GitLab

Moved AMOEBA include files to plugins/amoeba/openmmapi/include/openmm to be consistent w/ outlay other plugins, ...

Added diagnostics for handling reorder of atoms

Added support for missing axis types (Cuda only)
Removed rotationMatrix

Removal SASA code
Versioning introduced in AmoebaTinkerParameterFile
Decomposition of PME forces included in prm files 

Added checks for nonbonded methods
Removed unused functionality from GK force
Moved non-accessor methods from Force classes to ForceImpl classes

An exception is now thrown if the multipole axis type is not Bisector or Z-then-X
Redid velocity initialization in test code

Refactored ForceImpl, lots of KernelImpl subclasses, and other related classes to avoid redundant calculations when requesting a State with both forces and energies

Removed cubic/quartic per-atom parameters from AmoebaHarmonicBondForce