GitLab

[ci][docs] fix link checking action by switching from linkchecker to lychee and update some links (#7027)

* [docs] update and simplify installation docs

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* remove more references to CMake and GLIBC versions

---------
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Update static_analysis.yml

* Update README.md

* Update README.md

* [R-package] [docs] fix calculation of R test coverage (fixes #4919)

* use quotes

* use in_covr() instead of env variable

* Update R-package/README.md
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* check that covr exists

* add covr to suggests

* use R_COVR environment variable

* Update R-package/tests/testthat/test_lgb.unloader.R
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [R-package] reduce verbosity in some unit tests

* simplify

* Update R-package/tests/testthat/test_lgb.plot.interpretation.R

* [R-package] [docs] add intro vignette (#3946)

* add 10 test vignettes

* Revert "add 10 test vignettes"

This reverts commit 40fb2e2f1982402798776ee44e4ec82fc4644d3d.

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Michael Mayer <mayermichael79@gmail.com>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [R-package] parallelize compilation in CMake-based builds

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* working on adding -j

* pass -j through to install.libs.R

* add docs on -j

* use -j4

* Update R-package/README.md
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* [R-package] allow use of custom R executable building CRAN package

* Update build-cran-package.sh
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* add jobs mimicking CRAN gcc-ASAN and clang-ASAN

* comment out CI

* fix redirection

* remove unnecessary echo

* Revert "comment out CI"

This reverts commit 899fbb4574b99a8125b28761425e3e821bfdfef1.

* remove redundant env variables and update README

* remove inaccurate comment

* change test title

* Revert "Fix ASAN issues with `std::function` usage (#4673)"

This reverts commit 13ed38ca

.

* Revert "Revert "Fix ASAN issues with `std::function` usage (#4673)""

This reverts commit 24c275ba84f1f182275f74ff4ad2e510bb18f4bd.

* revert unnecessary change in config order

* Apply suggestions from code review
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* Update README.rst

* Update README.md

* Update Installation-Guide.rst

* [R-package] use C++ compiler for pre-compile checks on Windows

* install Matrix in valgrind test

* Add {Matrix} in more places in CI and docs

* use CXX11

* use flags specific to C++11

* missing backtick
Co-authored-by: Nikita Titov <nekit94-12@hotmail.com>

* [ci] parallelize R package installs in CI jobs

* build 2

* build 3

* add ncpus in static_analysis

* use GitHub Actions to re-generate R configure

* Update R-package/README.md
Co-authored-by: James Lamb <jaylamb20@gmail.com>
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* build CRAN R-package on Azure with every commit and attach to releases

* test CI

* fix path

* revert CI test

* [ci] install additional LaTeX packages in R CI jobs

* update autoconf version

* bump upper limit on package size to 100

* run R CRAN checks on Solaris by optional workflow

* Update triggering_comments.yml

* Update r_solaris.yml

* Update optional_checks.yml

* Update triggering_comments.yml

* Update run_rhub_solaris_checks.R

* Update r_solaris.yml

* Update run_rhub_solaris_checks.R

* Update r_solaris.yml

* simplify code

* fix lint and address review comments

* [R-package] Add GPU install options (fixes #3765)

* whitespace

* linting

* Update build_r.R
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>
Co-authored-by: Nikita Titov <nekit94-08@mail.ru>

* improve experience with optional GitHub workflows

* Update README.md

* Update r_artifacts.yml

* Update optional_checks.yml

* continue

* Update triggering_comments.yml

* Update README.md

* Update r_artifacts.yml

* Update r_artifacts.yml

* Update r_artifacts.yml

* Update r_valgrind.yml

* Update r_artifacts.yml

* Update r_valgrind.yml

* Update r_valgrind.yml

* Update r_valgrind.yml

* add docstrings to fix lint

* better formatting for multi-line commands

* Fix LightGBM models locale sensitivity and improve R/W performance.

When Java is used, the default C++ locale is broken. This is true for
Java providers that use the C API or even Python models that require JEP.

This patch solves that issue making the model reads/writes insensitive
to such settings.
To achieve it, within the model read/write codebase:
 - C++ streams are imbued with the classic locale
 - Calls to functions that are dependent on the locale are replaced
 - The default locale is not changed!

This approach means:
 - The user's locale is never tampered with, avoiding issues such as
    https://github.com/microsoft/LightGBM/issues/2979 with the previous
    approach https://github.com/microsoft/LightGBM/pull/2891
 - Datasets can still be read according the user's locale
 - The model file has a single format independent of locale

Changes:
 - Add CommonC namespace which provides faster locale-independent versions of Common's methods
 - Model code makes conversions through CommonC
 - Cleanup unused Common methods
 - Performance improvements. Use fast libraries for locale-agnostic conversion:
   - value->string: https://github.com/fmtlib/fmt
   - string->double: https://github.com/lemire/fast_double_parser (10x
      faster double parsing according to their benchmark)

Bugfixes:
 - https://github.com/microsoft/LightGBM/issues/2500
 - https://github.com/microsoft/LightGBM/issues/2890
 - https://github.com/ninia/jep/issues/205

 (as it is related to LGBM as well)

* Align CommonC namespace

* Add new external_libs/ to python setup

* Try fast_double_parser fix #1

Testing commit e09e5aad828bcb16bea7ed0ed8322e019112fdbe

If it works it should fix more LGBM builds

* CMake: Attempt to link fmt without explicit PUBLIC tag

* Exclude external_libs from linting

* Add exernal_libs to MANIFEST.in

* Set dynamic linking option for fmt.

* linting issues

* Try to fix lint includes

* Try to pass fPIC with static fmt lib

* Try CMake P_I_C option with fmt library

* [R-package] Add CMake support for R and CRAN

* Cleanup CMakeLists

* Try fmt hack to remove stdout

* Switch to header-only mode

* Add PRIVATE argument to target_link_libraries

* use fmt in header-only mode

* Remove CMakeLists comment

* Change OpenMP to PUBLIC linking in Mac

* Update fmt submodule to 7.1.2

* Use fmt in header-only-mode

* Remove fmt from CMakeLists.txt

* Upgrade fast_double_parser to v0.2.0

* Revert "Add PRIVATE argument to target_link_libraries"

This reverts commit 3dd45dde7b92531b2530ab54522bb843c56227a7.

* Address James Lamb's comments

* Update R-package/.Rbuildignore
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* Upgrade to fast_double_parser v0.3.0 - Solaris support

* Use legacy code only in Solaris

* Fix lint issues

* Fix comment

* Address StrikerRUS's comments (solaris ifdef).

* Change header guards
Co-authored-by: James Lamb <jaylamb20@gmail.com>

* [R-package] {lightgbm} is now available on CRAN (fixes #629)

* more cleanup

* remove precompiled binaries section