[ci] Use Ubuntu 22.04 as `ubuntu-latest` at CI (fixes #5186) (#5288)

.ci/setup.sh

@@ -42,13 +42,13 @@ else  # Linux
             iputils-ping \
             jq \
             libcurl4 \
-            libicu66 \
-            libssl1.1 \
+            libicu-dev \
+            libssl-dev \
             libunwind8 \
             locales \
             netcat \
             unzip \
-            zip
+            zip || exit -1
         if [[ $COMPILER == "clang" ]]; then
             sudo apt-get install --no-install-recommends -y \
                 clang \
@@ -60,6 +60,10 @@ else  # Linux
         sudo locale-gen ${LANG}
         sudo update-locale
     fi
+    if [[ $TASK == "r-package" ]] && [[ $COMPILER == "clang" ]]; then
+        sudo apt-get install --no-install-recommends -y \
+            libomp-dev
+    fi
     if [[ $TASK == "mpi" ]]; then
         if [[ $IN_UBUNTU_LATEST_CONTAINER == "true" ]]; then
             sudo apt-get update
@@ -75,10 +79,10 @@ else  # Linux
     fi
     if [[ $TASK == "gpu" ]]; then
         if [[ $IN_UBUNTU_LATEST_CONTAINER == "true" ]]; then
-            sudo add-apt-repository ppa:mhier/libboost-latest -y
             sudo apt-get update
             sudo apt-get install --no-install-recommends -y \
                 libboost1.74-dev \
+                libboost-filesystem1.74-dev \
                 ocl-icd-opencl-dev
         else  # in manylinux image
             sudo yum update -y

.github/workflows/linkchecker.yml

@@ -17,7 +17,7 @@ env:
 jobs:
   check-links:
     timeout-minutes: 60
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - name: Checkout repository
         uses: actions/checkout@v3

.github/workflows/no-response.yml

@@ -9,7 +9,7 @@ on:
 
 jobs:
   noResponse:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - uses: lee-dohm/no-response@v0.5.0
         with:

.github/workflows/optional_checks.yml

@@ -9,7 +9,7 @@ on:
 jobs:
   all-successful:
     timeout-minutes: 120
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     steps:
       - name: Checkout repository
         uses: actions/checkout@v3

.github/workflows/r_configure.yml

@@ -9,7 +9,7 @@ jobs:
     name: r-configure
     timeout-minutes: 60
     runs-on: ubuntu-latest
-    container: "ubuntu:20.04"
+    container: "ubuntu:22.04"
     steps:
       - name: Install essential software before checkout
         run: |

.github/workflows/r_package.yml

@@ -33,22 +33,22 @@ jobs:
           ################
           # CMake builds #
           ################
-          - os: ubuntu-latest
+          - os: ubuntu-22.04
             task: r-package
             compiler: gcc
             r_version: 3.6
             build_type: cmake
-          - os: ubuntu-latest
+          - os: ubuntu-22.04
             task: r-package
             compiler: gcc
             r_version: 4.2
             build_type: cmake
-          - os: ubuntu-latest
+          - os: ubuntu-22.04
             task: r-package
             compiler: clang
             r_version: 3.6
             build_type: cmake
-          - os: ubuntu-latest
+          - os: ubuntu-22.04
             task: r-package
             compiler: clang
             r_version: 4.2
@@ -114,7 +114,7 @@ jobs:
             toolchain: MSYS
             r_version: 4.2
             build_type: cran
-          - os: ubuntu-latest
+          - os: ubuntu-22.04
             task: r-package
             compiler: gcc
             r_version: 4.2
@@ -127,7 +127,7 @@ jobs:
           ################
           # Other checks #
           ################
-          - os: ubuntu-latest
+          - os: ubuntu-22.04
             task: r-rchk
             compiler: gcc
             r_version: 4.2
@@ -151,7 +151,7 @@ jobs:
           CTAN_MIRROR: https://ctan.math.illinois.edu/systems/win32/miktex
           TINYTEX_INSTALLER: TinyTeX
       - name: Setup and run tests on Linux and macOS
-        if: matrix.os == 'macOS-latest' || matrix.os == 'ubuntu-latest'
+        if: matrix.os == 'macOS-latest' || matrix.os == 'ubuntu-22.04'
         shell: bash
         run: |
           export TASK="${{ matrix.task }}"
@@ -159,7 +159,7 @@ jobs:
           export GITHUB_ACTIONS="true"
           if [[ "${{ matrix.os }}" == "macOS-latest" ]]; then
               export OS_NAME="macos"
-          elif [[ "${{ matrix.os }}" == "ubuntu-latest" ]]; then
+          elif [[ "${{ matrix.os }}" == "ubuntu-22.04" ]]; then
               export OS_NAME="linux"
           fi
           export BUILD_DIRECTORY="$GITHUB_WORKSPACE"
@@ -181,9 +181,9 @@ jobs:
           $env:TASK = "${{ matrix.task }}"
           & "$env:GITHUB_WORKSPACE/.ci/test_windows.ps1"
   test-r-sanitizers:
-    name: r-sanitizers (ubuntu-latest, R-devel, ${{ matrix.compiler }} ASAN/UBSAN)
+    name: r-sanitizers (ubuntu-22.04, R-devel, ${{ matrix.compiler }} ASAN/UBSAN)
     timeout-minutes: 60
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     container: wch1/r-debug
     strategy:
       fail-fast: false
@@ -219,7 +219,7 @@ jobs:
   test-r-debian-clang:
     name: r-package (debian, R-devel, clang)
     timeout-minutes: 60
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     container: rhub/debian-clang-devel
     steps:
       - name: Install Git before checkout
@@ -248,7 +248,7 @@ jobs:
           fi
   all-successful:
     # https://github.community/t/is-it-possible-to-require-all-github-actions-tasks-to-pass-without-enumerating-them/117957/4?u=graingert
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     needs: [test, test-r-sanitizers, test-r-debian-clang]
     steps:
     - name: Note that all tests succeeded

