dataset.cpp 74.8 KB
Newer Older
1
2
/*!
 * Copyright (c) 2016 Microsoft Corporation. All rights reserved.
Guolin Ke's avatar
Guolin Ke committed
3
4
 * Licensed under the MIT License. See LICENSE file in the project root for
 * license information.
5
 */
6
7
8
#include <LightGBM/dataset.h>

#include <LightGBM/feature_group.h>
9
#include <LightGBM/cuda/vector_cudahost.h>
10
11
12
13
#include <LightGBM/utils/array_args.h>
#include <LightGBM/utils/openmp_wrapper.h>
#include <LightGBM/utils/threading.h>

14
15
16
17
18
19
#include <chrono>
#include <cstdio>
#include <limits>
#include <sstream>
#include <unordered_map>

Guolin Ke's avatar
Guolin Ke committed
20
21
namespace LightGBM {

22
23
24
const int Dataset::kSerializedReferenceVersionLength = 2;
const char* Dataset::serialized_reference_version = "v1";

Guolin Ke's avatar
Guolin Ke committed
25
26
const char* Dataset::binary_file_token =
    "______LightGBM_Binary_File_Token______\n";
27
28
const char* Dataset::binary_serialized_reference_token =
    "______LightGBM_Binary_Serialized_Token______\n";
Guolin Ke's avatar
Guolin Ke committed
29

Guolin Ke's avatar
Guolin Ke committed
30
Dataset::Dataset() {
31
  data_filename_ = "noname";
Guolin Ke's avatar
Guolin Ke committed
32
  num_data_ = 0;
Guolin Ke's avatar
Guolin Ke committed
33
  is_finish_load_ = false;
34
  wait_for_manual_finish_ = false;
35
  has_raw_ = false;
Guolin Ke's avatar
Guolin Ke committed
36
37
}

38
Dataset::Dataset(data_size_t num_data) {
39
  CHECK_GT(num_data, 0);
Guolin Ke's avatar
Guolin Ke committed
40
  data_filename_ = "noname";
Guolin Ke's avatar
Guolin Ke committed
41
  num_data_ = num_data;
Guolin Ke's avatar
Guolin Ke committed
42
  metadata_.Init(num_data_, NO_SPECIFIC, NO_SPECIFIC);
Guolin Ke's avatar
Guolin Ke committed
43
  is_finish_load_ = false;
44
  wait_for_manual_finish_ = false;
Guolin Ke's avatar
Guolin Ke committed
45
  group_bin_boundaries_.push_back(0);
46
  has_raw_ = false;
Guolin Ke's avatar
Guolin Ke committed
47
48
}

Guolin Ke's avatar
Guolin Ke committed
49
Dataset::~Dataset() {}
Guolin Ke's avatar
Guolin Ke committed
50

51
std::vector<std::vector<int>> OneFeaturePerGroup(const std::vector<int>& used_features) {
Guolin Ke's avatar
Guolin Ke committed
52
53
54
55
56
57
58
59
  std::vector<std::vector<int>> features_in_group;
  features_in_group.resize(used_features.size());
  for (size_t i = 0; i < used_features.size(); ++i) {
    features_in_group[i].emplace_back(used_features[i]);
  }
  return features_in_group;
}

guanqun's avatar
guanqun committed
60
int GetConflictCount(const std::vector<bool>& mark, const int* indices,
Guolin Ke's avatar
Guolin Ke committed
61
                     int num_indices, data_size_t max_cnt) {
Guolin Ke's avatar
Guolin Ke committed
62
63
64
65
  int ret = 0;
  for (int i = 0; i < num_indices; ++i) {
    if (mark[indices[i]]) {
      ++ret;
66
67
68
    }
    if (ret > max_cnt) {
      return -1;
Guolin Ke's avatar
Guolin Ke committed
69
70
71
72
    }
  }
  return ret;
}
73

Guolin Ke's avatar
Guolin Ke committed
74
75
void MarkUsed(std::vector<bool>* mark, const int* indices,
              data_size_t num_indices) {
Guolin Ke's avatar
Guolin Ke committed
76
  auto& ref_mark = *mark;
Guolin Ke's avatar
Guolin Ke committed
77
  for (int i = 0; i < num_indices; ++i) {
Guolin Ke's avatar
Guolin Ke committed
78
    ref_mark[indices[i]] = true;
Guolin Ke's avatar
Guolin Ke committed
79
80
81
  }
}

Guolin Ke's avatar
Guolin Ke committed
82
83
84
85
std::vector<int> FixSampleIndices(const BinMapper* bin_mapper,
                                  int num_total_samples, int num_indices,
                                  const int* sample_indices,
                                  const double* sample_values) {
Guolin Ke's avatar
Guolin Ke committed
86
87
88
89
90
91
92
93
94
  std::vector<int> ret;
  if (bin_mapper->GetDefaultBin() == bin_mapper->GetMostFreqBin()) {
    return ret;
  }
  int i = 0, j = 0;
  while (i < num_total_samples) {
    if (j < num_indices && sample_indices[j] < i) {
      ++j;
    } else if (j < num_indices && sample_indices[j] == i) {
Guolin Ke's avatar
Guolin Ke committed
95
96
      if (bin_mapper->ValueToBin(sample_values[j]) !=
          bin_mapper->GetMostFreqBin()) {
Guolin Ke's avatar
Guolin Ke committed
97
98
99
100
101
102
103
104
105
106
        ret.push_back(i);
      }
      ++i;
    } else {
      ret.push_back(i++);
    }
  }
  return ret;
}

