Skip all /internal directories when building Python wrappers. This allows the...

Skip all /internal directories when building Python wrappers.  This allows the configuration file to be simplified.

wrappers/python/src/swig_doxygen/doxygen/Doxyfile.in

@@ -616,6 +616,7 @@ EXCLUDE_SYMLINKS       = NO
 
 EXCLUDE_PATTERNS       = */tests/* \
                          */openmmapi/src/* \
+                         */internal/* \
                          */.svn/* \
                          *OpenMMFortranModule.f90 \
                          *OpenMMCWrapper.h

wrappers/python/src/swig_doxygen/swigInputConfig.py

@@ -14,20 +14,7 @@ DOC_STRINGS = {("Context", "setPositions") :
 # Do not generate wrappers for the following methods.
 # Indexed by (className, [methodName [, numParams]])
 SKIP_METHODS = [('State',),
-                ('Stream',),
                 ('Vec3',),
-                ('AmoebaGeneralizedKirkwoodForceImpl',),
-                ('AmoebaAngleForceImpl',),
-                ('AmoebaBondForceImpl',),
-                ('AmoebaInPlaneAngleForceImpl',),
-                ('AmoebaMultipoleForceImpl',),
-                ('AmoebaOutOfPlaneBendForceImpl',),
-                ('AmoebaPiTorsionForceImpl',),
-                ('AmoebaStretchBendForceImpl',),
-                ('AmoebaTorsionTorsionForceImpl',),
-                ('AmoebaVdwForceImpl',),
-                ('AmoebaWcaDispersionForceImpl',),
-                ('AndersenThermostatImpl',),
                 ('AngleInfo',),
                 ('ApplyAndersenThermostatKernel',),
                 ('ApplyConstraintsKernel',),
@@ -63,30 +50,14 @@ SKIP_METHODS = [('State',),
                 ('CalcNonbondedForceKernel',),
                 ('CalcPeriodicTorsionForceKernel',),
                 ('CalcRBTorsionForceKernel',),
-                ('CMAPTorsionForceImpl',),
-                ('CMMotionRemoverImpl',),
                 ('ComputationInfo',),
                 ('ConstraintInfo',),
-                ('ContextImpl',),
                 ('CudaKernelFactory',),
                 ('CudaStreamFactory',),
-                ('CustomAngleForceImpl',),
-                ('CustomBondForceImpl',),
-                ('CustomCompoundBondForceImpl',),
-                ('CustomExternalForceImpl',),
-                ('CustomGBForceImpl',),
-                ('CustomHbondForceImpl',),
-                ('CustomNonbondedForceImpl',),
-                ('CustomTorsionForceImpl',),
                 ('ExceptionInfo',),
                 ('ExclusionInfo',),
-                ('ForceImpl',),
                 ('FunctionInfo',),
-                ('GBSAOBCForceImpl',),
-                ('GBVIForceImpl',),
                 ('GlobalParameterInfo',),
-                ('HarmonicAngleForceImpl',),
-                ('HarmonicBondForceImpl',),
                 ('InitializeForcesKernel',),
                 ('IntegrateBrownianStepKernel',),
                 ('IntegrateLangevinStepKernel',),
@@ -97,24 +68,18 @@ SKIP_METHODS = [('State',),
                 ('Kernel',),
                 ('KernelFactory',),
                 ('KernelImpl',),
-                ('MonteCarloBarostatImpl',),
-                ('MonteCarloAnisotropicBarostatImpl',),
                 ('MultipoleInfo',),
-                ('NonbondedForceImpl',),
                 ('OutOfPlaneBendInfo',),
                 ('ParameterInfo',),
                 ('ParticleInfo',),
-                ('PeriodicTorsionForceImpl',),
                 ('PeriodicTorsionInfo',),
                 ('PerParticleParameterInfo',),
                 ('PiTorsionInfo',),
                 ('PlatformData',),
-                ('RBTorsionForceImpl',),
                 ('RBTorsionInfo',),
                 ('RemoveCMMotionKernel',),
                 ('SplineFitter',),
                 ('StreamFactory',),
-                ('StreamImpl',),
                 ('StretchBendInfo',),
                 ('TorsionInfo',),
                 ('TorsionTorsionGridInfo',),
@@ -139,14 +104,11 @@ SKIP_METHODS = [('State',),
                 ('Platform', 'registerKernelFactory'),
                 ('IntegrateRPMDStepKernel',),
                 ('RPMDIntegrator',  'getState'),
-                ('DrudeForceImpl',),
                 ('CalcDrudeForceKernel',),
                 ('IntegrateDrudeLangevinStepKernel',),
                 ('IntegrateDrudeSCFStepKernel',),
                 ('XmlSerializer',  'serialize'),
                 ('XmlSerializer',  'deserialize'),
-                ('fvec4',),
-                ('ivec4',),
 ]
 
 # The build script assumes method args that are non-const references are