GitLab

TorsionTorsion grids reordered, if needed, so that first angle is the 'slow' index
Fixes for MonteCarloBarostat 

Windows compiler did not like the following: std::max(std::max(gridSize.x, gridSize.y), gridSize.z);

Fixed problem w/ AmoebaVdwForce.areParticlesIdentical() that was preventing particles from being reordered

WCA force now written directly to cuda.force4 array

Reduced memory footprint

Set nonbondThreadsPerBlock to gpu->sim.nonbond_threads_per_block

-This line, and th -se below, will be ignored--

M    amoebaCudaGpu.cpp
M    kCalculateAmoebaCudaMapTorques.cu
M    kCalculateAmoebaCudaRotateFrame.cu

Modified cudaLoadCudaFloatArray() call
Minor optimizations

Added diagnostics for handling reorder of atoms

Bug in Urey-Bradley force calculation fixed

Added support for missing axis types (Cuda only)
Removed rotationMatrix

Renamed files to be consistent w/ other file names