Guolin Ke's avatar
Guolin Ke committed
107
108
109
110
111
112
std::vector<std::vector<int>> FindGroups(
    const std::vector<std::unique_ptr<BinMapper>>& bin_mappers,
    const std::vector<int>& find_order, int** sample_indices,
    const int* num_per_col, int num_sample_col, data_size_t total_sample_cnt,
    data_size_t num_data, bool is_use_gpu, bool is_sparse,
    std::vector<int8_t>* multi_val_group) {
Guolin Ke's avatar
Guolin Ke committed
113
  const int max_search_group = 100;
114
  const int max_bin_per_group = 256;
Guolin Ke's avatar
Guolin Ke committed
115
116
  const data_size_t single_val_max_conflict_cnt =
      static_cast<data_size_t>(total_sample_cnt / 10000);
117
118
  multi_val_group->clear();

Guolin Ke's avatar
Guolin Ke committed
119
120
121
  Random rand(num_data);
  std::vector<std::vector<int>> features_in_group;
  std::vector<std::vector<bool>> conflict_marks;
122
123
  std::vector<data_size_t> group_used_row_cnt;
  std::vector<data_size_t> group_total_data_cnt;
Guolin Ke's avatar
Guolin Ke committed
124
125
  std::vector<int> group_num_bin;

126
  // first round: fill the single val group
Guolin Ke's avatar
Guolin Ke committed
127
  for (auto fidx : find_order) {
128
    bool is_filtered_feature = fidx >= num_sample_col;
Guolin Ke's avatar
Guolin Ke committed
129
130
    const data_size_t cur_non_zero_cnt =
        is_filtered_feature ? 0 : num_per_col[fidx];
Guolin Ke's avatar
Guolin Ke committed
131
132
    std::vector<int> available_groups;
    for (int gid = 0; gid < static_cast<int>(features_in_group.size()); ++gid) {
Guolin Ke's avatar
Guolin Ke committed
133
134
135
136
      auto cur_num_bin = group_num_bin[gid] + bin_mappers[fidx]->num_bin() +
                         (bin_mappers[fidx]->GetDefaultBin() == 0 ? -1 : 0);
      if (group_total_data_cnt[gid] + cur_non_zero_cnt <=
          total_sample_cnt + single_val_max_conflict_cnt) {
137
        if (!is_use_gpu || cur_num_bin <= max_bin_per_group) {
Guolin Ke's avatar
Guolin Ke committed
138
139
          available_groups.push_back(gid);
        }
Guolin Ke's avatar
Guolin Ke committed
140
141
142
143
144
145
      }
    }
    std::vector<int> search_groups;
    if (!available_groups.empty()) {
      int last = static_cast<int>(available_groups.size()) - 1;
      auto indices = rand.Sample(last, std::min(last, max_search_group - 1));
146
      // always push the last group
Guolin Ke's avatar
Guolin Ke committed
147
148
149
150
151
      search_groups.push_back(available_groups.back());
      for (auto idx : indices) {
        search_groups.push_back(available_groups[idx]);
      }
    }
152
153
    int best_gid = -1;
    int best_conflict_cnt = -1;
Guolin Ke's avatar
Guolin Ke committed
154
    for (auto gid : search_groups) {
Guolin Ke's avatar
Guolin Ke committed
155
156
157
158
159
160
      const data_size_t rest_max_cnt = single_val_max_conflict_cnt -
                                       group_total_data_cnt[gid] +
                                       group_used_row_cnt[gid];
      const data_size_t cnt =
          is_filtered_feature
              ? 0
guanqun's avatar
guanqun committed
161
              : GetConflictCount(conflict_marks[gid], sample_indices[fidx],
Guolin Ke's avatar
Guolin Ke committed
162
                                 num_per_col[fidx], rest_max_cnt);
163
164
165
      if (cnt >= 0 && cnt <= rest_max_cnt && cnt <= cur_non_zero_cnt / 2) {
        best_gid = gid;
        best_conflict_cnt = cnt;
Guolin Ke's avatar
Guolin Ke committed
166
167
168
        break;
      }
    }
169
170
171
172
173
    if (best_gid >= 0) {
      features_in_group[best_gid].push_back(fidx);
      group_total_data_cnt[best_gid] += cur_non_zero_cnt;
      group_used_row_cnt[best_gid] += cur_non_zero_cnt - best_conflict_cnt;
      if (!is_filtered_feature) {
Guolin Ke's avatar
Guolin Ke committed
174
175
        MarkUsed(&conflict_marks[best_gid], sample_indices[fidx],
                 num_per_col[fidx]);
176
      }
Guolin Ke's avatar
Guolin Ke committed
177
178
179
      group_num_bin[best_gid] +=
          bin_mappers[fidx]->num_bin() +
          (bin_mappers[fidx]->GetDefaultBin() == 0 ? -1 : 0);
180
    } else {
Guolin Ke's avatar
Guolin Ke committed
181
182
183
      features_in_group.emplace_back();
      features_in_group.back().push_back(fidx);
      conflict_marks.emplace_back(total_sample_cnt, false);
184
      if (!is_filtered_feature) {
Guolin Ke's avatar
Guolin Ke committed
185
186
        MarkUsed(&(conflict_marks.back()), sample_indices[fidx],
                 num_per_col[fidx]);
187
      }
188
189
      group_total_data_cnt.emplace_back(cur_non_zero_cnt);
      group_used_row_cnt.emplace_back(cur_non_zero_cnt);
Guolin Ke's avatar
Guolin Ke committed
190
191
192
      group_num_bin.push_back(
          1 + bin_mappers[fidx]->num_bin() +
          (bin_mappers[fidx]->GetDefaultBin() == 0 ? -1 : 0));
193
194
    }
  }
Guolin Ke's avatar
Guolin Ke committed
195
196
197
198
  if (!is_sparse) {
    multi_val_group->resize(features_in_group.size(), false);
    return features_in_group;
  }
199
200
201
202
203
204
  std::vector<int> second_round_features;
  std::vector<std::vector<int>> features_in_group2;
  std::vector<std::vector<bool>> conflict_marks2;

