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AmoebaOutOfPlaneBendForce.cpp 5.4 KB
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/* -------------------------------------------------------------------------- *
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 *                                OpenMMAmoeba                                *
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 * -------------------------------------------------------------------------- *
 * This is part of the OpenMM molecular simulation toolkit originating from   *
 * Simbios, the NIH National Center for Physics-Based Simulation of           *
 * Biological Structures at Stanford, funded under the NIH Roadmap for        *
 * Medical Research, grant U54 GM072970. See https://simtk.org.               *
 *                                                                            *
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 * Portions copyright (c) 2008-2016 Stanford University and the Authors.      *
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 * Authors:                                                                   *
 * Contributors:                                                              *
 *                                                                            *
 * Permission is hereby granted, free of charge, to any person obtaining a    *
 * copy of this software and associated documentation files (the "Software"), *
 * to deal in the Software without restriction, including without limitation  *
 * the rights to use, copy, modify, merge, publish, distribute, sublicense,   *
 * and/or sell copies of the Software, and to permit persons to whom the      *
 * Software is furnished to do so, subject to the following conditions:       *
 *                                                                            *
 * The above copyright notice and this permission notice shall be included in *
 * all copies or substantial portions of the Software.                        *
 *                                                                            *
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR *
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,   *
 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL    *
 * THE AUTHORS, CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,    *
 * DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR      *
 * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE  *
 * USE OR OTHER DEALINGS IN THE SOFTWARE.                                     *
 * -------------------------------------------------------------------------- */

#include "openmm/Force.h"
#include "openmm/OpenMMException.h"
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#include "openmm/AmoebaOutOfPlaneBendForce.h"
#include "openmm/internal/AmoebaOutOfPlaneBendForceImpl.h"
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using namespace OpenMM;

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AmoebaOutOfPlaneBendForce::AmoebaOutOfPlaneBendForce() : usePeriodic(false) {
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    _globalCubicK     = -0.1400000E-01;
    _globalQuarticK   =  0.5600000E-04;
    _globalPenticK    = -0.7000000E-06;
    _globalSexticK    =  0.2200000E-07;

}

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double AmoebaOutOfPlaneBendForce::getAmoebaGlobalOutOfPlaneBendCubic() const {
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    return _globalCubicK;
}

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void AmoebaOutOfPlaneBendForce::setAmoebaGlobalOutOfPlaneBendCubic(double cubicK) {
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    _globalCubicK           = cubicK;
}

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double AmoebaOutOfPlaneBendForce::getAmoebaGlobalOutOfPlaneBendQuartic() const {
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    return _globalQuarticK;
}

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void AmoebaOutOfPlaneBendForce::setAmoebaGlobalOutOfPlaneBendQuartic(double quarticK) {
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    _globalQuarticK         = quarticK;
}

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double AmoebaOutOfPlaneBendForce::getAmoebaGlobalOutOfPlaneBendPentic() const {
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    return _globalPenticK;
}

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void AmoebaOutOfPlaneBendForce::setAmoebaGlobalOutOfPlaneBendPentic(double penticK) {
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    _globalPenticK           = penticK;
}

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double AmoebaOutOfPlaneBendForce::getAmoebaGlobalOutOfPlaneBendSextic() const {
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    return _globalSexticK;
}

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void AmoebaOutOfPlaneBendForce::setAmoebaGlobalOutOfPlaneBendSextic(double sexticK) {
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    _globalSexticK         = sexticK;
}

int AmoebaOutOfPlaneBendForce::addOutOfPlaneBend(int particle1, int particle2, int particle3, int particle4, double k) {
    outOfPlaneBends.push_back(OutOfPlaneBendInfo(particle1, particle2, particle3, particle4, k));
    return outOfPlaneBends.size()-1;
}

void AmoebaOutOfPlaneBendForce::getOutOfPlaneBendParameters(int index, int& particle1, int& particle2, int& particle3, int& particle4,
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                                                            double& k) const {
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    particle1       = outOfPlaneBends[index].particle1;
    particle2       = outOfPlaneBends[index].particle2;
    particle3       = outOfPlaneBends[index].particle3;
    particle4       = outOfPlaneBends[index].particle4;
    k               = outOfPlaneBends[index].k;
}

void AmoebaOutOfPlaneBendForce::setOutOfPlaneBendParameters(int index, int particle1, int particle2, int particle3, int particle4,
                                                            double k) {
    outOfPlaneBends[index].particle1  = particle1;
    outOfPlaneBends[index].particle2  = particle2;
    outOfPlaneBends[index].particle3  = particle3;
    outOfPlaneBends[index].particle4  = particle4;
    outOfPlaneBends[index].k          = k;
}

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ForceImpl* AmoebaOutOfPlaneBendForce::createImpl() const {
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    return new AmoebaOutOfPlaneBendForceImpl(*this);
}
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void AmoebaOutOfPlaneBendForce::updateParametersInContext(Context& context) {
    dynamic_cast<AmoebaOutOfPlaneBendForceImpl&>(getImplInContext(context)).updateParametersInContext(getContextImpl(context));
}
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void AmoebaOutOfPlaneBendForce::setUsesPeriodicBoundaryConditions(bool periodic) {
    usePeriodic = periodic;
}

bool AmoebaOutOfPlaneBendForce::usesPeriodicBoundaryConditions() const {
    return usePeriodic;
}