fixed the confilcts in reading alignment files

bc35ef17 · Geoffrey Yu · 43bab151 · bc35ef17
Commit bc35ef17 authored Aug 03, 2023 by Geoffrey Yu
Show whitespace changes
Inline Side-by-side

Showing with 1 addition and 2 deletions

openfold/data/data_pipeline.py openfold/data/data_pipeline.py +1 -2

No files found.
--- a/openfold/data/data_pipeline.py
+++ b/openfold/data/data_pipeline.py
@@ -831,9 +831,8 @@ class DataPipeline:
                    with open(path, "r") as fp:
                        hits = parsers.parse_hhr(fp.read())
                    all_hits[f] = hits
-                    fp.close()
                    
-                elif (ext =='.sto') and (f.startswith("pdb")):
+                elif (ext =='.sto') and (f.startswith("hmm")):
                    with open(path,"r") as fp:
                        hits = parsers.parse_hmmsearch_sto(fp.read(),input_sequence)
                    all_hits[f] = hits