  const double dense_threshold = 0.4;
  for (int gid = 0; gid < static_cast<int>(features_in_group.size()); ++gid) {
Guolin Ke's avatar
Guolin Ke committed
205
206
    const double dense_rate =
        static_cast<double>(group_used_row_cnt[gid]) / total_sample_cnt;
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
    if (dense_rate >= dense_threshold) {
      features_in_group2.push_back(std::move(features_in_group[gid]));
      conflict_marks2.push_back(std::move(conflict_marks[gid]));
    } else {
      for (auto fidx : features_in_group[gid]) {
        second_round_features.push_back(fidx);
      }
    }
  }

  features_in_group = features_in_group2;
  conflict_marks = conflict_marks2;
  multi_val_group->resize(features_in_group.size(), false);
  if (!second_round_features.empty()) {
    features_in_group.emplace_back();
    conflict_marks.emplace_back(total_sample_cnt, false);
    bool is_multi_val = is_use_gpu ? true : false;
    int conflict_cnt = 0;
    for (auto fidx : second_round_features) {
      features_in_group.back().push_back(fidx);
      if (!is_multi_val) {
        const int rest_max_cnt = single_val_max_conflict_cnt - conflict_cnt;
Guolin Ke's avatar
Guolin Ke committed
229
        const auto cnt =
guanqun's avatar
guanqun committed
230
            GetConflictCount(conflict_marks.back(), sample_indices[fidx],
Guolin Ke's avatar
Guolin Ke committed
231
                             num_per_col[fidx], rest_max_cnt);
232
233
234
235
236
        conflict_cnt += cnt;
        if (cnt < 0 || conflict_cnt > single_val_max_conflict_cnt) {
          is_multi_val = true;
          continue;
        }
Guolin Ke's avatar
Guolin Ke committed
237
238
        MarkUsed(&(conflict_marks.back()), sample_indices[fidx],
                 num_per_col[fidx]);
Guolin Ke's avatar
Guolin Ke committed
239
      }
Guolin Ke's avatar
Guolin Ke committed
240
    }
241
    multi_val_group->push_back(is_multi_val);
Guolin Ke's avatar
Guolin Ke committed
242
243
244
245
  }
  return features_in_group;
}

Guolin Ke's avatar
Guolin Ke committed
246
247
248
249
250
251
std::vector<std::vector<int>> FastFeatureBundling(
    const std::vector<std::unique_ptr<BinMapper>>& bin_mappers,
    int** sample_indices, double** sample_values, const int* num_per_col,
    int num_sample_col, data_size_t total_sample_cnt,
    const std::vector<int>& used_features, data_size_t num_data,
    bool is_use_gpu, bool is_sparse, std::vector<int8_t>* multi_val_group) {
252
  Common::FunctionTimer fun_timer("Dataset::FastFeatureBundling", global_timer);
Guolin Ke's avatar
Guolin Ke committed
253
  std::vector<size_t> feature_non_zero_cnt;
254
  feature_non_zero_cnt.reserve(used_features.size());
Guolin Ke's avatar
Guolin Ke committed
255
256
  // put dense feature first
  for (auto fidx : used_features) {
257
258
259
260
261
    if (fidx < num_sample_col) {
      feature_non_zero_cnt.emplace_back(num_per_col[fidx]);
    } else {
      feature_non_zero_cnt.emplace_back(0);
    }
Guolin Ke's avatar
Guolin Ke committed
262
263
264
  }
  // sort by non zero cnt
  std::vector<int> sorted_idx;
265
  sorted_idx.reserve(used_features.size());
266
  for (int i = 0; i < static_cast<int>(used_features.size()); ++i) {
Guolin Ke's avatar
Guolin Ke committed
267
268
269
    sorted_idx.emplace_back(i);
  }
  // sort by non zero cnt, bigger first
270
271
  std::stable_sort(sorted_idx.begin(), sorted_idx.end(),
                   [&feature_non_zero_cnt](int a, int b) {
Guolin Ke's avatar
Guolin Ke committed
272
273
                     return feature_non_zero_cnt[a] > feature_non_zero_cnt[b];
                   });
Guolin Ke's avatar
Guolin Ke committed
274
275

  std::vector<int> feature_order_by_cnt;
276
  feature_order_by_cnt.reserve(sorted_idx.size());
Guolin Ke's avatar
Guolin Ke committed
277
278
279
  for (auto sidx : sorted_idx) {
    feature_order_by_cnt.push_back(used_features[sidx]);
  }
280

