Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in / Register
Toggle navigation
Menu
Open sidebar
OpenDAS
OpenFold
Commits
0ddf27a9
Unverified
Commit
0ddf27a9
authored
Nov 19, 2021
by
Gustaf Ahdritz
Committed by
GitHub
Nov 19, 2021
Browse files
Update README.md
parent
a1dbbe9c
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
with
2 additions
and
2 deletions
+2
-2
README.md
README.md
+2
-2
No files found.
README.md
View file @
0ddf27a9
...
@@ -8,7 +8,7 @@ A faithful PyTorch reproduction of DeepMind's
...
@@ -8,7 +8,7 @@ A faithful PyTorch reproduction of DeepMind's
## Features
## Features
OpenFold carefully reproduces (almost) all of the features of the original open
OpenFold carefully reproduces (almost) all of the features of the original open
source inference code (v
.
2.0.1). The sole exception is model ensembling, which
source inference code (v2.0.1). The sole exception is model ensembling, which
fared poorly in DeepMind's own ablation testing and is being phased out in future
fared poorly in DeepMind's own ablation testing and is being phased out in future
DeepMind experiments. It is omitted here for the sake of reducing clutter. In
DeepMind experiments. It is omitted here for the sake of reducing clutter. In
cases where the
*Nature*
paper differs from the source, we always defer to the
cases where the
*Nature*
paper differs from the source, we always defer to the
...
@@ -217,7 +217,7 @@ The script is a thin wrapper around Python's `unittest` suite, and recognizes
...
@@ -217,7 +217,7 @@ The script is a thin wrapper around Python's `unittest` suite, and recognizes
scripts/run_unit_tests.sh
-v
tests.test_model
scripts/run_unit_tests.sh
-v
tests.test_model
```
```
Certain tests require that AlphaFold (v
.
2.0.1) be installed in the same Python
Certain tests require that AlphaFold (v2.0.1) be installed in the same Python
environment. These run components of AlphaFold and OpenFold side by side and
environment. These run components of AlphaFold and OpenFold side by side and
ensure that output activations are adequately similar. For most modules, we
ensure that output activations are adequately similar. For most modules, we
target a maximum difference of
`1e-4`
.
target a maximum difference of
`1e-4`
.
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment