and hess should be returned in the same format.
3846

wxchan's avatar
wxchan committed
3847
3848
        Parameters
        ----------
3849
        grad : numpy 1-D array or numpy 2-D array (for multi-class task)
3850
3851
            The value of the first order derivative (gradient) of the loss
            with respect to the elements of score for each sample point.
3852
        hess : numpy 1-D array or numpy 2-D array (for multi-class task)
3853
3854
            The value of the second order derivative (Hessian) of the loss
            with respect to the elements of score for each sample point.
wxchan's avatar
wxchan committed
3855
3856
3857

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
3858
3859
        is_finished : bool
            Whether the boost was successfully finished.
wxchan's avatar
wxchan committed
3860
        """
3861
3862
3863
        if self.__num_class > 1:
            grad = grad.ravel(order='F')
            hess = hess.ravel(order='F')
3864
3865
        grad = _list_to_1d_numpy(grad, dtype=np.float32, name='gradient')
        hess = _list_to_1d_numpy(hess, dtype=np.float32, name='hessian')
3866
3867
        assert grad.flags.c_contiguous
        assert hess.flags.c_contiguous
wxchan's avatar
wxchan committed
3868
        if len(grad) != len(hess):
3869
3870
            raise ValueError(f"Lengths of gradient ({len(grad)}) and Hessian ({len(hess)}) don't match")
        num_train_data = self.train_set.num_data()
3871
        if len(grad) != num_train_data * self.__num_class:
3872
3873
3874
            raise ValueError(
                f"Lengths of gradient ({len(grad)}) and Hessian ({len(hess)}) "
                f"don't match training data length ({num_train_data}) * "
3875
                f"number of models per one iteration ({self.__num_class})"
3876
            )
wxchan's avatar
wxchan committed
3877
3878
        is_finished = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterUpdateOneIterCustom(
3879
            self._handle,
wxchan's avatar
wxchan committed
3880
3881
3882
            grad.ctypes.data_as(ctypes.POINTER(ctypes.c_float)),
            hess.ctypes.data_as(ctypes.POINTER(ctypes.c_float)),
            ctypes.byref(is_finished)))
3883
        self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
wxchan's avatar
wxchan committed
3884
3885
        return is_finished.value == 1

3886
    def rollback_one_iter(self) -> "Booster":
Nikita Titov's avatar
Nikita Titov committed
3887
3888
3889
3890
3891
3892
3893
        """Rollback one iteration.

        Returns
        -------
        self : Booster
            Booster with rolled back one iteration.
        """
wxchan's avatar
wxchan committed
3894
        _safe_call(_LIB.LGBM_BoosterRollbackOneIter(
3895
            self._handle))
3896
        self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
Nikita Titov's avatar
Nikita Titov committed
3897
        return self
wxchan's avatar
wxchan committed
3898

3899
    def current_iteration(self) -> int:
3900
3901
3902
3903
3904
3905
3906
        """Get the index of the current iteration.

        Returns
        -------
        cur_iter : int
            The index of the current iteration.
        """
Guolin Ke's avatar
Guolin Ke committed
3907
        out_cur_iter = ctypes.c_int(0)
wxchan's avatar
wxchan committed
3908
        _safe_call(_LIB.LGBM_BoosterGetCurrentIteration(
3909
            self._handle,
wxchan's avatar
wxchan committed
3910
3911
3912
            ctypes.byref(out_cur_iter)))
        return out_cur_iter.value

3913
    def num_model_per_iteration(self) -> int:
3914
3915
3916
3917
3918
3919
3920
3921
3922
        """Get number of models per iteration.

        Returns
        -------
        model_per_iter : int
            The number of models per iteration.
        """
        model_per_iter = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterNumModelPerIteration(
3923
            self._handle,
3924
3925
3926
            ctypes.byref(model_per_iter)))
        return model_per_iter.value

3927
    def num_trees(self) -> int:
3928
3929
3930
3931
3932
3933
3934
3935
3936
        """Get number of weak sub-models.

        Returns
        -------
        num_trees : int
            The number of weak sub-models.
        """
        num_trees = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterNumberOfTotalModel(
3937
            self._handle,
3938
3939
3940
            ctypes.byref(num_trees)))
        return num_trees.value

3941
    def upper_bound(self) -> float:
3942
3943
3944
3945
        """Get upper bound value of a model.

        Returns
        -------
3946
        upper_bound : float
3947
3948
3949
3950
            Upper bound value of the model.
        """
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetUpperBoundValue(
3951
            self._handle,
3952
3953
3954
            ctypes.byref(ret)))
        return ret.value

3955
    def lower_bound(self) -> float:
3956
3957
3958
3959
        """Get lower bound value of a model.

        Returns
        -------
3960
        lower_bound : float
3961
3962
3963
3964
            Lower bound value of the model.
        """
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetLowerBoundValue(
3965
            self._handle,
3966
3967
3968
            ctypes.byref(ret)))
        return ret.value

3969
3970
3971
3972
3973
3974
    def eval(
        self,
        data: Dataset,
        name: str,
        feval: Optional[Union[_LGBM_CustomEvalFunction, List[_LGBM_CustomEvalFunction]]] = None
    ) -> List[_LGBM_BoosterEvalMethodResultType]:
3975
        """Evaluate for data.
wxchan's avatar
wxchan committed
3976
3977
3978

        Parameters
        ----------
3979
3980
        data : Dataset
            Data for the evaluating.
3981
        name : str
3982
            Name of the data.
3983
        feval : callable, list of callable, or None, optional (default=None)
3984
            Customized evaluation function.
3985
            Each evaluation function should accept two parameters: preds, eval_data,
3986
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
3987

3988
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
3989
                    The predicted values.
3990
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
3991
                    If custom objective function is used, predicted values are returned before any transformation,
3992
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
3993
                eval_data : Dataset
3994
                    A ``Dataset`` to evaluate.
3995
                eval_name : str
Andrew Ziem's avatar
Andrew Ziem committed
3996
                    The name of evaluation function (without whitespace).
3997
3998
3999
4000
4001
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

wxchan's avatar
wxchan committed
4002
4003
        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
4004
        result : list
4005
            List with (dataset_name, eval_name, eval_result, is_higher_better) tuples.
wxchan's avatar
wxchan committed
4006
        """
Guolin Ke's avatar
Guolin Ke committed
4007
4008
        if not isinstance(data, Dataset):
            raise TypeError("Can only eval for Dataset instance")
wxchan's avatar
wxchan committed
4009
4010
4011
4012
        data_idx = -1
        if data is self.train_set:
            data_idx = 0
        else:
4013
            for i in range(len(self.valid_sets)):
wxchan's avatar
wxchan committed
4014
4015
4016
                if data is self.valid_sets[i]:
                    data_idx = i + 1
                    break
4017
        # need to push new valid data
wxchan's avatar
wxchan committed
4018
4019
4020
4021
4022
4023
        if data_idx == -1:
            self.add_valid(data, name)
            data_idx = self.__num_dataset - 1

        return self.__inner_eval(name, data_idx, feval)

4024
4025
4026
4027
    def eval_train(
        self,
        feval: Optional[Union[_LGBM_CustomEvalFunction, List[_LGBM_CustomEvalFunction]]] = None
    ) -> List[_LGBM_BoosterEvalMethodResultType]:
4028
        """Evaluate for training data.
wxchan's avatar
wxchan committed
4029
4030
4031

        Parameters
        ----------
4032
        feval : callable, list of callable, or None, optional (default=None)
4033
            Customized evaluation function.
4034
            Each evaluation function should accept two parameters: preds, eval_data,
4035
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
4036

4037
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
4038
                    The predicted values.
4039
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
4040
                    If custom objective function is used, predicted values are returned before any transformation,
4041
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
Akshita Dixit's avatar
Akshita Dixit committed
4042
                eval_data : Dataset
4043
                    The training dataset.
4044
                eval_name : str
Andrew Ziem's avatar
Andrew Ziem committed
4045
                    The name of evaluation function (without whitespace).
4046
4047
4048
4049
4050
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

wxchan's avatar
wxchan committed
4051
4052
        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
4053
        result : list
4054
            List with (train_dataset_name, eval_name, eval_result, is_higher_better) tuples.
wxchan's avatar
wxchan committed
4055
        """
4056
        return self.__inner_eval(self._train_data_name, 0, feval)
wxchan's avatar
wxchan committed
4057

4058
4059
4060
4061
    def eval_valid(
        self,
        feval: Optional[Union[_LGBM_CustomEvalFunction, List[_LGBM_CustomEvalFunction]]] = None
    ) -> List[_LGBM_BoosterEvalMethodResultType]:
4062
        """Evaluate for validation data.
wxchan's avatar
wxchan committed
4063
4064
4065

        Parameters
        ----------
4066
        feval : callable, list of callable, or None, optional (default=None)
4067
            Customized evaluation function.
4068
            Each evaluation function should accept two parameters: preds, eval_data,
4069
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
4070

4071
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
4072
                    The predicted values.
4073
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
4074
                    If custom objective function is used, predicted values are returned before any transformation,
4075
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
Akshita Dixit's avatar
Akshita Dixit committed
4076
                eval_data : Dataset
4077
                    The validation dataset.
4078
                eval_name : str
Andrew Ziem's avatar
Andrew Ziem committed
4079
                    The name of evaluation function (without whitespace).
4080
4081
4082
4083
4084
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

wxchan's avatar
wxchan committed
4085
4086
        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
4087
        result : list
4088
            List with (validation_dataset_name, eval_name, eval_result, is_higher_better) tuples.
wxchan's avatar
wxchan committed
4089
        """
4090
        return [item for i in range(1, self.__num_dataset)
wxchan's avatar
wxchan committed
4091
                for item in self.__inner_eval(self.name_valid_sets[i - 1], i, feval)]
wxchan's avatar
wxchan committed
4092

4093
4094
4095
4096
4097
4098
4099
    def save_model(
        self,
        filename: Union[str, Path],
        num_iteration: Optional[int] = None,
        start_iteration: int = 0,
        importance_type: str = 'split'
    ) -> "Booster":
4100
        """Save Booster to file.
wxchan's avatar
wxchan committed
4101
4102
4103

        Parameters
        ----------
4104
        filename : str or pathlib.Path
4105
            Filename to save Booster.
4106
4107
4108
4109
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be saved.
            If None, if the best iteration exists, it is saved; otherwise, all iterations are saved.
            If <= 0, all iterations are saved.
Nikita Titov's avatar
Nikita Titov committed
4110
        start_iteration : int, optional (default=0)
4111
            Start index of the iteration that should be saved.
4112
        importance_type : str, optional (default="split")
4113
4114
4115
            What type of feature importance should be saved.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
Nikita Titov's avatar
Nikita Titov committed
4116
4117
4118
4119
4120

        Returns
        -------
        self : Booster
            Returns self.
wxchan's avatar
wxchan committed
4121
        """
4122
        if num_iteration is None:
4123
            num_iteration = self.best_iteration
4124
        importance_type_int = _FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
wxchan's avatar
wxchan committed
4125
        _safe_call(_LIB.LGBM_BoosterSaveModel(
4126
            self._handle,
4127
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
4128
            ctypes.c_int(num_iteration),
4129
            ctypes.c_int(importance_type_int),
4130
            _c_str(str(filename))))
4131
        _dump_pandas_categorical(self.pandas_categorical, filename)
Nikita Titov's avatar
Nikita Titov committed
4132
        return self
wxchan's avatar
wxchan committed
4133

