[c++][ci] fix `include_what_you_use` errors from cpplint (#7052)

* dev

* dev

* dev

* Update static_analysis.yml

* Update .pre-commit-config.yaml

---------
Co-authored-by: James Lamb <jaylamb20@gmail.com>

.ci/parameter-generator.py

@@ -289,7 +289,13 @@ def gen_parameter_code(
  * This file is auto generated by LightGBM\.ci\parameter-generator.py from LightGBM\include\LightGBM\config.h file.
  */
 """
-    str_to_write += "#include<LightGBM/config.h>\nnamespace LightGBM {\n"
+    str_to_write += "#include <LightGBM/config.h>\n\n"
+    str_to_write += "#include <string>\n"
+    str_to_write += "#include <unordered_map>\n"
+    str_to_write += "#include <unordered_set>\n"
+    str_to_write += "#include <vector>\n\n"
+    str_to_write += "namespace LightGBM {\n"
+
     # alias table
     str_to_write += "const std::unordered_map<std::string, std::string>& Config::alias_table() {\n"
     str_to_write += "  static std::unordered_map<std::string, std::string> aliases({\n"

.pre-commit-config.yaml

@@ -28,7 +28,7 @@ repos:
       - id: cpplint
         args:
           - --recursive
-          - --filter=-build/include_subdir,-build/include_what_you_use,-build/header_guard,-whitespace/indent_namespace,-whitespace/line_length
+          - --filter=-build/include_subdir,-build/header_guard,-whitespace/indent_namespace,-whitespace/line_length
   - repo: local
     hooks:
       - id: check-omp-pragmas

src/application/application.cpp

@@ -16,13 +16,16 @@
 #include <LightGBM/utils/openmp_wrapper.h>
 #include <LightGBM/utils/text_reader.h>
 
-#include <string>
 #include <chrono>
 #include <cstdio>
 #include <ctime>
 #include <fstream>
+#include <memory>
 #include <sstream>
+#include <string>
+#include <unordered_map>
 #include <utility>
+#include <vector>
 
 #include "predictor.hpp"
 

src/boosting/boosting.cpp

@@ -4,6 +4,9 @@
  */
 #include <LightGBM/boosting.h>
 
+#include <memory>
+#include <string>
+
 #include "dart.hpp"
 #include "gbdt.h"
 #include "rf.hpp"

src/boosting/gbdt.cpp

@@ -12,10 +12,16 @@
 #include <LightGBM/utils/openmp_wrapper.h>
 #include <LightGBM/sample_strategy.h>
 
+#include <algorithm>
 #include <chrono>
 #include <ctime>
+#include <memory>
 #include <queue>
 #include <sstream>
+#include <string>
+#include <unordered_map>
+#include <utility>
+#include <vector>
 
 namespace LightGBM {
 

src/boosting/gbdt_model_text.cpp

@@ -8,8 +8,11 @@
 #include <LightGBM/utils/array_args.h>
 #include <LightGBM/utils/common.h>
 
+#include <algorithm>
 #include <string>
 #include <sstream>
+#include <unordered_map>
+#include <utility>
 #include <vector>
 
 #include "gbdt.h"

src/boosting/gbdt_prediction.cpp

@@ -6,6 +6,8 @@
 #include <LightGBM/prediction_early_stop.h>
 #include <LightGBM/utils/openmp_wrapper.h>
 
+#include <unordered_map>
+
 #include "gbdt.h"
 
 namespace LightGBM {

src/boosting/prediction_early_stop.cpp

@@ -6,9 +6,11 @@
 
 #include <LightGBM/utils/log.h>
 
-#include <limits>
 #include <algorithm>
 #include <cmath>
+#include <functional>
+#include <limits>
+#include <string>
 #include <vector>
 
 namespace LightGBM {

src/boosting/sample_strategy.cpp

@@ -4,6 +4,9 @@
  */
 
 #include <LightGBM/sample_strategy.h>
+
+#include <string>
+
 #include "goss.hpp"
 #include "bagging.hpp"
 

src/c_api.cpp

@@ -20,13 +20,16 @@
 #include <LightGBM/utils/random.h>
 #include <LightGBM/utils/threading.h>
 
