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Commit bc35ef17 authored by Geoffrey Yu's avatar Geoffrey Yu
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fixed the confilcts in reading alignment files

parent 43bab151
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openfold/data/data_pipeline.py
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...@@ -831,9 +831,8 @@ class DataPipeline: ...@@ -831,9 +831,8 @@ class DataPipeline:
with open(path, "r") as fp: with open(path, "r") as fp:
hits = parsers.parse_hhr(fp.read()) hits = parsers.parse_hhr(fp.read())
all_hits[f] = hits all_hits[f] = hits
fp.close()
elif (ext =='.sto') and (f.startswith("pdb")): elif (ext =='.sto') and (f.startswith("hmm")):
with open(path,"r") as fp: with open(path,"r") as fp:
hits = parsers.parse_hmmsearch_sto(fp.read(),input_sequence) hits = parsers.parse_hmmsearch_sto(fp.read(),input_sequence)
all_hits[f] = hits all_hits[f] = hits
......
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