4134
4135
4136
4137
4138
    def shuffle_models(
        self,
        start_iteration: int = 0,
        end_iteration: int = -1
    ) -> "Booster":
4139
        """Shuffle models.
Nikita Titov's avatar
Nikita Titov committed
4140

4141
4142
4143
        Parameters
        ----------
        start_iteration : int, optional (default=0)
4144
            The first iteration that will be shuffled.
4145
4146
        end_iteration : int, optional (default=-1)
            The last iteration that will be shuffled.
4147
            If <= 0, means the last available iteration.
4148

Nikita Titov's avatar
Nikita Titov committed
4149
4150
4151
4152
        Returns
        -------
        self : Booster
            Booster with shuffled models.
4153
        """
4154
        _safe_call(_LIB.LGBM_BoosterShuffleModels(
4155
            self._handle,
Guolin Ke's avatar
Guolin Ke committed
4156
4157
            ctypes.c_int(start_iteration),
            ctypes.c_int(end_iteration)))
Nikita Titov's avatar
Nikita Titov committed
4158
        return self
4159

4160
    def model_from_string(self, model_str: str) -> "Booster":
4161
4162
4163
4164
        """Load Booster from a string.

        Parameters
        ----------
4165
        model_str : str
4166
4167
4168
4169
            Model will be loaded from this string.

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
4170
        self : Booster
4171
4172
            Loaded Booster object.
        """
4173
4174
4175
        # ensure that existing Booster is freed before replacing it
        # with a new one createdfrom file
        _safe_call(_LIB.LGBM_BoosterFree(self._handle))
4176
        self._free_buffer()
4177
        self._handle = ctypes.c_void_p()
4178
4179
        out_num_iterations = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterLoadModelFromString(
4180
            _c_str(model_str),
4181
            ctypes.byref(out_num_iterations),
4182
            ctypes.byref(self._handle)))
4183
4184
        out_num_class = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetNumClasses(
4185
            self._handle,
4186
4187
            ctypes.byref(out_num_class)))
        self.__num_class = out_num_class.value
4188
        self.pandas_categorical = _load_pandas_categorical(model_str=model_str)
4189
4190
        return self

4191
4192
4193
4194
4195
4196
    def model_to_string(
        self,
        num_iteration: Optional[int] = None,
        start_iteration: int = 0,
        importance_type: str = 'split'
    ) -> str:
4197
        """Save Booster to string.
4198

4199
4200
4201
4202
4203
4204
        Parameters
        ----------
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be saved.
            If None, if the best iteration exists, it is saved; otherwise, all iterations are saved.
            If <= 0, all iterations are saved.
Nikita Titov's avatar
Nikita Titov committed
4205
        start_iteration : int, optional (default=0)
4206
            Start index of the iteration that should be saved.
4207
        importance_type : str, optional (default="split")
4208
4209
4210
            What type of feature importance should be saved.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
4211
4212
4213

        Returns
        -------
4214
        str_repr : str
4215
4216
            String representation of Booster.
        """
4217
        if num_iteration is None:
4218
            num_iteration = self.best_iteration
4219
        importance_type_int = _FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
4220
        buffer_len = 1 << 20
4221
        tmp_out_len = ctypes.c_int64(0)
4222
        string_buffer = ctypes.create_string_buffer(buffer_len)
4223
        ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
4224
        _safe_call(_LIB.LGBM_BoosterSaveModelToString(
4225
            self._handle,
4226
            ctypes.c_int(start_iteration),
4227
            ctypes.c_int(num_iteration),
4228
            ctypes.c_int(importance_type_int),
4229
            ctypes.c_int64(buffer_len),
4230
4231
4232
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
4233
        # if buffer length is not long enough, re-allocate a buffer
4234
4235
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
4236
            ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
4237
            _safe_call(_LIB.LGBM_BoosterSaveModelToString(
4238
                self._handle,
4239
                ctypes.c_int(start_iteration),
4240
                ctypes.c_int(num_iteration),
4241
                ctypes.c_int(importance_type_int),
4242
                ctypes.c_int64(actual_len),
4243
4244
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
4245
        ret = string_buffer.value.decode('utf-8')
4246
4247
        ret += _dump_pandas_categorical(self.pandas_categorical)
        return ret
4248

4249
4250
4251
4252
4253
4254
4255
    def dump_model(
        self,
        num_iteration: Optional[int] = None,
        start_iteration: int = 0,
        importance_type: str = 'split',
        object_hook: Optional[Callable[[Dict[str, Any]], Dict[str, Any]]] = None
    ) -> Dict[str, Any]:
Nikita Titov's avatar
Nikita Titov committed
4256
        """Dump Booster to JSON format.
wxchan's avatar
wxchan committed
4257

