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tsoc
openmm
Commits
b90e80ff
Commit
b90e80ff
authored
Jan 07, 2011
by
Mark Friedrichs
Browse files
Renamed OpenMMAmoeba,h to AmoebaOpenMM for consistency w/ other plugin
parent
8928a337
Changes
89
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20 changed files
with
23 additions
and
24 deletions
+23
-24
plugins/amoeba/openmmapi/include/OpenMMAmoeba.h
plugins/amoeba/openmmapi/include/OpenMMAmoeba.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaHarmonicAngleForce.h
...moeba/openmmapi/include/openmm/AmoebaHarmonicAngleForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaHarmonicBondForce.h
...amoeba/openmmapi/include/openmm/AmoebaHarmonicBondForce.h
+2
-3
plugins/amoeba/openmmapi/include/openmm/AmoebaHarmonicInPlaneAngleForce.h
...penmmapi/include/openmm/AmoebaHarmonicInPlaneAngleForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h
...ns/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaOutOfPlaneBendForce.h
...oeba/openmmapi/include/openmm/AmoebaOutOfPlaneBendForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaPiTorsionForce.h
...ns/amoeba/openmmapi/include/openmm/AmoebaPiTorsionForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaStretchBendForce.h
.../amoeba/openmmapi/include/openmm/AmoebaStretchBendForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionForce.h
plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h
...oeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaUreyBradleyForce.h
.../amoeba/openmmapi/include/openmm/AmoebaUreyBradleyForce.h
+2
-2
plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h
plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h
...moeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/amoebaKernels.h
plugins/amoeba/openmmapi/include/openmm/amoebaKernels.h
+2
-2
plugins/amoeba/openmmapi/include/openmm/internal/AmoebaHarmonicAngleForceImpl.h
...pi/include/openmm/internal/AmoebaHarmonicAngleForceImpl.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/internal/AmoebaHarmonicBondForceImpl.h
...api/include/openmm/internal/AmoebaHarmonicBondForceImpl.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/internal/AmoebaHarmonicInPlaneAngleForceImpl.h
...ude/openmm/internal/AmoebaHarmonicInPlaneAngleForceImpl.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/internal/AmoebaMultipoleForceImpl.h
...nmmapi/include/openmm/internal/AmoebaMultipoleForceImpl.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/internal/AmoebaOutOfPlaneBendForceImpl.h
...i/include/openmm/internal/AmoebaOutOfPlaneBendForceImpl.h
+1
-1
plugins/amoeba/openmmapi/include/openmm/internal/AmoebaPiTorsionForceImpl.h
...nmmapi/include/openmm/internal/AmoebaPiTorsionForceImpl.h
+1
-1
No files found.
plugins/amoeba/openmmapi/include/
Amoeba
OpenMM.h
→
plugins/amoeba/openmmapi/include/OpenMM
Amoeba
.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define AMOEBA_OPENMM_H_
#define AMOEBA_OPENMM_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaHarmonicAngleForce.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_HARMONIC_ANGLE_FORCE_H_
#define OPENMM_AMOEBA_HARMONIC_ANGLE_FORCE_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaHarmonicBondForce.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_HARMONIC_BOND_FORCE_H_
#define OPENMM_AMOEBA_HARMONIC_BOND_FORCE_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
@@ -38,7 +38,6 @@
...
@@ -38,7 +38,6 @@
#include <vector>
#include <vector>
#include "openmm/internal/windowsExport.h"
#include "openmm/internal/windowsExport.h"
//namespace AmoebaOpenMM {
namespace
OpenMM
{
namespace
OpenMM
{
/**
/**
...
@@ -157,6 +156,6 @@ public:
...
