Unverified Commit 7e2b311f authored by Gustaf Ahdritz's avatar Gustaf Ahdritz Committed by GitHub
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Add features to README

parent 591d10d2
......@@ -15,12 +15,20 @@ cases where the *Nature* paper differs from the source, we always defer to the
latter.
OpenFold is built to support inference with AlphaFold's original JAX weights.
Try it out with our [Colab notebook](https://colab.research.google.com/github/aqlaboratory/openfold/blob/main/notebooks/OpenFold.ipynb).
It's also faster than the official code on GPU. Try it out for yourself with
our [Colab notebook](https://colab.research.google.com/github/aqlaboratory/openfold/blob/main/notebooks/OpenFold.ipynb).
Unlike DeepMind's public code, OpenFold is also trainable. It can be trained
with [DeepSpeed](https://github.com/microsoft/deepspeed) and with either `fp16`
or `bfloat16` half-precision.
OpenFold is equipped with an implementation of low-memory attention
(Rabe & Staats 2021), which makes possible inference on extremely long chains.
We also make available efficient scripts for generating alignments. We've
used them to generate millions of alignments that will be released alongside
original OpenFold weights, trained from scratch using our code (more on that soon).
## Installation (Linux)
All Python dependencies are specified in `environment.yml`. For producing sequence
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