4258
4259
        Parameters
        ----------
4260
4261
4262
4263
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be dumped.
            If None, if the best iteration exists, it is dumped; otherwise, all iterations are dumped.
            If <= 0, all iterations are dumped.
Nikita Titov's avatar
Nikita Titov committed
4264
        start_iteration : int, optional (default=0)
4265
            Start index of the iteration that should be dumped.
4266
        importance_type : str, optional (default="split")
4267
4268
4269
            What type of feature importance should be dumped.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
4270
4271
4272
4273
4274
4275
4276
4277
4278
        object_hook : callable or None, optional (default=None)
            If not None, ``object_hook`` is a function called while parsing the json
            string returned by the C API. It may be used to alter the json, to store
            specific values while building the json structure. It avoids
            walking through the structure again. It saves a significant amount
            of time if the number of trees is huge.
            Signature is ``def object_hook(node: dict) -> dict``.
            None is equivalent to ``lambda node: node``.
            See documentation of ``json.loads()`` for further details.
4279

wxchan's avatar
wxchan committed
4280
4281
        Returns
        -------
4282
        json_repr : dict
Nikita Titov's avatar
Nikita Titov committed
4283
            JSON format of Booster.
wxchan's avatar
wxchan committed
4284
        """
4285
        if num_iteration is None:
4286
            num_iteration = self.best_iteration
4287
        importance_type_int = _FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
wxchan's avatar
wxchan committed
4288
        buffer_len = 1 << 20
4289
        tmp_out_len = ctypes.c_int64(0)
wxchan's avatar
wxchan committed
4290
        string_buffer = ctypes.create_string_buffer(buffer_len)
4291
        ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
wxchan's avatar
wxchan committed
4292
        _safe_call(_LIB.LGBM_BoosterDumpModel(
4293
            self._handle,
4294
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
4295
            ctypes.c_int(num_iteration),
4296
            ctypes.c_int(importance_type_int),
4297
            ctypes.c_int64(buffer_len),
wxchan's avatar
wxchan committed
4298
            ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
4299
            ptr_string_buffer))
wxchan's avatar
wxchan committed
4300
        actual_len = tmp_out_len.value
4301
        # if buffer length is not long enough, reallocate a buffer
wxchan's avatar
wxchan committed
4302
4303
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
4304
            ptr_string_buffer = ctypes.c_char_p(ctypes.addressof(string_buffer))
wxchan's avatar
wxchan committed
4305
            _safe_call(_LIB.LGBM_BoosterDumpModel(
4306
                self._handle,
4307
                ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
4308
                ctypes.c_int(num_iteration),
4309
                ctypes.c_int(importance_type_int),
4310
                ctypes.c_int64(actual_len),
wxchan's avatar
wxchan committed
4311
                ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
4312
                ptr_string_buffer))
4313
        ret = json.loads(string_buffer.value.decode('utf-8'), object_hook=object_hook)
4314
        ret['pandas_categorical'] = json.loads(json.dumps(self.pandas_categorical,
4315
                                                          default=_json_default_with_numpy))
4316
        return ret
wxchan's avatar
wxchan committed
4317

4318
4319
    def predict(
        self,
4320
        data: _LGBM_PredictDataType,
4321
4322
4323
4324
4325
4326
4327
4328
        start_iteration: int = 0,
        num_iteration: Optional[int] = None,
        raw_score: bool = False,
        pred_leaf: bool = False,
        pred_contrib: bool = False,
        data_has_header: bool = False,
        validate_features: bool = False,
        **kwargs: Any
4329
    ) -> Union[np.ndarray, scipy.sparse.spmatrix, List[scipy.sparse.spmatrix]]:
4330
        """Make a prediction.
wxchan's avatar
wxchan committed
4331
4332
4333

        Parameters
        ----------
4334
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
4335
            Data source for prediction.
4336
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
4337
        start_iteration : int, optional (default=0)
4338
            Start index of the iteration to predict.
4339
            If <= 0, starts from the first iteration.
4340
        num_iteration : int or None, optional (default=None)
4341
4342
4343
4344
            Total number of iterations used in the prediction.
            If None, if the best iteration exists and start_iteration <= 0, the best iteration is used;
            otherwise, all iterations from ``start_iteration`` are used (no limits).
            If <= 0, all iterations from ``start_iteration`` are used (no limits).
4345
4346
4347
4348
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        pred_leaf : bool, optional (default=False)
            Whether to predict leaf index.
4349
4350
        pred_contrib : bool, optional (default=False)
            Whether to predict feature contributions.
4351

Nikita Titov's avatar
Nikita Titov committed
4352
4353
4354
4355
4356
4357
4358
            .. note::

                If you want to get more explanations for your model's predictions using SHAP values,
                like SHAP interaction values,
                you can install the shap package (https://github.com/slundberg/shap).
                Note that unlike the shap package, with ``pred_contrib`` we return a matrix with an extra
                column, where the last column is the expected value.
4359

4360
4361
        data_has_header : bool, optional (default=False)
            Whether the data has header.
4362
            Used only if data is str.
4363
4364
4365
        validate_features : bool, optional (default=False)
            If True, ensure that the features used to predict match the ones used to train.
            Used only if data is pandas DataFrame.
4366
4367
        **kwargs
            Other parameters for the prediction.
wxchan's avatar
wxchan committed
4368
4369
4370

        Returns
        -------
4371
        result : numpy array, scipy.sparse or list of scipy.sparse
4372
            Prediction result.
4373
            Can be sparse or a list of sparse objects (each element represents predictions for one class) for feature contributions (when ``pred_contrib=True``).
wxchan's avatar
wxchan committed
4374
        """
4375
4376
4377
4378
        predictor = _InnerPredictor.from_booster(
            booster=self,
            pred_parameter=deepcopy(kwargs),
        )
4379
        if num_iteration is None:
4380
            if start_iteration <= 0:
4381
4382
4383
                num_iteration = self.best_iteration
            else:
                num_iteration = -1
4384
4385
4386
4387
4388
4389
4390
4391
4392
4393
        return predictor.predict(
            data=data,
            start_iteration=start_iteration,
            num_iteration=num_iteration,
            raw_score=raw_score,
            pred_leaf=pred_leaf,
            pred_contrib=pred_contrib,
            data_has_header=data_has_header,
            validate_features=validate_features
        )
wxchan's avatar
wxchan committed
4394

4395
4396
    def refit(
        self,
4397
        data: _LGBM_TrainDataType,
4398
        label: _LGBM_LabelType,
4399
4400
        decay_rate: float = 0.9,
        reference: Optional[Dataset] = None,
4401
4402
4403
        weight: Optional[_LGBM_WeightType] = None,
        group: Optional[_LGBM_GroupType] = None,
        init_score: Optional[_LGBM_InitScoreType] = None,
4404
4405
        feature_name: _LGBM_FeatureNameConfiguration = 'auto',
        categorical_feature: _LGBM_CategoricalFeatureConfiguration = 'auto',
4406
4407
4408
        dataset_params: Optional[Dict[str, Any]] = None,
        free_raw_data: bool = True,
        validate_features: bool = False,
4409
        **kwargs
4410
    ) -> "Booster":
Guolin Ke's avatar
Guolin Ke committed
4411
4412
4413
4414
        """Refit the existing Booster by new data.

