Commits · 165603f1013d889ade1ffbae1ca65d960b20e1ff · OpenDAS / OpenFold

28 Apr, 2022 6 commits
- Dockerfile CUDA compilation round 5 · 165603f1
  Gustaf Ahdritz authored Apr 27, 2022
  
  165603f1
- Dockerfile CUDA compilation round 4 · e9b75b2d
  Gustaf Ahdritz authored Apr 27, 2022
  
  e9b75b2d
- Dockerfile CUDA compilation round 3 · 9fa79bd0
  Gustaf Ahdritz authored Apr 27, 2022
  
  9fa79bd0
- Dockerfile CUDA compilation round 2 · 453c90ae
  Gustaf Ahdritz authored Apr 27, 2022
  
  453c90ae
- Test Dockerfile CUDA compilation · 23c69cbf
  Gustaf Ahdritz authored Apr 27, 2022
  
  23c69cbf
- Fix validation metric bugs · 78567a86
  Gustaf Ahdritz authored Apr 27, 2022
  
  78567a86
26 Apr, 2022 6 commits
- Update environment.yml · e1796607
  Gustaf Ahdritz authored Apr 26, 2022
  
  e1796607
- Add type check to attention kernel · 50078a62
  Gustaf Ahdritz authored Apr 26, 2022
  
  50078a62
- Remove stray comment · aada2a46
  Gustaf Ahdritz authored Apr 26, 2022
  
  aada2a46
- Add licence notice to kernel files · 41c3b0bc
  Gustaf Ahdritz authored Apr 26, 2022
  
  41c3b0bc
- Add FastFold link · 67b35775
  Gustaf Ahdritz authored Apr 26, 2022
  
  67b35775
- Add memory-efficient attention kernels · edb7d341
  Gustaf Ahdritz authored Apr 26, 2022
  
  edb7d341
21 Apr, 2022 2 commits
- Merge pull request #97 from CyrusBiotechnology/small-bugfixes · 816c1843
  Gustaf Ahdritz authored Apr 21, 2022
```
fixing CUDA versions in dockerfile and a small bug in run_pretrained_openfold.py
```
  816c1843
- fixing dockerfile and small bug in run_pretrained_openfold.py · 102c446f
  Sam DeLuca authored Apr 21, 2022
  
  102c446f
20 Apr, 2022 3 commits
- Correct wording in README · a43848dc
  Gustaf Ahdritz authored Apr 20, 2022
  
  a43848dc
- Add LMA arXiv link to README · bc35baa0
  Gustaf Ahdritz authored Apr 20, 2022
  
  bc35baa0
- Add features to README · 7e2b311f
  Gustaf Ahdritz authored Apr 20, 2022
  
  7e2b311f
19 Apr, 2022 1 commit
- Fix template bugs · 591d10d2
  Gustaf Ahdritz authored Apr 19, 2022
  
  591d10d2
15 Apr, 2022 1 commit
- Add missing pLDDT test · 8c169fb6
  Gustaf Ahdritz authored Apr 15, 2022
  
  8c169fb6
14 Apr, 2022 1 commit
- Fix evoformer paths in some old tests · 857e9b7c
  Gustaf Ahdritz authored Apr 13, 2022
  
  857e9b7c
13 Apr, 2022 1 commit
- Remove exception for num_recycle=0 · 9a8910f9
  Gustaf Ahdritz authored Apr 13, 2022
  
  9a8910f9
06 Apr, 2022 1 commit
- Improve memory management in extra msa stack · e310bba4
  Gustaf Ahdritz authored Apr 05, 2022
  
  e310bba4
30 Mar, 2022 5 commits
- Add latest FASTA parser · cdadff32
  Gustaf Ahdritz authored Mar 30, 2022
  
  cdadff32
- One more FASTA parsing fix... · dcc90728
  Gustaf Ahdritz authored Mar 29, 2022
  
  dcc90728
- Fix FASTA parsing again (hopefully for good) · 094e338f
  Gustaf Ahdritz authored Mar 29, 2022
  
  094e338f
- Fix FASTA parsing bug in inference script · c59a85b6
  Gustaf Ahdritz authored Mar 29, 2022
  
  c59a85b6
- Undo DeepSpeed config change · f362ebff
  Gustaf Ahdritz authored Mar 29, 2022
  
  f362ebff
29 Mar, 2022 3 commits
- Fix FASTA parsing bug in inference script, add option to save outputs · 16e0082f
  Gustaf Ahdritz authored Mar 29, 2022
  
  16e0082f
- Fix DeepSpeed config builder · 9f558178
  Gustaf Ahdritz authored Mar 29, 2022
  
  9f558178
- Fix bug in DeepSpeed config · 47f1d66a
  Gustaf Ahdritz authored Mar 29, 2022
  
  47f1d66a
23 Mar, 2022 1 commit
- Fix bug in DRMSD function · 2e3404a1
  Gustaf Ahdritz authored Mar 23, 2022
  
  2e3404a1
21 Mar, 2022 1 commit
- Fix default in LR scheduler · 86a1f756
  Gustaf Ahdritz authored Mar 21, 2022
  
  86a1f756
20 Mar, 2022 2 commits
- Tweak training script. Install new LR scheduler · 3dcc01a7
  Gustaf Ahdritz authored Mar 20, 2022
  
  3dcc01a7
- Add DRMSD edge case · 72a971b0
  Gustaf Ahdritz authored Mar 20, 2022
  
  72a971b0
19 Mar, 2022 1 commit
- Merge pull request #90 from KiddoZhu/main · fbbb0479
  Gustaf Ahdritz authored Mar 18, 2022
```
Fix parameter restorage after loading EMA parameters 
```
  fbbb0479
18 Mar, 2022 1 commit
- fix parameter restorage in validation · 9a08acd8
  Zhaocheng Zhu authored Mar 18, 2022
  
  9a08acd8
14 Mar, 2022 1 commit
- Fix bug in mmCIF cache script · c83c42e8
  Gustaf Ahdritz authored Mar 14, 2022
  
  c83c42e8
10 Mar, 2022 1 commit
- Add custom LR scheduler · c113e110
  Gustaf Ahdritz authored Mar 09, 2022
  
  c113e110
23 Feb, 2022 1 commit
- Fix typo in training script · 4a613bbe
  Gustaf Ahdritz authored Feb 23, 2022
  
  4a613bbe
22 Feb, 2022 1 commit
- Fix another undefined reference in training script · ff29bddb
  Gustaf Ahdritz authored Feb 22, 2022
  
  ff29bddb