.github/workflows/static_analysis.yml

@@ -21,7 +21,7 @@ env:
 jobs:
   test:
     name: ${{ matrix.task }}
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     timeout-minutes: 60
     strategy:
       fail-fast: false
@@ -47,7 +47,7 @@ jobs:
   r-check-docs:
     name: r-package-check-docs
     timeout-minutes: 60
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     container: rocker/verse
     steps:
       - name: Trust git cloning LightGBM
@@ -82,7 +82,7 @@ jobs:
           fi
   all-successful:
     # https://github.community/t/is-it-possible-to-require-all-github-actions-tasks-to-pass-without-enumerating-them/117957/4?u=graingert
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-22.04
     needs: [test, r-check-docs]
     steps:
     - name: Note that all tests succeeded

.vsts-ci.yml

@@ -21,7 +21,7 @@ resources:
   - container: linux-artifact-builder
     image: lightgbm/vsts-agent:manylinux_2_28_x86_64
   - container: ubuntu-latest
-    image: 'ubuntu:20.04'
+    image: 'ubuntu:22.04'
     options: "--name ci-container -v /usr/bin/docker:/tmp/docker:ro"
   - container: rbase
     image: wch1/r-debug
@@ -151,7 +151,7 @@ jobs:
     OS_NAME: 'linux'
     PRODUCES_ARTIFACTS: 'true'
   pool:
-    vmImage: ubuntu-latest
+    vmImage: ubuntu-22.04
   timeoutInMinutes: 180
   strategy:
     matrix:
@@ -299,7 +299,7 @@ jobs:
 ###########################################
   condition: not(startsWith(variables['Build.SourceBranch'], 'refs/pull/'))
   pool:
-    vmImage: 'ubuntu-latest'
+    vmImage: 'ubuntu-22.04'
   container: rbase
   steps:
   - script: |
@@ -330,7 +330,7 @@ jobs:
   - R_artifact
   condition: and(succeeded(), not(startsWith(variables['Build.SourceBranch'], 'refs/pull/')))
   pool:
-    vmImage: 'ubuntu-latest'
+    vmImage: 'ubuntu-22.04'
   steps:
   # Create archives with complete source code included (with git submodules)
   - task: ArchiveFiles@2

R-package/AUTOCONF_UBUNTU_VERSION

-2.69-11.1
+2.71-2

R-package/README.md

@@ -352,22 +352,22 @@ This section briefly explains the key files for building a CRAN package. To upda
 At build time, `configure` will be run and used to create a file `Makevars`, using `Makevars.in` as a template.
 
 1. Edit `configure.ac`.
-2. Create `configure` with `autoconf`. Do not edit it by hand. This file must be generated on Ubuntu 20.04.
+2. Create `configure` with `autoconf`. Do not edit it by hand. This file must be generated on Ubuntu 22.04.
 
-    If you have an Ubuntu 20.04 environment available, run the provided script from the root of the `LightGBM` repository.
+    If you have an Ubuntu 22.04 environment available, run the provided script from the root of the `LightGBM` repository.
 
     ```shell
     ./R-package/recreate-configure.sh
     ```
 
-    If you do not have easy access to an Ubuntu 20.04 environment, the `configure` script can be generated using Docker by running the code below from the root of this repo.
+    If you do not have easy access to an Ubuntu 22.04 environment, the `configure` script can be generated using Docker by running the code below from the root of this repo.
 
     ```shell
     docker run \
         --rm \
         -v $(pwd):/opt/LightGBM \
         -w /opt/LightGBM \
-        -t ubuntu:20.04 \
+        -t ubuntu:22.04 \
         ./R-package/recreate-configure.sh
     ```
 

R-package/recreate-configure.sh

 #!/bin/bash
 
 # recreates 'configure' from 'configure.ac'
-# this script should run on Ubuntu 20.04
+# this script should run on Ubuntu 22.04
 AUTOCONF_VERSION=$(cat R-package/AUTOCONF_UBUNTU_VERSION)
 
 # R packages cannot have versions like 3.0.0rc1, but