        Parameters
        ----------
4415
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array
Guolin Ke's avatar
Guolin Ke committed
4416
            Data source for refit.
4417
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
4418
        label : list, numpy 1-D array, pandas Series / one-column DataFrame, pyarrow Array or pyarrow ChunkedArray
Guolin Ke's avatar
Guolin Ke committed
4419
4420
            Label for refit.
        decay_rate : float, optional (default=0.9)
4421
4422
            Decay rate of refit,
            will use ``leaf_output = decay_rate * old_leaf_output + (1.0 - decay_rate) * new_leaf_output`` to refit trees.
4423
4424
        reference : Dataset or None, optional (default=None)
            Reference for ``data``.
4425
4426
4427

            .. versionadded:: 4.0.0

4428
        weight : list, numpy 1-D array, pandas Series, pyarrow Array, pyarrow ChunkedArray or None, optional (default=None)
4429
            Weight for each ``data`` instance. Weights should be non-negative.
4430
4431
4432

            .. versionadded:: 4.0.0

4433
4434
4435
4436
4437
4438
        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
            Group/query size for ``data``.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
4439
4440
4441

            .. versionadded:: 4.0.0

4442
4443
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None, optional (default=None)
            Init score for ``data``.
4444
4445
4446

            .. versionadded:: 4.0.0

4447
4448
4449
        feature_name : list of str, or 'auto', optional (default="auto")
            Feature names for ``data``.
            If 'auto' and data is pandas DataFrame, data columns names are used.
4450
4451
4452

            .. versionadded:: 4.0.0

4453
4454
4455
4456
4457
        categorical_feature : list of str or int, or 'auto', optional (default="auto")
            Categorical features for ``data``.
            If list of int, interpreted as indices.
            If list of str, interpreted as feature names (need to specify ``feature_name`` as well).
            If 'auto' and data is pandas DataFrame, pandas unordered categorical columns are used.
4458
            All values in categorical features will be cast to int32 and thus should be less than int32 max value (2147483647).
4459
4460
4461
            Large values could be memory consuming. Consider using consecutive integers starting from zero.
            All negative values in categorical features will be treated as missing values.
            The output cannot be monotonically constrained with respect to a categorical feature.
4462
            Floating point numbers in categorical features will be rounded towards 0.
4463
4464
4465

            .. versionadded:: 4.0.0

4466
4467
        dataset_params : dict or None, optional (default=None)
            Other parameters for Dataset ``data``.
4468
4469
4470

            .. versionadded:: 4.0.0

4471
4472
        free_raw_data : bool, optional (default=True)
            If True, raw data is freed after constructing inner Dataset for ``data``.
4473
4474
4475

            .. versionadded:: 4.0.0

4476
4477
4478
        validate_features : bool, optional (default=False)
            If True, ensure that the features used to refit the model match the original ones.
            Used only if data is pandas DataFrame.
4479
4480
4481

            .. versionadded:: 4.0.0

4482
4483
        **kwargs
            Other parameters for refit.
4484
            These parameters will be passed to ``predict`` method.
Guolin Ke's avatar
Guolin Ke committed
4485
4486
4487
4488
4489
4490

        Returns
        -------
        result : Booster
            Refitted Booster.
        """
4491
4492
        if self.__set_objective_to_none:
            raise LightGBMError('Cannot refit due to null objective function.')
4493
4494
        if dataset_params is None:
            dataset_params = {}
4495
4496
4497
4498
        predictor = _InnerPredictor.from_booster(
            booster=self,
            pred_parameter=deepcopy(kwargs)
        )
4499
        leaf_preds: np.ndarray = predictor.predict(  # type: ignore[assignment]
4500
4501
4502
4503
4504
            data=data,
            start_iteration=-1,
            pred_leaf=True,
            validate_features=validate_features
        )
4505
        nrow, ncol = leaf_preds.shape
4506
        out_is_linear = ctypes.c_int(0)
4507
        _safe_call(_LIB.LGBM_BoosterGetLinear(
4508
            self._handle,
4509
            ctypes.byref(out_is_linear)))
Nikita Titov's avatar
Nikita Titov committed
4510
4511
4512
4513
4514
        new_params = _choose_param_value(
            main_param_name="linear_tree",
            params=self.params,
            default_value=None
        )
4515
        new_params["linear_tree"] = bool(out_is_linear.value)
4516
4517
4518
4519
4520
4521
4522
4523
4524
4525
4526
4527
4528
        new_params.update(dataset_params)
        train_set = Dataset(
            data=data,
            label=label,
            reference=reference,
            weight=weight,
            group=group,
            init_score=init_score,
            feature_name=feature_name,
            categorical_feature=categorical_feature,
            params=new_params,
            free_raw_data=free_raw_data,
        )
4529
        new_params['refit_decay_rate'] = decay_rate
4530
        new_booster = Booster(new_params, train_set)
Guolin Ke's avatar
Guolin Ke committed
4531
4532
        # Copy models
        _safe_call(_LIB.LGBM_BoosterMerge(
4533
4534
            new_booster._handle,
            predictor._handle))
Guolin Ke's avatar
Guolin Ke committed
4535
        leaf_preds = leaf_preds.reshape(-1)
4536
        ptr_data, _, _ = _c_int_array(leaf_preds)
Guolin Ke's avatar
Guolin Ke committed
4537
        _safe_call(_LIB.LGBM_BoosterRefit(
4538
            new_booster._handle,
Guolin Ke's avatar
Guolin Ke committed
4539
            ptr_data,
4540
4541
            ctypes.c_int32(nrow),
            ctypes.c_int32(ncol)))
4542
        new_booster._network = self._network
Guolin Ke's avatar
Guolin Ke committed
4543
4544
        return new_booster

