GitLab

[Feature] ARGO: an easy-to-use runtime to improve GNN training performance on multi-core processors (#7003)
Co-authored-by: Andrzej Kotłowski <Andrzej.Kotlowski@intel.com>
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>

Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>

Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>

* hgnn example

* desc

* update example index

* address

* replace naming

* address comments

* initial completion

* add binary version of pointnet and pointnet++

* add binary version of pointnet and pointnet++

* add binary version of pointnet and pointnet++

* add binary version of pointnet and pointnet++

* add binary version of pointnet and pointnet++

* finish README

* fix suggestions

* fix suggestions

* fix suggestions

* solve details

* resolve formatting issues

* add accuracy

* revert the changes
Co-authored-by: Tong He <hetong007@gmail.com>
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

* [Example] SEAL for OGBL

* update index

* update

* fix readme typo

* add seal sampler

* modify set ops

* prefetch

* efficiency test

* update

* optimize

* fix ScatterAdd dtype issue

* update sampler style

* update
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* version-1

* version-2

* version-3

* update examples/README

* Update .gitignore

* update performance in README, delete scripts

* 1st approving review

* 2nd approving review
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* NGNN for ogbl

* modify doc organization.

* merge similar parts

* 1st approving review.

* minor changes

* Remove the "Usage" section.
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* rgcn-ogbn-mag

* Add link in README.md

* correct code-format,add the reset_parameters function to the HeteroEmbedding module

* add the annotation in hetero.py

* add a unit test

* modify format

* Update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-50-143.us-west-2.compute.internal>

* Add BGRL example

* Update README.md

* Update utils.py

* Update

* Update utils.py

* [Model]P-GNN

* updata

* [Example]P-GNN

* Update README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Add RNAGlib to examples and DGL-powered-projects

* Add RNAGlib to examples and DGL-powered-projects

* Add RNAGlib to examples and DGL-powered-projects

* [Model][Core] GATv2

* lint

* gatv2conv.py

* lint

* lint

* style and docs

* lint

* gatv2conv fix
Co-authored-by: Shaked Brody shakedbr@campus.technion.ac.il <shakedbr@tangerine.cslcs.technion.ac.il>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* publish pct

* add train_cls

* add readme

* update opt for point transformer

* update the example index

* update for comments
Co-authored-by: Tong He <hetong007@gmail.com>

* some modifications for pointnet2

* temporarily save changes

* move files to new directory point_transformer

* implement point transformer for classification

* restore train_cls in pointnet

* implement point transformer for partseg

* fix point transformer for nan loss

* modify point transformer for cls

* modify training setting

* update transformer for cls

* update code

* update code for latest performance

* update the example index

* some minor changes
Co-authored-by: Tong He <hetong007@gmail.com>

* Create EEG-GCNN example.

* Update README.md

* Remove gitignore file.

* Update README.md

* change 'datas' to 'datasets'.

* Change train.py to main.py

* Added an entry in the indexing page.

* State "simplified version"; change how to run.

* Fix bug in contact

* Remove paper link in reference.

* Create working branch

* Add normalization of x.

* Update paper link and tags

* Update paper link in readme

* Update readme; add patient level indices

* Update readme. Add comments to models

* Update README.md

* change to with; specify location for ch and el; move note

* fix bug for note

* Add args for models; clean code.

* delete = in readme

* Add reference for spec_coh_values

* [model] add model example GeniePath

* improvements based on feedback

* improvements based on feedback
Co-authored-by: zhjwy9343 <6593865@qq.com>

* [Model] add model example CARE-GNN

* update README

* improvements based on the review feedback

* fix missing item()
Co-authored-by: zhjwy9343 <6593865@qq.com>

* add model example GCN-based Anti-Spam

* update example index

* add usage info

* improvements as per comments

* fix image invisiable problem

* add image file
Co-authored-by: zhjwy9343 <6593865@qq.com>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* add hilander model implementation draft

* use focal loss

* fix

* change data root

* add necessary scripts

* update download links

* update

* update example table

* fix

* update readme with numbers

* add empty folder

* only eval at the end

* set up hilander

* inform results may fluctuate

* address comments
Co-authored-by: sneakerkg <xiaotj1990327@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-212.us-east-2.compute.internal>

* commit hetgnn

* Update README.md

* Delete examples/pytorch/hetgnn directory

* Update README.md

* Update README.md

* Update README.md

* Revert "Update README.md"

This reverts commit 14cdb3da76c58665ff879eae17ecf9eb28b66cce.

