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Minor optimizations to CPU platform

More fixes for problems on OS X 10.9

Enforce memory alignment to improve performance of vector operations.  Also fixed bugs in an earlier optimization.

Enforce memory alignment to improve performance of vector operations.  Also fixed bugs in an earlier optimization.

Optimizations to CPU nonbonded forces: better load balancing between threads, use linear splines instead of cubic

Optimizations to CPU nonbonded forces: better load balancing between threads, use linear splines instead of cubic

Optimization to building neighbor list on CPU platform

Fixed bugs in computing PME energy with CPU platform

Fixed errors on OS X 10.9: link against libc++ instead of libstdc++

Added some missing virtual destructors

Fixed compilation errors on OS X 10.9

Tabulated log(x) to improve GB performance

Fixed compilation errors on gcc

Improved the geometry of hydroxyls when adding hydrogens

Optimizations to CPU version of GBSA

Moved benchmarking script into main repository

Created optimized CPU version of GBSAOBCForce

include what you use

Skip all /internal directories when building Python wrappers.

Skip all /internal directories when building Python wrappers.  This allows the configuration file to be simplified.