4545
    def get_leaf_output(self, tree_id: int, leaf_id: int) -> float:
4546
4547
4548
4549
4550
4551
4552
4553
4554
4555
4556
4557
4558
4559
        """Get the output of a leaf.

        Parameters
        ----------
        tree_id : int
            The index of the tree.
        leaf_id : int
            The index of the leaf in the tree.

        Returns
        -------
        result : float
            The output of the leaf.
        """
4560
4561
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetLeafValue(
4562
            self._handle,
4563
4564
4565
4566
4567
            ctypes.c_int(tree_id),
            ctypes.c_int(leaf_id),
            ctypes.byref(ret)))
        return ret.value

4568
4569
4570
4571
4572
4573
4574
4575
    def set_leaf_output(
        self,
        tree_id: int,
        leaf_id: int,
        value: float,
    ) -> 'Booster':
        """Set the output of a leaf.

4576
4577
        .. versionadded:: 4.0.0

4578
4579
4580
4581
4582
4583
4584
4585
4586
4587
4588
4589
4590
4591
4592
4593
        Parameters
        ----------
        tree_id : int
            The index of the tree.
        leaf_id : int
            The index of the leaf in the tree.
        value : float
            Value to set as the output of the leaf.

        Returns
        -------
        self : Booster
            Booster with the leaf output set.
        """
        _safe_call(
            _LIB.LGBM_BoosterSetLeafValue(
4594
                self._handle,
4595
4596
4597
4598
4599
4600
4601
                ctypes.c_int(tree_id),
                ctypes.c_int(leaf_id),
                ctypes.c_double(value)
            )
        )
        return self

4602
    def num_feature(self) -> int:
4603
4604
4605
4606
4607
4608
4609
        """Get number of features.

        Returns
        -------
        num_feature : int
            The number of features.
        """
4610
4611
        out_num_feature = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetNumFeature(
4612
            self._handle,
4613
4614
4615
            ctypes.byref(out_num_feature)))
        return out_num_feature.value

4616
    def feature_name(self) -> List[str]:
4617
        """Get names of features.
wxchan's avatar
wxchan committed
4618
4619
4620

        Returns
        -------
4621
        result : list of str
4622
            List with names of features.
wxchan's avatar
wxchan committed
4623
        """
4624
        num_feature = self.num_feature()
4625
        # Get name of features
wxchan's avatar
wxchan committed
4626
        tmp_out_len = ctypes.c_int(0)
4627
4628
        reserved_string_buffer_size = 255
        required_string_buffer_size = ctypes.c_size_t(0)
4629
        string_buffers = [ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(num_feature)]
wxchan's avatar
wxchan committed
4630
4631
        ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
        _safe_call(_LIB.LGBM_BoosterGetFeatureNames(
4632
            self._handle,
4633
            ctypes.c_int(num_feature),
wxchan's avatar
wxchan committed
4634
            ctypes.byref(tmp_out_len),
4635
            ctypes.c_size_t(reserved_string_buffer_size),
4636
            ctypes.byref(required_string_buffer_size),
wxchan's avatar
wxchan committed
4637
4638
4639
            ptr_string_buffers))
        if num_feature != tmp_out_len.value:
            raise ValueError("Length of feature names doesn't equal with num_feature")
4640
4641
4642
4643
4644
4645
        actual_string_buffer_size = required_string_buffer_size.value
        # if buffer length is not long enough, reallocate buffers
        if reserved_string_buffer_size < actual_string_buffer_size:
            string_buffers = [ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(num_feature)]
            ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
            _safe_call(_LIB.LGBM_BoosterGetFeatureNames(
4646
                self._handle,
4647
4648
4649
4650
4651
                ctypes.c_int(num_feature),
                ctypes.byref(tmp_out_len),
                ctypes.c_size_t(actual_string_buffer_size),
                ctypes.byref(required_string_buffer_size),
                ptr_string_buffers))
4652
        return [string_buffers[i].value.decode('utf-8') for i in range(num_feature)]
wxchan's avatar
wxchan committed
4653

4654
4655
4656
4657
4658
    def feature_importance(
        self,
        importance_type: str = 'split',
        iteration: Optional[int] = None
    ) -> np.ndarray:
4659
        """Get feature importances.
4660

4661
4662
        Parameters
        ----------
4663
        importance_type : str, optional (default="split")
4664
4665
4666
            How the importance is calculated.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
4667
4668
4669
4670
        iteration : int or None, optional (default=None)
            Limit number of iterations in the feature importance calculation.
            If None, if the best iteration exists, it is used; otherwise, all trees are used.
            If <= 0, all trees are used (no limits).
4671

4672
4673
        Returns
        -------
4674
4675
        result : numpy array
            Array with feature importances.
4676
        """
4677
4678
        if iteration is None:
            iteration = self.best_iteration
4679
        importance_type_int = _FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
4680
        result = np.empty(self.num_feature(), dtype=np.float64)
4681
        _safe_call(_LIB.LGBM_BoosterFeatureImportance(
4682
            self._handle,
4683
4684
4685
            ctypes.c_int(iteration),
            ctypes.c_int(importance_type_int),
            result.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
4686
        if importance_type_int == _C_API_FEATURE_IMPORTANCE_SPLIT:
4687
            return result.astype(np.int32)
4688
4689
        else:
            return result
4690

4691
4692
4693
4694
4695
4696
    def get_split_value_histogram(
        self,
        feature: Union[int, str],
        bins: Optional[Union[int, str]] = None,
        xgboost_style: bool = False
    ) -> Union[Tuple[np.ndarray, np.ndarray], np.ndarray, pd_DataFrame]:
4697
4698
4699
4700
        """Get split value histogram for the specified feature.