Guolin Ke's avatar
Guolin Ke committed
281
282
283
284
285
286
  std::vector<std::vector<int>> tmp_indices;
  std::vector<int> tmp_num_per_col(num_sample_col, 0);
  for (auto fidx : used_features) {
    if (fidx >= num_sample_col) {
      continue;
    }
Guolin Ke's avatar
Guolin Ke committed
287
288
289
    auto ret = FixSampleIndices(
        bin_mappers[fidx].get(), static_cast<int>(total_sample_cnt),
        num_per_col[fidx], sample_indices[fidx], sample_values[fidx]);
Guolin Ke's avatar
Guolin Ke committed
290
291
292
293
294
295
296
297
    if (!ret.empty()) {
      tmp_indices.push_back(ret);
      tmp_num_per_col[fidx] = static_cast<int>(ret.size());
      sample_indices[fidx] = tmp_indices.back().data();
    } else {
      tmp_num_per_col[fidx] = num_per_col[fidx];
    }
  }
298
  std::vector<int8_t> group_is_multi_val, group_is_multi_val2;
Guolin Ke's avatar
Guolin Ke committed
299
300
301
302
303
304
305
306
  auto features_in_group =
      FindGroups(bin_mappers, used_features, sample_indices,
                 tmp_num_per_col.data(), num_sample_col, total_sample_cnt,
                 num_data, is_use_gpu, is_sparse, &group_is_multi_val);
  auto group2 =
      FindGroups(bin_mappers, feature_order_by_cnt, sample_indices,
                 tmp_num_per_col.data(), num_sample_col, total_sample_cnt,
                 num_data, is_use_gpu, is_sparse, &group_is_multi_val2);
307

Guolin Ke's avatar
Guolin Ke committed
308
309
  if (features_in_group.size() > group2.size()) {
    features_in_group = group2;
310
    group_is_multi_val = group_is_multi_val2;
Guolin Ke's avatar
Guolin Ke committed
311
312
  }
  // shuffle groups
313
314
  int num_group = static_cast<int>(features_in_group.size());
  Random tmp_rand(num_data);
Guolin Ke's avatar
Guolin Ke committed
315
316
  for (int i = 0; i < num_group - 1; ++i) {
    int j = tmp_rand.NextShort(i + 1, num_group);
317
    std::swap(features_in_group[i], features_in_group[j]);
318
    // Using std::swap for vector<bool> will cause the wrong result.
319
    std::swap(group_is_multi_val[i], group_is_multi_val[j]);
Guolin Ke's avatar
Guolin Ke committed
320
  }
321
322
  *multi_val_group = group_is_multi_val;
  return features_in_group;
Guolin Ke's avatar
Guolin Ke committed
323
324
}

Guolin Ke's avatar
Guolin Ke committed
325
326
327
void Dataset::Construct(std::vector<std::unique_ptr<BinMapper>>* bin_mappers,
                        int num_total_features,
                        const std::vector<std::vector<double>>& forced_bins,
328
329
330
331
332
333
                        int** sample_non_zero_indices,
                        double** sample_values,
                        const int* num_per_col,
                        int num_sample_col,
                        size_t total_sample_cnt,
                        const Config& io_config) {
334
  num_total_features_ = num_total_features;
Nikita Titov's avatar
Nikita Titov committed
335
  CHECK_EQ(num_total_features_, static_cast<int>(bin_mappers->size()));
Guolin Ke's avatar
Guolin Ke committed
336
337
  // get num_features
  std::vector<int> used_features;
Guolin Ke's avatar
Guolin Ke committed
338
  auto& ref_bin_mappers = *bin_mappers;
Guolin Ke's avatar
Guolin Ke committed
339
  for (int i = 0; i < static_cast<int>(bin_mappers->size()); ++i) {
Guolin Ke's avatar
Guolin Ke committed
340
    if (ref_bin_mappers[i] != nullptr && !ref_bin_mappers[i]->is_trivial()) {
Guolin Ke's avatar
Guolin Ke committed
341
      used_features.emplace_back(i);
Guolin Ke's avatar
Guolin Ke committed
342
    }
Guolin Ke's avatar
Guolin Ke committed
343
  }
Guolin Ke's avatar
Guolin Ke committed
344
  if (used_features.empty()) {
Guolin Ke's avatar
Guolin Ke committed
345
    Log::Warning(
346
347
348
        "There are no meaningful features which satisfy the provided configuration. "
        "Decreasing Dataset parameters min_data_in_bin or min_data_in_leaf and re-constructing "
        "Dataset might resolve this warning.");
Guolin Ke's avatar
Guolin Ke committed
349
  }
350
  auto features_in_group = OneFeaturePerGroup(used_features);
351
352

  auto is_sparse = io_config.is_enable_sparse;
353
  if (io_config.device_type == std::string("cuda")) {
354
      LGBM_config_::current_device = lgbm_device_cuda;
355
      if ((io_config.device_type == std::string("cuda")) && is_sparse) {
356
        Log::Warning("Using sparse features with CUDA is currently not supported.");
357
        is_sparse = false;
358
359
360
      }
  }

