Skip to content

GitLab

"git@developer.sourcefind.cn:OpenDAS/openfold.git" did not exist on "6c5cd945bd9dec3282ab8f472c3eefeab0f8efb3"
Commit bc35ef17 authored by Geoffrey Yu's avatar Geoffrey Yu
Browse files

fixed the confilcts in reading alignment files

parent 43bab151
Hide whitespace changes
Inline Side-by-side
Showing with 1 addition and 2 deletions
openfold/data/data_pipeline.py
View file @ bc35ef17
...@@ -831,9 +831,8 @@ class DataPipeline: ...@@ -831,9 +831,8 @@ class DataPipeline:
with open(path, "r") as fp: with open(path, "r") as fp:
hits = parsers.parse_hhr(fp.read()) hits = parsers.parse_hhr(fp.read())
all_hits[f] = hits all_hits[f] = hits
fp.close()
elif (ext =='.sto') and (f.startswith("pdb")): elif (ext =='.sto') and (f.startswith("hmm")):
with open(path,"r") as fp: with open(path,"r") as fp:
hits = parsers.parse_hmmsearch_sto(fp.read(),input_sequence) hits = parsers.parse_hmmsearch_sto(fp.read(),input_sequence)
all_hits[f] = hits all_hits[f] = hits
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment