Commits · 4ec8f204dd8ff7044818db3493ce898dc945aa72 · OpenDAS / dgl

"docs/vscode:/vscode.git/clone" did not exist on "d5cb0be2cd16e6c5eefd4d266a38357fde83a660"

05 Mar, 2020 2 commits

Update (#1319) · 4ec8f204
Mufei Li authored Mar 05, 2020

4ec8f204

[Refactor] Unify DGLGraph, BatchedDGLGraph and DGLSubGraph (#1216) · 93ac29ce

Zihao Ye authored Mar 05, 2020



* upd

* upd

* upd

* lint

* fix

* fix test

* fix

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd tutorial

* upd

* upd

* fix kg

* upd doc organization

* refresh test

* upd

* refactor doc

* fix lint
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>

93ac29ce

04 Mar, 2020 1 commit
- fix s3 link (#1310) · c23a61bd
  Jinjing Zhou authored Mar 04, 2020
  
  c23a61bd
24 Feb, 2020 1 commit
- [BUG] Fixes #1262 (#1286) · b05cb84a
  Quan (Andy) Gan authored Feb 24, 2020
  
  b05cb84a
23 Feb, 2020 1 commit

[KVStore] Small fix on kvstore (#1284) · ddf8c858

Chao Ma authored Feb 23, 2020

* update

* str to int

* update

* update

* update

* test remove sync

* update

* update

* update

* update

* update

* update

* update

* update

* clear

ddf8c858

17 Feb, 2020 1 commit

[KVStore] New kvstore used by DGL-KE (#1263) · b133abb8

Chao Ma authored Feb 17, 2020

* new kvstore

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* test warning

* update

* update

* udpate

* update

* update

* update

* update

* small fix

* small fix

* get group count

* update

* update

* make file

* update

* use addr

* get id

* partition book

* update

* partition

* barrier

* update

* loop count

* update

* update

* update

* update

* update

* update

* update

* update

* update

* add mxnet demo

* update ip

* update

* update

* update

* random

* update

* update

* update

* update

* update

* update

* fix lint

* fix lint

* fix lint

b133abb8

13 Feb, 2020 1 commit
- [Bugfix] Correct the loss function in RGCN model (#1217) · 7a80faf1
  Zihao Ye authored Feb 13, 2020
```
* upd

* upd

* fix
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
```
  7a80faf1
08 Feb, 2020 1 commit
- [DGL-LifeSci] Fix broken links (#1248) · 3f0c1005
  Mufei Li authored Feb 08, 2020
```
* Fix

* Update
```
  3f0c1005
07 Feb, 2020 1 commit

[Example] Fix Rgcn hetero nonedetermistic in graph and model initialization (#1244) · 77ae4d53

xiang song(charlie.song) authored Feb 07, 2020

* Fix model save and load problem.

Add offline inference example

* Fix test

* Fix randomness problem between test runs

* Make rdf loader deterministic

77ae4d53

03 Feb, 2020 1 commit

[DGL-LifeSci] Migration and Refactor (#1226) · 828a5e5b

Mufei Li authored Feb 04, 2020

* First commit

* Update

* Update splitters

* Update

* Update

* Update

* Update

* Update

* Update

* Migrate ACNN

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Finish classification

* Update

* Fix

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Update

* Update

* Update

* trigger CI

* Fix CI

* Update

* Update

* Update

* Add default values

* Rename

* Update deprecation message

828a5e5b

31 Jan, 2020 1 commit

[Feature] Random Walk for 0.5 (#1209) · a9dabcc7

Quan (Andy) Gan authored Jan 31, 2020

* trying to refactor IndexSelect

* partial implementation

* add index select and assign for floats as well

* move to random choice source

* more updates

* fixes

* fixes

* more fixes

* adding python impl

* fixes

* unit test

* lint

* lint x2

* lint x3

* update metapath2vec

* debugging performance

* still debugging for performance

* tuning

* switching to succvec

* redo

* revert non-uniform sampler to use vector

* still not fast

* why does this crash with OpenMP???

* because there was a data race!!!

* add documentations and remove assign op

* lint

* lint x2

* lol what have i done

* lint x3

* fix and disable gpu testing

* bugfix

* generic random walk

* reorg the random walk source code

* Update randomwalks.h

* Update randomwalks_cpu.cc

* rename file

* move internal function to anonymous ns

* reorg & docstrings

* constant restart probability

* docstring fix

* more commit

* random walk with restart, tested

* some fixes

* switch to using NDArray for choice

* massive fix & docstring

* lint x?

* lint x??