* Update README.md

* Add files via upload

* Update README.md

* Update README.md

* tahin

* readme

* readme

* readme

* readme

* readme

* readme

* main

* main

* new_line

* update
Co-authored-by: zhjwy9343 <6593865@qq.com>

* add lda model

* tweak latent dirichlet allocation

* Update README.md

* Update README.md

* update example index

* update header

* minor tweak

* add example test

* update doc

* Update README.md

* Update README.md

* add partial_fit for free

* Update examples/pytorch/lda/lda_model.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update examples/pytorch/lda/example_20newsgroups.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update lda_model.py

* bugfix torch Gamma uses rate parameter
Co-authored-by: Yifei Ma <yifeim@amazon.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* [example] label propagation and correct&smooth

* update

* update

* update

* update

* [docs] add speed for c&s

* update

* [fix] remove gat&consistent with the author's code

* [feat] multi-type adj norm supported

* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [Example] add implementation of grace

* [Doc] add grace in the index file

* fix

* fix typos
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [example] deepergcn

* update

* update

* update

* update

* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Ready for PR

* refractor code
Co-authored-by: Ubuntu <ubuntu@ip-172-31-45-47.ap-northeast-1.compute.internal>
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>

* Update README.md

Add description of RECT

* [Example] Add implementation of RECT

[Example] Add implementation of RECT

* Update classify.py

Modify the class names and the function names mentioned above

* Update main.py

Modify the function names mentioned above

* Update label_utils.py

Adjust the comments

* Update README.md

Add the github information
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>

* Add hgat example

* Add experiment

* Clean code

* clear the code

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Change the code title and folder name

* Ready to merge

* Prepare for rebase and change message passing function

* use git ignore to handle empty file

* change file permission to resolve empty file

* Change permission

* change file mode

* Finish Coding

* working code cpu

* pyg compare

* Accelerate with batching

* FastMode Enabled

* update readme

* Update README.md

* refractor code

* add graphsim code

* modified code

* few fix

* Modified graphsim

* Simple Model Added

* Clean up code

* Refractor the code for Merge

* Bugfix enable gradient when train

* update readme and format
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com>
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-4-63.ap-northeast-1.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-45-47.ap-northeast-1.compute.internal>

* [example] jknet

* update

* update

* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Add BGNN example

* Update bgnn example

* Remove uncessary files

* update model index

* style fix

* Add Readme for BGNN example

* Update documentation; remove preprocessing
Co-authored-by: s.ivanov <s.ivanov@mesos-slave080-am6.central.criteo.prod>
Co-authored-by: s.ivanov <s.ivanov@mesos-slave150-am6.central.criteo.prod>
Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: s.ivanov <s.ivanov@mesos-slave148-am6.central.criteo.prod>
Co-authored-by: s.ivanov <s.ivanov@mesos-slave078-am6.central.criteo.prod>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* compgcn

* readme

* readme

* update

* readme
Co-authored-by: zhjwy9343 <6593865@qq.com>

* Add hgat example

* Add experiment

* Clean code

* clear the code

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Change the code title and folder name

* Ready to merge

* Prepare for rebase and change message passing function

* use git ignore to handle empty file

* change file permission to resolve empty file

* Change permission

* change file mode

* Finish Coding

* working code cpu

* pyg compare

* Accelerate with batching

* FastMode Enabled

* update readme

* Update README.md

* refractor code

* Fix Bug

* add a simple temporal sampling method

* test results

* add train speed result

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* fix bug

* Fixed Grammar and Format Issue
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com>
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-4-63.ap-northeast-1.compute.internal>
Co-authored-by: WangXuhongCN <wangxuhongcn@163.com>
Co-authored-by: WangXuhongCN <34096632+WangXuhongCN@users.noreply.github.com>

* [Example ]add mvgrl

* [Doc] add mvgrl to readme

* add more comments

* fix typos

* replace tab with space

* [doc] replace tab with space

* [Doc] fix a typo

* fix minor typos

* fix typos

* fix typos

* fix typos

* fix typos

* fix
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* gnn-explainer

* gnn-explainer

* gnn-explainer

* gnn-explainer

* fix

* fix

* fix

* readme

* readme
Co-authored-by: zhjwy9343 <6593865@qq.com>

* [example] arma

* update

* update

* update

* update

* update

* [example] dimenet

* [docs] update dimenet

* [docs] update tf results

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Add implementation of unsupervised model

* [Doc] Update Implementor's information

* [doc] add index of infograph

* [Feature] QM9_v2 Dataset Support

* fix a typo

* move qm9dataset from data to examples

* Update qm9_v2.py

* Infograph -> InfoGraph

* add implementation and results of semi-supervised model

* Update README.md

* Update README.md

* fix a typo

* Remove the duplicated links.

* fix some typos

* fix typos

* update model.py

* update collate fn

* remove unused functions

* Update model.py

* add device option

* Update evaluate_embedding.py

* Update evaluate_embedding.py

* Update unsupervised.py

* Fix typos

* fix bugs

* Update README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [Example]Variational Graph Auto-Encoders

* change dgl dataset to single directional graph

* clean code

* refresh
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>