Commits · e7456783958da358068e997f5ee3d80c315d9a3d · ModelZoo / alphafold2_jax

29 Nov, 2023 1 commit
- add msas args · e7456783
  zhuwenwen authored Nov 29, 2023
  
  e7456783
23 Nov, 2023 1 commit
- use precomputed msas and features.pkl · 2590be89
  zhuwenwen authored Nov 23, 2023
  
  2590be89
20 Nov, 2023 1 commit
- modify model_names def · 5ecff046
  zhuwenwen authored Nov 20, 2023
  
  5ecff046
15 Nov, 2023 2 commits
- update to v2.3.2 · 818f108a
  zhuwenwen authored Nov 15, 2023
  
  818f108a
- remove unused code · 346a6479
  zhuwenwen authored Nov 15, 2023
  
  346a6479
10 Apr, 2023 1 commit
- initial alphafold2 · 3972a903
  zhuwenwen authored Apr 10, 2023
  
  3972a903
23 Jan, 2023 1 commit

Hamish Tomlinson authored Jan 23, 2023

PiperOrigin-RevId: 503968820
Change-Id: I2ab071d6872bc2f9eaab4a464aed684036b966d2

fed21ddd

17 Jan, 2023 1 commit
- Remove jax dependency from results pkl · 91ac85ac
  Hamish Tomlinson authored Jan 17, 2023
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PiperOrigin-RevId: 502584418
Change-Id: I8ab14363a6342726691213bbeb180c0a8ff7f932
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  91ac85ac
13 Jan, 2023 1 commit
- Add ability to only run relax for the best unrelaxed model. · 684ffa19
  Hamish Tomlinson authored Jan 13, 2023
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PiperOrigin-RevId: 501851892
Change-Id: I7484c2aa7ac30af611d88cfa8d632096c262824a
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  684ffa19
11 Dec, 2022 1 commit
- Release code for v2.3.0 · 9b18d6a9
  Augustin Zidek authored Dec 11, 2022
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PiperOrigin-RevId: 494507694
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  9b18d6a9
14 Jun, 2022 1 commit
- Remove unused type hint from run_alphafold script. · 157c0eaa
  Tom Ward authored Jun 14, 2022
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PiperOrigin-RevId: 454817469
Change-Id: I677ee0cabbcf64b4682a0f4b218c23daf95ac13e
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  157c0eaa
18 Feb, 2022 2 commits
- Remove prokaryotic pairing from AFOS. · 89a6875f
  Rich Evans authored Feb 18, 2022
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PiperOrigin-RevId: 429521382
Change-Id: Ib9bfce50834bb129af0dbd3508cd0b92856a9bb1
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  89a6875f
- Fix random_seed overflow when seeds per model > 1. · b787ca29
  Rich Evans authored Feb 18, 2022
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PiperOrigin-RevId: 429520386
Change-Id: Ic1ba2b31e25a0511fefe5d0d462fc5a218641a56
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  b787ca29
17 Feb, 2022 1 commit
- Enable multiple seeds per model for AlphaFold-Multimer. · eb49d157
  Rich Evans authored Feb 17, 2022
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PiperOrigin-RevId: 429318717
Change-Id: Ib07df7ecd4bc52feea80a66c585ce51f332ac7a1
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  eb49d157
27 Jan, 2022 1 commit
- Release code for v2.1.2 · 57a2455e
  Augustin Zidek authored Jan 27, 2022
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PiperOrigin-RevId: 424591903
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  57a2455e
05 Nov, 2021 1 commit

Explain better how to run the AlphaFold-Multimer system. · be37a41d

Augustin Zidek authored Nov 05, 2021

* Remove a confusing example that folds multiple complexes at once.
* Add examples on how to create the multimer input FASTA files.
* Add a note about the `model_preset` flag to the API changes.

PiperOrigin-RevId: 407774039
Change-Id: I80277c47febc977ba3956d0615944e62b0d5c3fc

be37a41d

02 Nov, 2021 1 commit
- Add code for AlphaFold-Multimer. · 0be2b30b
  Augustin-Zidek authored Nov 02, 2021
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PiperOrigin-RevId: 407076987
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  0be2b30b
13 Aug, 2021 1 commit
- Use pLDDT in the B-factor column of the output PDBs. · cef198e0
  Augustin Zidek authored Aug 13, 2021
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PiperOrigin-RevId: 390566020
Change-Id: I3fafbe8246d0a5ad018f0398b39bf7dacee00468
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  cef198e0
27 Jul, 2021 1 commit

Fix import ordering. · 1e216f93

Tom Ward authored Jul 27, 2021

PiperOrigin-RevId: 387085679
Change-Id: I73287fcd0a29e899543b64c596e306195a2f435e

1e216f93

22 Jul, 2021 1 commit
- Add a Colab notebook, add reduced BFD, and various other fixes and improvements. · 0bab1bf8
  Saran Tunyasuvunakool authored Jul 22, 2021
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PiperOrigin-RevId: 386228948
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  0bab1bf8
15 Jul, 2021 1 commit
- Initial release of AlphaFold. · 1109480e
  Augustin-Zidek authored Jul 15, 2021
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PiperOrigin-RevId: 384954738
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  1109480e