-#include <string>
-#include <cstdio>
+#include <algorithm>
 #include <cstdint>
+#include <cstdio>
 #include <functional>
 #include <memory>
 #include <mutex>
 #include <stdexcept>
+#include <string>
+#include <unordered_map>
+#include <utility>
 #include <vector>
 
 #include "application/predictor.hpp"

src/cuda/cuda_algorithms.cu

@@ -9,6 +9,8 @@
 #include <LightGBM/cuda/cuda_algorithms.hpp>
 #include <LightGBM/cuda/cuda_rocm_interop.h>
 
+#include <algorithm>
+
 namespace LightGBM {
 
 template <typename T>

src/io/bin.cpp

@@ -12,6 +12,8 @@
 #include <cmath>
 #include <cstdint>
 #include <cstring>
+#include <limits>
+#include <vector>
 
 #include "dense_bin.hpp"
 #include "multi_val_dense_bin.hpp"

src/io/config.cpp

@@ -9,7 +9,12 @@
 #include <LightGBM/utils/log.h>
 #include <LightGBM/utils/random.h>
 
+#include <algorithm>
 #include <limits>
+#include <string>
+#include <unordered_map>
+#include <unordered_set>
+#include <vector>
 
 namespace LightGBM {
 

src/io/config_auto.cpp

@@ -5,7 +5,13 @@
  * \note
  * This file is auto generated by LightGBM\.ci\parameter-generator.py from LightGBM\include\LightGBM\config.h file.
  */
-#include<LightGBM/config.h>
+#include <LightGBM/config.h>
+
+#include <string>
+#include <unordered_map>
+#include <unordered_set>
+#include <vector>
+
 namespace LightGBM {
 const std::unordered_map<std::string, std::string>& Config::alias_table() {
   static std::unordered_map<std::string, std::string> aliases({

src/io/cuda/cuda_column_data.cpp

@@ -8,6 +8,7 @@
 #include <LightGBM/cuda/cuda_column_data.hpp>
 
 #include <cstdint>
+#include <vector>
 
 namespace LightGBM {
 

src/io/cuda/cuda_metadata.cpp

@@ -7,6 +7,8 @@
 
 #include <LightGBM/cuda/cuda_metadata.hpp>
 
+#include <vector>
+
 namespace LightGBM {
 
 CUDAMetadata::CUDAMetadata(const int gpu_device_id) {

src/io/cuda/cuda_row_data.cpp

@@ -7,6 +7,8 @@
 
 #include <LightGBM/cuda/cuda_row_data.hpp>
 
+#include <vector>
+
 namespace LightGBM {
 
 CUDARowData::CUDARowData(const Dataset* train_data,

src/io/dataset.cpp

@@ -11,11 +11,17 @@
 #include <LightGBM/utils/openmp_wrapper.h>
 #include <LightGBM/utils/threading.h>
 
+#include <algorithm>
 #include <chrono>
 #include <cstdio>
 #include <limits>
+#include <memory>
 #include <sstream>
+#include <string>
 #include <unordered_map>
+#include <unordered_set>
+#include <utility>
+#include <vector>
 
 namespace LightGBM {
 

src/io/dataset_loader.cpp

@@ -10,8 +10,15 @@
 #include <LightGBM/utils/log.h>
 #include <LightGBM/utils/openmp_wrapper.h>
 
+#include <algorithm>
 #include <chrono>
 #include <fstream>
+#include <memory>
+#include <string>
+#include <unordered_map>
+#include <unordered_set>
+#include <utility>
+#include <vector>
 
 namespace LightGBM {
 

src/io/file_io.cpp

@@ -8,7 +8,10 @@
 #include <LightGBM/utils/log.h>
 
 #include <algorithm>
+#include <cstdio>
+#include <memory>
 #include <sstream>
+#include <string>
 #include <unordered_map>
 
 namespace LightGBM {