        Parameters
        ----------
4701
        feature : int or str
4702
4703
            The feature name or index the histogram is calculated for.
            If int, interpreted as index.
4704
            If str, interpreted as name.
4705

Nikita Titov's avatar
Nikita Titov committed
4706
4707
4708
            .. warning::

                Categorical features are not supported.
4709

4710
        bins : int, str or None, optional (default=None)
4711
4712
4713
            The maximum number of bins.
            If None, or int and > number of unique split values and ``xgboost_style=True``,
            the number of bins equals number of unique split values.
4714
            If str, it should be one from the list of the supported values by ``numpy.histogram()`` function.
4715
4716
4717
4718
4719
4720
4721
4722
4723
4724
4725
4726
4727
4728
        xgboost_style : bool, optional (default=False)
            Whether the returned result should be in the same form as it is in XGBoost.
            If False, the returned value is tuple of 2 numpy arrays as it is in ``numpy.histogram()`` function.
            If True, the returned value is matrix, in which the first column is the right edges of non-empty bins
            and the second one is the histogram values.

        Returns
        -------
        result_tuple : tuple of 2 numpy arrays
            If ``xgboost_style=False``, the values of the histogram of used splitting values for the specified feature
            and the bin edges.
        result_array_like : numpy array or pandas DataFrame (if pandas is installed)
            If ``xgboost_style=True``, the histogram of used splitting values for the specified feature.
        """
4729
        def add(root: Dict[str, Any]) -> None:
4730
4731
            """Recursively add thresholds."""
            if 'split_index' in root:  # non-leaf
4732
                if feature_names is not None and isinstance(feature, str):
4733
4734
4735
4736
                    split_feature = feature_names[root['split_feature']]
                else:
                    split_feature = root['split_feature']
                if split_feature == feature:
4737
                    if isinstance(root['threshold'], str):
4738
4739
4740
                        raise LightGBMError('Cannot compute split value histogram for the categorical feature')
                    else:
                        values.append(root['threshold'])
4741
4742
4743
4744
4745
4746
                add(root['left_child'])
                add(root['right_child'])

        model = self.dump_model()
        feature_names = model.get('feature_names')
        tree_infos = model['tree_info']
4747
        values: List[float] = []
4748
4749
4750
        for tree_info in tree_infos:
            add(tree_info['tree_structure'])

4751
        if bins is None or isinstance(bins, int) and xgboost_style:
4752
4753
4754
4755
4756
4757
4758
            n_unique = len(np.unique(values))
            bins = max(min(n_unique, bins) if bins is not None else n_unique, 1)
        hist, bin_edges = np.histogram(values, bins=bins)
        if xgboost_style:
            ret = np.column_stack((bin_edges[1:], hist))
            ret = ret[ret[:, 1] > 0]
            if PANDAS_INSTALLED:
4759
                return pd_DataFrame(ret, columns=['SplitValue', 'Count'])
4760
4761
4762
4763
4764
            else:
                return ret
        else:
            return hist, bin_edges

4765
4766
4767
4768
    def __inner_eval(
        self,
        data_name: str,
        data_idx: int,
4769
        feval: Optional[Union[_LGBM_CustomEvalFunction, List[_LGBM_CustomEvalFunction]]]
4770
    ) -> List[_LGBM_BoosterEvalMethodResultType]:
4771
        """Evaluate training or validation data."""
wxchan's avatar
wxchan committed
4772
        if data_idx >= self.__num_dataset:
4773
            raise ValueError("Data_idx should be smaller than number of dataset")
wxchan's avatar
wxchan committed
4774
4775
4776
        self.__get_eval_info()
        ret = []
        if self.__num_inner_eval > 0:
4777
            result = np.empty(self.__num_inner_eval, dtype=np.float64)
Guolin Ke's avatar
Guolin Ke committed
4778
            tmp_out_len = ctypes.c_int(0)
wxchan's avatar
wxchan committed
4779
            _safe_call(_LIB.LGBM_BoosterGetEval(
4780
                self._handle,
Guolin Ke's avatar
Guolin Ke committed
4781
                ctypes.c_int(data_idx),
wxchan's avatar
wxchan committed
4782
                ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
4783
                result.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
wxchan's avatar
wxchan committed
4784
            if tmp_out_len.value != self.__num_inner_eval:
4785
                raise ValueError("Wrong length of eval results")
4786
            for i in range(self.__num_inner_eval):
4787
4788
                ret.append((data_name, self.__name_inner_eval[i],
                            result[i], self.__higher_better_inner_eval[i]))
4789
4790
        if callable(feval):
            feval = [feval]
wxchan's avatar
wxchan committed
4791
4792
4793
4794
4795
        if feval is not None:
            if data_idx == 0:
                cur_data = self.train_set
            else:
                cur_data = self.valid_sets[data_idx - 1]
4796
4797
4798
4799
4800
4801
4802
4803
4804
            for eval_function in feval:
                if eval_function is None:
                    continue
                feval_ret = eval_function(self.__inner_predict(data_idx), cur_data)
                if isinstance(feval_ret, list):
                    for eval_name, val, is_higher_better in feval_ret:
                        ret.append((data_name, eval_name, val, is_higher_better))
                else:
                    eval_name, val, is_higher_better = feval_ret
wxchan's avatar
wxchan committed
4805
4806
4807
                    ret.append((data_name, eval_name, val, is_higher_better))
        return ret

4808
    def __inner_predict(self, data_idx: int) -> np.ndarray:
4809
        """Predict for training and validation dataset."""
wxchan's avatar
wxchan committed
4810
        if data_idx >= self.__num_dataset:
4811
            raise ValueError("Data_idx should be smaller than number of dataset")
wxchan's avatar
wxchan committed
4812
4813
4814
4815
4816
        if self.__inner_predict_buffer[data_idx] is None:
            if data_idx == 0:
                n_preds = self.train_set.num_data() * self.__num_class
            else:
                n_preds = self.valid_sets[data_idx - 1].num_data() * self.__num_class
4817
            self.__inner_predict_buffer[data_idx] = np.empty(n_preds, dtype=np.float64)
4818
        # avoid to predict many time in one iteration
wxchan's avatar
wxchan committed
4819
4820
        if not self.__is_predicted_cur_iter[data_idx]:
            tmp_out_len = ctypes.c_int64(0)
4821
            data_ptr = self.__inner_predict_buffer[data_idx].ctypes.data_as(ctypes.POINTER(ctypes.c_double))  # type: ignore[union-attr]
wxchan's avatar
wxchan committed
4822
            _safe_call(_LIB.LGBM_BoosterGetPredict(
4823
                self._handle,
Guolin Ke's avatar
Guolin Ke committed
4824
                ctypes.c_int(data_idx),
wxchan's avatar
wxchan committed
4825
4826
                ctypes.byref(tmp_out_len),
                data_ptr))
4827
            if tmp_out_len.value != len(self.__inner_predict_buffer[data_idx]):  # type: ignore[arg-type]
4828
                raise ValueError(f"Wrong length of predict results for data {data_idx}")
wxchan's avatar
wxchan committed
4829
            self.__is_predicted_cur_iter[data_idx] = True
4830
        result: np.ndarray = self.__inner_predict_buffer[data_idx]  # type: ignore[assignment]
4831
4832
4833
4834
        if self.__num_class > 1:
            num_data = result.size // self.__num_class
            result = result.reshape(num_data, self.__num_class, order='F')
        return result
wxchan's avatar
wxchan committed
4835

4836
    def __get_eval_info(self) -> None:
4837
        """Get inner evaluation count and names."""
wxchan's avatar
wxchan committed
4838
4839
        if self.__need_reload_eval_info:
            self.__need_reload_eval_info = False
Guolin Ke's avatar
Guolin Ke committed
4840
            out_num_eval = ctypes.c_int(0)
4841
            # Get num of inner evals
wxchan's avatar
wxchan committed
4842
            _safe_call(_LIB.LGBM_BoosterGetEvalCounts(
4843
                self._handle,
wxchan's avatar
wxchan committed
4844
4845
4846
                ctypes.byref(out_num_eval)))
            self.__num_inner_eval = out_num_eval.value
            if self.__num_inner_eval > 0:
4847
                # Get name of eval metrics
Guolin Ke's avatar
Guolin Ke committed
4848
                tmp_out_len = ctypes.c_int(0)
4849
4850
4851
                reserved_string_buffer_size = 255
                required_string_buffer_size = ctypes.c_size_t(0)
                string_buffers = [
4852
                    ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(self.__num_inner_eval)
4853
                ]
wxchan's avatar
wxchan committed
4854
                ptr_string_buffers = (ctypes.c_char_p * self.__num_inner_eval)(*map(ctypes.addressof, string_buffers))
wxchan's avatar
wxchan committed
4855
                _safe_call(_LIB.LGBM_BoosterGetEvalNames(
4856
                    self._handle,
4857
                    ctypes.c_int(self.__num_inner_eval),
wxchan's avatar
wxchan committed
4858
                    ctypes.byref(tmp_out_len),
4859
                    ctypes.c_size_t(reserved_string_buffer_size),
4860
                    ctypes.byref(required_string_buffer_size),
wxchan's avatar
wxchan committed
4861
4862
                    ptr_string_buffers))
                if self.__num_inner_eval != tmp_out_len.value:
4863
                    raise ValueError("Length of eval names doesn't equal with num_evals")
4864
4865
4866
4867
4868
4869
4870
4871
                actual_string_buffer_size = required_string_buffer_size.value
                # if buffer length is not long enough, reallocate buffers
                if reserved_string_buffer_size < actual_string_buffer_size:
                    string_buffers = [
                        ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(self.__num_inner_eval)
                    ]
                    ptr_string_buffers = (ctypes.c_char_p * self.__num_inner_eval)(*map(ctypes.addressof, string_buffers))
                    _safe_call(_LIB.LGBM_BoosterGetEvalNames(
4872
                        self._handle,
4873
4874
4875
4876
4877
4878
4879
4880
4881
4882
4883
                        ctypes.c_int(self.__num_inner_eval),
                        ctypes.byref(tmp_out_len),
                        ctypes.c_size_t(actual_string_buffer_size),
                        ctypes.byref(required_string_buffer_size),
                        ptr_string_buffers))
                self.__name_inner_eval = [
                    string_buffers[i].value.decode('utf-8') for i in range(self.__num_inner_eval)
                ]
                self.__higher_better_inner_eval = [
                    name.startswith(('auc', 'ndcg@', 'map@', 'average_precision')) for name in self.__name_inner_eval
                ]