@@ -157,6 +156,6 @@ public:
}
}
};
};
}
// namespace
Amoeba
OpenMM
}
// namespace OpenMM
#endif
/*OPENMM_AMOEBA_HARMONIC_BOND_FORCE_H_*/
#endif
/*OPENMM_AMOEBA_HARMONIC_BOND_FORCE_H_*/
plugins/amoeba/openmmapi/include/openmm/AmoebaHarmonicInPlaneAngleForce.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_HARMONIC_IN_PLANE_ANGLE_FORCE_H_
#define OPENMM_AMOEBA_HARMONIC_IN_PLANE_ANGLE_FORCE_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaMultipoleForce.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_MULTIPOLE_FORCE_H_
#define OPENMM_AMOEBA_MULTIPOLE_FORCE_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaOutOfPlaneBendForce.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_OUT_OF_PLANE_BEND_FORCE_H_
#define OPENMM_AMOEBA_OUT_OF_PLANE_BEND_FORCE_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaPiTorsionForce.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_PI_TORSION_FORCE_H_
#define OPENMM_AMOEBA_PI_TORSION_FORCE_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaStretchBendForce.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_STRETCH_BEND_FORCE_H_
#define OPENMM_AMOEBA_STRETCH_BEND_FORCE_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionForce.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_TORSION_FORCE_H_
#define OPENMM_AMOEBA_TORSION_FORCE_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaTorsionTorsionForce.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_TORSION_TORSION_FORCE_H_
#define OPENMM_AMOEBA_TORSION_TORSION_FORCE_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaUreyBradleyForce.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_UREY_BRADLEY_FORCE_H_
#define OPENMM_AMOEBA_UREY_BRADLEY_FORCE_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
@@ -156,6 +156,6 @@ public:
...
@@ -156,6 +156,6 @@ public:
}
}
};
};
}
// namespace
Amoeba
OpenMM
}
// namespace OpenMM
#endif
/*OPENMM_AMOEBA_UREY_BRADLEY_FORCE_H_*/
#endif
/*OPENMM_AMOEBA_UREY_BRADLEY_FORCE_H_*/
plugins/amoeba/openmmapi/include/openmm/AmoebaVdwForce.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_VDW_FORCE_H_
#define OPENMM_AMOEBA_VDW_FORCE_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/AmoebaWcaDispersionForce.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_WCA_DISPERSION_FORCE_H_
#define OPENMM_AMOEBA_WCA_DISPERSION_FORCE_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/amoebaKernels.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define AMOEBA_OPENMM_KERNELS_H_
#define AMOEBA_OPENMM_KERNELS_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
@@ -32,7 +32,7 @@
...
@@ -32,7 +32,7 @@
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* USE OR OTHER DEALINGS IN THE SOFTWARE. *
* -------------------------------------------------------------------------- */
* -------------------------------------------------------------------------- */
#include "
Amoeba
OpenMM.h"
#include "OpenMM
Amoeba
.h"
#include "openmm/KernelImpl.h"
#include "openmm/KernelImpl.h"
#include "openmm/System.h"
#include "openmm/System.h"
#include "openmm/Platform.h"
#include "openmm/Platform.h"
...
...
plugins/amoeba/openmmapi/include/openmm/internal/AmoebaHarmonicAngleForceImpl.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_HARMONIC_ANGLE_FORCE_IMPL_H_
#define OPENMM_AMOEBA_HARMONIC_ANGLE_FORCE_IMPL_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/internal/AmoebaHarmonicBondForceImpl.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_HARMONIC_BOND_FORCE_IMPL_H_
#define OPENMM_AMOEBA_HARMONIC_BOND_FORCE_IMPL_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/internal/AmoebaHarmonicInPlaneAngleForceImpl.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_HARMONIC_IN_PLANE_ANGLE_FORCE_IMPL_H_
#define OPENMM_AMOEBA_HARMONIC_IN_PLANE_ANGLE_FORCE_IMPL_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/internal/AmoebaMultipoleForceImpl.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_MULTIPOLE_FORCE_IMPL_H_
#define OPENMM_AMOEBA_MULTIPOLE_FORCE_IMPL_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/internal/AmoebaOutOfPlaneBendForceImpl.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_OUT_OF_PLANE_BEND_FORCE_IMPL_H_
#define OPENMM_AMOEBA_OUT_OF_PLANE_BEND_FORCE_IMPL_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
plugins/amoeba/openmmapi/include/openmm/internal/AmoebaPiTorsionForceImpl.h
View file @
b90e80ff
...
@@ -2,7 +2,7 @@
...
@@ -2,7 +2,7 @@
#define OPENMM_AMOEBA_PI_TORSION_FORCE_IMPL_H_
#define OPENMM_AMOEBA_PI_TORSION_FORCE_IMPL_H_
/* -------------------------------------------------------------------------- *
/* -------------------------------------------------------------------------- *
*
Amoeba
OpenMM *
* OpenMM
Amoeba
*
* -------------------------------------------------------------------------- *
* -------------------------------------------------------------------------- *
* This is part of the OpenMM molecular simulation toolkit originating from *
* This is part of the OpenMM molecular simulation toolkit originating from *
* Simbios, the NIH National Center for Physics-Based Simulation of *
* Simbios, the NIH National Center for Physics-Based Simulation of *
...
...
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