* fix

* export symbols

* skip gpu test

* addresses comments

* replaces another VecToIdArray

* add randomwalks.h to include

* replace void * with template

a9dabcc7

19 Jan, 2020 1 commit

[Tensorflow] Several nn & example (#1191) · a00636a0

VoVAllen authored Jan 19, 2020

* several nn example

* appnp

* fix lint

* lint

* add dgi

* fix

* fix

* fix

* fff

* docs

* 111

* fix

* change init

* change result

* tiaocan+1

* fix

* fix lint

* fix

* fix

a00636a0

09 Jan, 2020 2 commits
- Update README.md (#1184) · 3d664628
  Quan (Andy) Gan authored Jan 09, 2020
  
  3d664628
- [BUG] Fix MovieLens feature assignment (#1183) · bfc2d303
  Quan (Andy) Gan authored Jan 09, 2020
```
Fixes #1182 .

This is embarrassing.
```
  bfc2d303
06 Jan, 2020 1 commit
- some comments (#1132) · e705118b
  Quan (Andy) Gan authored Jan 06, 2020
  
  e705118b
30 Dec, 2019 2 commits

[KVStore] Reduce memory cost of kvstore (#1156) · 6731ea3a

Chao Ma authored Dec 30, 2019

* API change of kvstore

* add demo for kvstore

* update

* remove duplicated log

* change queue size

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* change name

* update

* fix lint

* update

* update

* update

* update

* change message queue size to a python argument

* change default queue size to 2GB

* OMP_NUM_THREADS=1

* add multiple NICs support for kvstore

* test

* fix lint

* update

* update

* update

* update

* update

* update

* update

* fix lint

* fix lint

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

6731ea3a

[KVStore] Made kvstore can support multiple NICs (#1150) · 4f02bb75

Chao Ma authored Dec 30, 2019

* API change of kvstore

* add demo for kvstore

* update

* remove duplicated log

* change queue size

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* change name

* update

* fix lint

* update

* update

* update

* update

* change message queue size to a python argument

* change default queue size to 2GB

* OMP_NUM_THREADS=1

* add multiple NICs support for kvstore

* test

* fix lint

* update

* update

* update

* update

* update

* update

* update

* fix lint

* fix lint

* update

* update

* update

* update

4f02bb75

25 Dec, 2019 1 commit

[Small Fix] Change default message queue size of communicator to 2GB (#1140) · d57ff78d

Chao Ma authored Dec 25, 2019

* API change of kvstore

* add demo for kvstore

* update

* remove duplicated log

* change queue size

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* change name

* update

* fix lint

* update

* update

* update

* update

* change message queue size to a python argument

* change default queue size to 2GB

* OMP_NUM_THREADS=1

d57ff78d

24 Dec, 2019 1 commit

[KVStore] API change of kvstore (#1058) · e4ef8d1a

Chao Ma authored Dec 24, 2019

* API change of kvstore

* add demo for kvstore

* update

* remove duplicated log

* change queue size

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* change name

* update

* fix lint

* update

* update

* update

* update

* change message queue size to a python argument

e4ef8d1a

23 Dec, 2019 1 commit
- [Doc] Hotfix for README (#1119) · 2ab4d0e1
  Mufei Li authored Dec 23, 2019
  
  2ab4d0e1
19 Dec, 2019 1 commit

[Chem] ACNN and various utilities (#1117) · cf9ba90f

Mufei Li authored Dec 19, 2019

* Add several splitting methods

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Finally

* CI

cf9ba90f

14 Dec, 2019 2 commits
- Fixed the training file (#1109) · 2448751c
  naveen marri authored Dec 14, 2019
  
  2448751c
- [Example] GCMC in PyTorch (#1101) · d16fb3ff
  Zihao Ye authored Dec 14, 2019
```
* upd

* fix

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd
```
  d16fb3ff
05 Dec, 2019 1 commit
- [Chem Model Zoo] Hot fix for README (#1071) · bc4f4352
  Mufei Li authored Dec 05, 2019
```
* Fix outdated example

* Hot fix
```
  bc4f4352
04 Dec, 2019 1 commit

[Example] add graphwriter pytorch example (#1068) · fff3dd95

Guo Qipeng authored Dec 05, 2019

* upd

* fig edgebatch edges

* add test

* trigger

* add graphwriter pytorch example

* fix line break in graphwriter README

* upd

* fix

fff3dd95

30 Nov, 2019 1 commit
- [Hotfix] Fix GAT example and clarify the usage of early stop (#1065) · fdc58a89
  Zihao Ye authored Nov 30, 2019
```
* upd

* rm redundancy:

* upd
```
  fdc58a89
26 Nov, 2019 2 commits

fix minor error: GCNLayerSAGE->GraphSAGELayer (#1010) · dca2580b
shizhediao authored Nov 27, 2019
```
fix minor error: GCNLayerSAGE->GraphSAGELayer
```
dca2580b

[Example] Finish adaptive sampling (#998) · 85c9ff01

xuyou314 authored Nov 25, 2019

* [Example] Finish adaptive sampling

* refactor code and use argparse for command-line usage

* Update README.md

* add node_per_layer command-line argument

85c9ff01

13 Nov, 2019 1 commit
- Make print of GCN example of mxnet and pytorch exact same. (#994) · 1915fdb9
  xiang song(charlie.song) authored Nov 13, 2019
  
  1915fdb9
08 Nov, 2019 1 commit
- Small change for kvstore api (#981) · a0193fd5
  Chao Ma authored Nov 08, 2019
```
* Small change for kvstore api

* fix ci

* fix ci
```
  a0193fd5
05 Nov, 2019 1 commit
- add init api on kvserver (#975) · 7897fa3b
  Chao Ma authored Nov 05, 2019
  
  7897fa3b
04 Nov, 2019 2 commits
- [kvstore] Performance improvement for distributed kvstore (#972) · cccde032
  Chao Ma authored Nov 04, 2019
```
* Performance improvment for distributed kvstore

* update

* update
```
  cccde032
- hotfix (#971) · fdd0fe65
  Zihao Ye authored Nov 04, 2019
  
  fdd0fe65
03 Nov, 2019 1 commit

[NN] nn modules & examples update (#890) · 9a0511c8

Zihao Ye authored Nov 04, 2019

* upd

* damn it

* fuck

* fuck pylint

* fudge

* remove some comments about MXNet

* upd

* upd

* damn it

* damn it

* fuck

* fuck

* upd

* upd

* pylint bastard

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

9a0511c8

30 Oct, 2019 1 commit

[Bug Fix] Fix package reliability bug of networkx (#949) · 82499e60

xiang song(charlie.song) authored Oct 30, 2019

* upd

* fig edgebatch edges

* add test

* trigger

* Update README.md for pytorch PinSage example.

Add noting that the PinSage model example under
example/pytorch/recommendation only work with Python 3.6+
as its dataset loader depends on stanfordnlp package
which work only with Python 3.6+.

* Provid a frame agnostic API to test nn modules on both CPU and CUDA side.

1. make dgl.nn.xxx frame agnostic
2. make test.backend include dgl.nn modules
3. modify test_edge_softmax of test/mxnet/test_nn.py and
    test/pytorch/test_nn.py work on both CPU and GPU

* Fix style

* Delete unused code

* Make agnostic test only related to tests/backend

1. clear all agnostic related code in dgl.nn
2. make test_graph_conv agnostic to cpu/gpu

* Fix code style

* fix

* doc

* Make all test code under tests.mxnet/pytorch.test_nn.py
work on both CPU and GPU.

* Fix syntex

* Remove rand

* Add TAGCN nn.module and example

* Now tagcn can run on CPU.

* Add unitest for TGConv

* Fix style

* For pubmed dataset, using --lr=0.005 can achieve better acc

* Fix style

* Fix some descriptions

* trigger

* Fix doc

* Add nn.TGConv and example

* Fix bug

* Update data in mxnet.tagcn test acc.

* Fix some comments and code

* delete useless code

* Fix namming

* Fix bug

* Fix bug

* Add test for mxnet TAGCov

* Add test code for mxnet TAGCov

* Update some docs

* Fix some code

* Update docs dgl.nn.mxnet

* Update weight init

* Fix

* reproduce the bug

* Fix concurrency bug reported at #755.
Also make test_shared_mem_store.py more deterministic.

* Update test_shared_mem_store.py

* Update dmlc/core

* networkx >= 2.4 will break our examples

* Update tutorials/requirements

* fix selfloop edges

* upd version

82499e60

29 Oct, 2019 2 commits
- [Cleanup] Change Byte to Bool for training masks (#954) · 98c1448b
  Jacob Stevens authored Oct 29, 2019
```
* Change Byte to Bool for training masks

* Check if module has Bool, otherwise use Byte
```
  98c1448b
- [Misc] Update README(s) (#962) · 86cf154b
  Mufei Li authored Oct 29, 2019
```
* Update

* Update
```
  86cf154b
26 Oct, 2019 1 commit
- [Model] Clean up for Cluster GCN (#940) · 421b05e7
  Mufei Li authored Oct 26, 2019
```
* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Fix
```
  421b05e7
25 Oct, 2019 1 commit
- [Model Zoo] AttentiveFP (#955) · 52c7ef49
  Mufei Li authored Oct 26, 2019
```
* Update

* Fix style

* Update

* Update

* Fix

* Update

* Update
```
  52c7ef49
21 Oct, 2019 1 commit
- [Model Zoo] Refactor and Add Utils for Chemistry (#928) · 577cf2e6
  Mufei Li authored Oct 22, 2019
```
* Refactor

* Add note

* Update

* CI
```
  577cf2e6