Commits · 03bb003a9d61ed0a0db66bb996f46b1754d7d821 · OpenDAS / OpenFold

"deploy/cloud/helm/platform/values.yaml" did not exist on "82f455d5664cb3be8de44a506f46dff4b51c2517"

22 Nov, 2021 6 commits
- Delete .dockerignore · 03bb003a
  Gustaf Ahdritz authored Nov 22, 2021
  
  03bb003a
- Delete Dockerfile · 4ff033db
  Gustaf Ahdritz authored Nov 22, 2021
  
  4ff033db
- Add alternative fasta file extension · 52800ff0
  Gustaf Ahdritz authored Nov 22, 2021
  
  52800ff0
- Add note about model initialization · d63363b7
  Gustaf Ahdritz authored Nov 22, 2021
  
  d63363b7
- Add option to run with no MSAs · 61df432b
  Gustaf Ahdritz authored Nov 22, 2021
  
  61df432b
- Note existence of config in README · 72b89b59
  Gustaf Ahdritz authored Nov 22, 2021
  
  72b89b59
20 Nov, 2021 2 commits
- Clarify README · 9329de4d
  Gustaf Ahdritz authored Nov 20, 2021
  
  9329de4d
- Remove submodule scripting from inference script · b8b5be86
  Gustaf Ahdritz authored Nov 20, 2021
  
  b8b5be86
19 Nov, 2021 7 commits
- Remove redundant parameter, add documentation for cache clearing · 71057ac7
  Gustaf Ahdritz authored Nov 19, 2021
  
  71057ac7
- Add cache clearing to config · 4bd43751
  Gustaf Ahdritz authored Nov 19, 2021
  
  4bd43751
- Clear cuda cache between extra MSA blocks to alleviate fragmentation · 263661a3
  Gustaf Ahdritz authored Nov 19, 2021
  
  263661a3
- Update README.md · 0ddf27a9
  Gustaf Ahdritz authored Nov 19, 2021
  
  0ddf27a9
- Update README.md · a1dbbe9c
  Gustaf Ahdritz authored Nov 19, 2021
  
  a1dbbe9c
- Fix bugs from previous commit · 862dab6f
  Gustaf Ahdritz authored Nov 19, 2021
  
  862dab6f
- Make more components TorchScript-able, add tracing · 34e9363c
  Gustaf Ahdritz authored Nov 19, 2021
  
  34e9363c
18 Nov, 2021 6 commits
- Standardize IPA formatting · 34e4e6ce
  Gustaf Ahdritz authored Nov 18, 2021
  
  34e4e6ce
- Update TorchScript call in inference script · 8d1119df
  Gustaf Ahdritz authored Nov 18, 2021
  
  8d1119df
- Free used recycling tensors · 326e08de
  Gustaf Ahdritz authored Nov 18, 2021
  
  326e08de
- Update name of file in Dockerfile · a7e631cc
  Gustaf Ahdritz authored Nov 18, 2021
  
  a7e631cc
- Move TorchScript utils · f63f2f6e
  Gustaf Ahdritz authored Nov 17, 2021
  
  f63f2f6e
- Add documentation to affine_utils · d3acabd1
  Gustaf Ahdritz authored Nov 17, 2021
  
  d3acabd1
17 Nov, 2021 1 commit
- Adding a banner image to the repo's README · 99e35628
  Sachin Kadyan authored Nov 17, 2021
  
  99e35628
16 Nov, 2021 3 commits
- Correct wording in README · e3362f92
  Gustaf Ahdritz authored Nov 16, 2021
  
  e3362f92
- Replace time.time() with time.perf_counter() · 5a928b47
  Gustaf Ahdritz authored Nov 16, 2021
  
  5a928b47
- Fix circular import · 0567d99c
  Gustaf Ahdritz authored Nov 16, 2021
  
  0567d99c
15 Nov, 2021 15 commits
- Fix some setup files · 89850f4b
  Gustaf Ahdritz authored Nov 15, 2021
  
  89850f4b
- Fix bug in training script · 41c68b1e
  Gustaf Ahdritz authored Nov 15, 2021
  
  41c68b1e
- Appease flake8 around importlib import · 1d657f55
  Gustaf Ahdritz authored Nov 15, 2021
  
  1d657f55
- Add warning to test utils script · 94d890d8
  Gustaf Ahdritz authored Nov 15, 2021
  
  94d890d8
- Fix bug in alignment precomputation script · 6e5c619c
  Gustaf Ahdritz authored Nov 15, 2021
  
  6e5c619c
- Fix another data module bug · dde7e6c4
  Gustaf Ahdritz authored Nov 15, 2021
  
  dde7e6c4
- Fix bug in data module · 33519974
  Gustaf Ahdritz authored Nov 15, 2021
  
  33519974
- Merge pull request #7 from cclauss/patch-1 · c46e97ca
  Gustaf Ahdritz authored Nov 15, 2021
```
GitHub Action to find undefined names in Python code
```
  c46e97ca
- Fix bug in affine_utils.py · d01f47af
  Gustaf Ahdritz authored Nov 15, 2021
  
  d01f47af
- Remove Tensorflow · f0655122
  Christian Clauss authored Nov 15, 2021
  
  f0655122
- Remove extraneous citation recommendation · 3d2a5c69
  Gustaf Ahdritz authored Nov 15, 2021
  
  3d2a5c69
- Remove vestigial function · 1d7dc67c
  Gustaf Ahdritz authored Nov 15, 2021
  
  1d7dc67c
- Undefined name: import logging for line 1499 · 7a896378
  Christian Clauss authored Nov 15, 2021
  
  7a896378
- from openfold.np import protein for line 204 · 7479daf5
  Christian Clauss authored Nov 15, 2021
  
  7479daf5
- Undefined name: import MultipleChainsError for line 439 · 6812dd3c
  Christian Clauss authored Nov 15, 2021
  
  6812dd3c