361
  std::vector<int8_t> group_is_multi_val(used_features.size(), 0);
362
  if (io_config.enable_bundle && !used_features.empty()) {
363
    bool lgbm_is_gpu_used = io_config.device_type == std::string("gpu") || io_config.device_type == std::string("cuda");
Guolin Ke's avatar
Guolin Ke committed
364
365
366
    features_in_group = FastFeatureBundling(
        *bin_mappers, sample_non_zero_indices, sample_values, num_per_col,
        num_sample_col, static_cast<data_size_t>(total_sample_cnt),
367
368
        used_features, num_data_, lgbm_is_gpu_used,
        is_sparse, &group_is_multi_val);
Guolin Ke's avatar
Guolin Ke committed
369
370
  }

Guolin Ke's avatar
Guolin Ke committed
371
372
373
374
375
376
377
378
379
380
  num_features_ = 0;
  for (const auto& fs : features_in_group) {
    num_features_ += static_cast<int>(fs.size());
  }
  int cur_fidx = 0;
  used_feature_map_ = std::vector<int>(num_total_features_, -1);
  num_groups_ = static_cast<int>(features_in_group.size());
  real_feature_idx_.resize(num_features_);
  feature2group_.resize(num_features_);
  feature2subfeature_.resize(num_features_);
Guolin Ke's avatar
Guolin Ke committed
381
  feature_need_push_zeros_.clear();
Guolin Ke's avatar
Guolin Ke committed
382
383
384
385
386
  group_bin_boundaries_.clear();
  uint64_t num_total_bin = 0;
  group_bin_boundaries_.push_back(num_total_bin);
  group_feature_start_.resize(num_groups_);
  group_feature_cnt_.resize(num_groups_);
Guolin Ke's avatar
Guolin Ke committed
387
388
389
  for (int i = 0; i < num_groups_; ++i) {
    auto cur_features = features_in_group[i];
    int cur_cnt_features = static_cast<int>(cur_features.size());
Guolin Ke's avatar
Guolin Ke committed
390
391
    group_feature_start_[i] = cur_fidx;
    group_feature_cnt_[i] = cur_cnt_features;
Guolin Ke's avatar
Guolin Ke committed
392
393
394
395
396
397
398
399
    // get bin_mappers
    std::vector<std::unique_ptr<BinMapper>> cur_bin_mappers;
    for (int j = 0; j < cur_cnt_features; ++j) {
      int real_fidx = cur_features[j];
      used_feature_map_[real_fidx] = cur_fidx;
      real_feature_idx_[cur_fidx] = real_fidx;
      feature2group_[cur_fidx] = i;
      feature2subfeature_[cur_fidx] = j;
Guolin Ke's avatar
Guolin Ke committed
400
      cur_bin_mappers.emplace_back(ref_bin_mappers[real_fidx].release());
Guolin Ke's avatar
Guolin Ke committed
401
402
      if (cur_bin_mappers.back()->GetDefaultBin() !=
          cur_bin_mappers.back()->GetMostFreqBin()) {
Guolin Ke's avatar
Guolin Ke committed
403
404
        feature_need_push_zeros_.push_back(cur_fidx);
      }
Guolin Ke's avatar
Guolin Ke committed
405
406
      ++cur_fidx;
    }
Guolin Ke's avatar
Guolin Ke committed
407
    feature_groups_.emplace_back(std::unique_ptr<FeatureGroup>(
408
      new FeatureGroup(cur_cnt_features, group_is_multi_val[i], &cur_bin_mappers, num_data_, i)));
Guolin Ke's avatar
Guolin Ke committed
409
410
411
    num_total_bin += feature_groups_[i]->num_total_bin_;
    group_bin_boundaries_.push_back(num_total_bin);
  }
Belinda Trotta's avatar
Belinda Trotta committed
412
  if (!io_config.max_bin_by_feature.empty()) {
413
414
415
416
    CHECK_EQ(static_cast<size_t>(num_total_features_),
             io_config.max_bin_by_feature.size());
    CHECK_GT(*(std::min_element(io_config.max_bin_by_feature.begin(),
                                io_config.max_bin_by_feature.end())), 1);
Belinda Trotta's avatar
Belinda Trotta committed
417
    max_bin_by_feature_.resize(num_total_features_);
Guolin Ke's avatar
Guolin Ke committed
418
419
    max_bin_by_feature_.assign(io_config.max_bin_by_feature.begin(),
                               io_config.max_bin_by_feature.end());
Belinda Trotta's avatar
Belinda Trotta committed
420
  }
421
  forced_bin_bounds_ = forced_bins;
422
423
424
425
426
  max_bin_ = io_config.max_bin;
  min_data_in_bin_ = io_config.min_data_in_bin;
  bin_construct_sample_cnt_ = io_config.bin_construct_sample_cnt;
  use_missing_ = io_config.use_missing;
  zero_as_missing_ = io_config.zero_as_missing;
427
428
429
430
431
432
433
434
435
436
437
438
  has_raw_ = false;
  if (io_config.linear_tree) {
    has_raw_ = true;
  }
  numeric_feature_map_ = std::vector<int>(num_features_, -1);
  num_numeric_features_ = 0;
  for (int i = 0; i < num_features_; ++i) {
    if (FeatureBinMapper(i)->bin_type() == BinType::NumericalBin) {
      numeric_feature_map_[i] = num_numeric_features_;
      ++num_numeric_features_;
    }
  }
439
440
  device_type_ = io_config.device_type;
  gpu_device_id_ = io_config.gpu_device_id;
441
442
}

Guolin Ke's avatar
Guolin Ke committed
443
void Dataset::FinishLoad() {
Guolin Ke's avatar
Guolin Ke committed
444
445
446
  if (is_finish_load_) {
    return;
  }
447
448
  if (num_groups_ > 0) {
    for (int i = 0; i < num_groups_; ++i) {
449
      feature_groups_[i]->FinishLoad();
450
    }
Guolin Ke's avatar
Guolin Ke committed
451
  }
452
453
  metadata_.FinishLoad();

454
455
  #ifdef USE_CUDA
  if (device_type_ == std::string("cuda")) {
456
457
458
459
460
    CreateCUDAColumnData();
    metadata_.CreateCUDAMetadata(gpu_device_id_);
  } else {
    cuda_column_data_.reset(nullptr);
  }
461
  #endif  // USE_CUDA
Guolin Ke's avatar
Guolin Ke committed
462
  is_finish_load_ = true;
Guolin Ke's avatar
Guolin Ke committed
463
}
Guolin Ke's avatar
Guolin Ke committed
464

465
void PushDataToMultiValBin(
Guolin Ke's avatar
Guolin Ke committed
466
    data_size_t num_data, const std::vector<uint32_t> most_freq_bins,
467
    const std::vector<uint32_t> offsets,
Guolin Ke's avatar
Guolin Ke committed
468
    std::vector<std::vector<std::unique_ptr<BinIterator>>>* iters,
469
470
471
    MultiValBin* ret) {
  Common::FunctionTimer fun_time("Dataset::PushDataToMultiValBin",
                                 global_timer);
472
  if (ret->IsSparse()) {
Guolin Ke's avatar
Guolin Ke committed
473
474
475
476
477
    Threading::For<data_size_t>(
        0, num_data, 1024, [&](int tid, data_size_t start, data_size_t end) {
          std::vector<uint32_t> cur_data;
          cur_data.reserve(most_freq_bins.size());
          for (size_t j = 0; j < most_freq_bins.size(); ++j) {
Guolin Ke's avatar
Guolin Ke committed
478
            (*iters)[tid][j]->Reset(start);
479
          }
Guolin Ke's avatar
Guolin Ke committed
480
481
482
          for (data_size_t i = start; i < end; ++i) {
            cur_data.clear();
            for (size_t j = 0; j < most_freq_bins.size(); ++j) {
483
              // for sparse multi value bin, we store the feature bin values with offset added
Guolin Ke's avatar
Guolin Ke committed
484
              auto cur_bin = (*iters)[tid][j]->Get(i);
Guolin Ke's avatar
Guolin Ke committed
485
486
487
488
489
490
491
492
493
494
              if (cur_bin == most_freq_bins[j]) {
                continue;
              }
              cur_bin += offsets[j];
              if (most_freq_bins[j] == 0) {
                cur_bin -= 1;
              }
              cur_data.push_back(cur_bin);
            }
            ret->PushOneRow(tid, i, cur_data);
495
          }
Guolin Ke's avatar
Guolin Ke committed
496
        });
497
  } else {
Guolin Ke's avatar
Guolin Ke committed
498
499
500
501
    Threading::For<data_size_t>(
        0, num_data, 1024, [&](int tid, data_size_t start, data_size_t end) {
          std::vector<uint32_t> cur_data(most_freq_bins.size(), 0);
          for (size_t j = 0; j < most_freq_bins.size(); ++j) {
Guolin Ke's avatar
Guolin Ke committed
502
            (*iters)[tid][j]->Reset(start);
Guolin Ke's avatar
Guolin Ke committed
503
504
505
          }
          for (data_size_t i = start; i < end; ++i) {
            for (size_t j = 0; j < most_freq_bins.size(); ++j) {
506
              // for dense multi value bin, the feature bin values without offsets are used
Guolin Ke's avatar
Guolin Ke committed
507
              auto cur_bin = (*iters)[tid][j]->Get(i);
Guolin Ke's avatar
Guolin Ke committed
508
              cur_data[j] = cur_bin;
509
            }
Guolin Ke's avatar
Guolin Ke committed
510
            ret->PushOneRow(tid, i, cur_data);
511
          }
Guolin Ke's avatar
Guolin Ke committed
512
        });
513
514
515
  }
}

516
MultiValBin* Dataset::GetMultiBinFromSparseFeatures(const std::vector<uint32_t>& offsets) const {
517
518
  Common::FunctionTimer fun_time("Dataset::GetMultiBinFromSparseFeatures",
                                 global_timer);
519
520
521
522
523
524
525
526
527
528
529
530
531
532
  int multi_group_id = -1;
  for (int i = 0; i < num_groups_; ++i) {
    if (feature_groups_[i]->is_multi_val_) {
      if (multi_group_id < 0) {
        multi_group_id = i;
      } else {
        Log::Fatal("Bug. There should be only one multi-val group.");
      }
    }
  }
  if (multi_group_id < 0) {
    return nullptr;
  }
  const int num_feature = feature_groups_[multi_group_id]->num_feature_;
533
  int num_threads = OMP_NUM_THREADS();
534
535
536
537
538

  std::vector<std::vector<std::unique_ptr<BinIterator>>> iters(num_threads);
  std::vector<uint32_t> most_freq_bins;
  double sum_sparse_rate = 0;
  for (int i = 0; i < num_feature; ++i) {
539
#pragma omp parallel for num_threads(OMP_NUM_THREADS()) schedule(static, 1)
540
    for (int tid = 0; tid < num_threads; ++tid) {
541
542
      iters[tid].emplace_back(
          feature_groups_[multi_group_id]->SubFeatureIterator(i));
543
    }
544
545
546
547
    most_freq_bins.push_back(
        feature_groups_[multi_group_id]->bin_mappers_[i]->GetMostFreqBin());
    sum_sparse_rate +=
        feature_groups_[multi_group_id]->bin_mappers_[i]->sparse_rate();
548
549
  }
  sum_sparse_rate /= num_feature;
550
551
  Log::Debug("Dataset::GetMultiBinFromSparseFeatures: sparse rate %f",
             sum_sparse_rate);
552
  std::unique_ptr<MultiValBin> ret;
553
  ret.reset(MultiValBin::CreateMultiValBin(num_data_, offsets.back(),
554
                                           num_feature, sum_sparse_rate, offsets));
Guolin Ke's avatar
Guolin Ke committed
555
  PushDataToMultiValBin(num_data_, most_freq_bins, offsets, &iters, ret.get());
556
557
558
559
  ret->FinishLoad();
  return ret.release();
}

560
MultiValBin* Dataset::GetMultiBinFromAllFeatures(const std::vector<uint32_t>& offsets) const {
561
562
  Common::FunctionTimer fun_time("Dataset::GetMultiBinFromAllFeatures",
                                 global_timer);
563
  int num_threads = OMP_NUM_THREADS();
564
565
566
567
568
  double sum_dense_ratio = 0;

  std::unique_ptr<MultiValBin> ret;
  std::vector<std::vector<std::unique_ptr<BinIterator>>> iters(num_threads);
  std::vector<uint32_t> most_freq_bins;
569
570
571
572
573
574
575
576
577
578
579
580
581
  int ncol = 0;
  for (int gid = 0; gid < num_groups_; ++gid) {
    if (feature_groups_[gid]->is_multi_val_) {
      ncol += feature_groups_[gid]->num_feature_;
    } else {
      ++ncol;
    }
    for (int fid = 0; fid < feature_groups_[gid]->num_feature_; ++fid) {
      const auto& bin_mapper = feature_groups_[gid]->bin_mappers_[fid];
      sum_dense_ratio += 1.0f - bin_mapper->sparse_rate();
    }
  }
  sum_dense_ratio /= ncol;
582
583
584
585
586
  for (int gid = 0; gid < num_groups_; ++gid) {
    if (feature_groups_[gid]->is_multi_val_) {
      for (int fid = 0; fid < feature_groups_[gid]->num_feature_; ++fid) {
        const auto& bin_mapper = feature_groups_[gid]->bin_mappers_[fid];
        most_freq_bins.push_back(bin_mapper->GetMostFreqBin());
587
#pragma omp parallel for num_threads(OMP_NUM_THREADS()) schedule(static, 1)
588
        for (int tid = 0; tid < num_threads; ++tid) {
589
590
          iters[tid].emplace_back(
              feature_groups_[gid]->SubFeatureIterator(fid));
591
592
593
594
595
596
597
598
599
        }
      }
    } else {
      most_freq_bins.push_back(0);
      for (int tid = 0; tid < num_threads; ++tid) {
        iters[tid].emplace_back(feature_groups_[gid]->FeatureGroupIterator());
      }
    }
  }
600
  CHECK(static_cast<int>(most_freq_bins.size()) == ncol);
601
602
603
  Log::Debug("Dataset::GetMultiBinFromAllFeatures: sparse rate %f",
             1.0 - sum_dense_ratio);
  ret.reset(MultiValBin::CreateMultiValBin(
604
      num_data_, offsets.back(), static_cast<int>(most_freq_bins.size()),
605
      1.0 - sum_dense_ratio, offsets));
Guolin Ke's avatar
Guolin Ke committed
606
  PushDataToMultiValBin(num_data_, most_freq_bins, offsets, &iters, ret.get());
607
608
609
610
  ret->FinishLoad();
  return ret.release();
}

611
template <bool USE_QUANT_GRAD, int HIST_BITS>
612
TrainingShareStates* Dataset::GetShareStates(
613
614
    score_t* gradients, score_t* hessians,
    const std::vector<int8_t>& is_feature_used, bool is_constant_hessian,
615
616
    bool force_col_wise, bool force_row_wise,
    const int num_grad_quant_bins) const {
617
618
  Common::FunctionTimer fun_timer("Dataset::TestMultiThreadingMethod",
                                  global_timer);
619
  if (force_col_wise && force_row_wise) {
620
    Log::Fatal(
621
        "Cannot set both of `force_col_wise` and `force_row_wise` to `true` at "
622
        "the same time");
623
624
  }
  if (num_groups_ <= 0) {
625
    TrainingShareStates* share_state = new TrainingShareStates();
626
    share_state->is_col_wise = true;
627
628
    share_state->is_constant_hessian = is_constant_hessian;
    return share_state;
629
  }
630
  if (force_col_wise) {
631
    TrainingShareStates* share_state = new TrainingShareStates();
632
633
634
635
    std::vector<uint32_t> offsets;
    share_state->CalcBinOffsets(
      feature_groups_, &offsets, true);
    share_state->SetMultiValBin(GetMultiBinFromSparseFeatures(offsets),
636
      num_data_, feature_groups_, false, true, num_grad_quant_bins);
637
    share_state->is_col_wise = true;
638
639
    share_state->is_constant_hessian = is_constant_hessian;
    return share_state;
640
  } else if (force_row_wise) {
641
    TrainingShareStates* share_state = new TrainingShareStates();
642
643
644
645
    std::vector<uint32_t> offsets;
    share_state->CalcBinOffsets(
      feature_groups_, &offsets, false);
    share_state->SetMultiValBin(GetMultiBinFromAllFeatures(offsets), num_data_,
646
      feature_groups_, false, false, num_grad_quant_bins);
647
    share_state->is_col_wise = false;
648
649
    share_state->is_constant_hessian = is_constant_hessian;
    return share_state;
650
651
652
  } else {
    std::unique_ptr<MultiValBin> sparse_bin;
    std::unique_ptr<MultiValBin> all_bin;
653
654
655
656
    std::unique_ptr<TrainingShareStates> col_wise_state;
    std::unique_ptr<TrainingShareStates> row_wise_state;
    col_wise_state.reset(new TrainingShareStates());
    row_wise_state.reset(new TrainingShareStates());
657

658
    std::chrono::duration<double, std::milli> col_wise_init_time, row_wise_init_time;
659
    auto start_time = std::chrono::steady_clock::now();
660
661
662
    std::vector<uint32_t> col_wise_offsets;
    col_wise_state->CalcBinOffsets(feature_groups_, &col_wise_offsets, true);
    col_wise_state->SetMultiValBin(GetMultiBinFromSparseFeatures(col_wise_offsets), num_data_,
663
      feature_groups_, false, true, num_grad_quant_bins);
664
    col_wise_init_time = std::chrono::steady_clock::now() - start_time;
665

666
    start_time = std::chrono::steady_clock::now();
667
668
669
    std::vector<uint32_t> row_wise_offsets;
    row_wise_state->CalcBinOffsets(feature_groups_, &row_wise_offsets, false);
    row_wise_state->SetMultiValBin(GetMultiBinFromAllFeatures(row_wise_offsets), num_data_,
670
      feature_groups_, false, false, num_grad_quant_bins);
671
672
673
674
    row_wise_init_time = std::chrono::steady_clock::now() - start_time;

    uint64_t max_total_bin = std::max<uint64_t>(row_wise_state->num_hist_total_bin(),
      col_wise_state->num_hist_total_bin());
675
    std::vector<hist_t, Common::AlignmentAllocator<hist_t, kAlignedSize>>
676
        hist_data(max_total_bin * 2);
677
678

    Log::Debug(
679
680
681
682
683
684
685
686
687
      "init for col-wise cost %f seconds, init for row-wise cost %f seconds",
      col_wise_init_time * 1e-3, row_wise_init_time * 1e-3);

    col_wise_state->is_col_wise = true;
    col_wise_state->is_constant_hessian = is_constant_hessian;
    InitTrain(is_feature_used, col_wise_state.get());
    row_wise_state->is_col_wise = false;
    row_wise_state->is_constant_hessian = is_constant_hessian;
    InitTrain(is_feature_used, row_wise_state.get());
688
    std::chrono::duration<double, std::milli> col_wise_time, row_wise_time;
689
    start_time = std::chrono::steady_clock::now();
690
    ConstructHistograms<USE_QUANT_GRAD, HIST_BITS>(is_feature_used, nullptr, num_data_, gradients,
691
                        hessians, gradients, hessians, col_wise_state.get(),
692
                        hist_data.data());
693
694
    col_wise_time = std::chrono::steady_clock::now() - start_time;
    start_time = std::chrono::steady_clock::now();
695
    ConstructHistograms<USE_QUANT_GRAD, HIST_BITS>(is_feature_used, nullptr, num_data_, gradients,
696
                        hessians, gradients, hessians, row_wise_state.get(),
Guolin Ke's avatar
Guolin Ke committed
697
                        hist_data.data());
698
    row_wise_time = std::chrono::steady_clock::now() - start_time;
699

700
    if (col_wise_time < row_wise_time) {
701
      auto overhead_cost = row_wise_init_time + row_wise_time + col_wise_time;
702
      Log::Info(
703
          "Auto-choosing col-wise multi-threading, the overhead of testing was "
Nikita Titov's avatar
Nikita Titov committed
704
705
          "%f seconds.\n"
          "You can set `force_col_wise=true` to remove the overhead.",
706
          overhead_cost * 1e-3);
707
      return col_wise_state.release();
708
    } else {
709
      auto overhead_cost = col_wise_init_time + row_wise_time + col_wise_time;
710
      Log::Info(
711
          "Auto-choosing row-wise multi-threading, the overhead of testing was "
Nikita Titov's avatar
Nikita Titov committed
712
713
714
          "%f seconds.\n"
          "You can set `force_row_wise=true` to remove the overhead.\n"
          "And if memory is not enough, you can set `force_col_wise=true`.",
715
          overhead_cost * 1e-3);
716
      if (row_wise_state->IsSparseRowwise()) {
717
        Log::Debug("Using Sparse Multi-Val Bin");
718
      } else {
719
        Log::Debug("Using Dense Multi-Val Bin");
720
      }
721
      return row_wise_state.release();
722
723
724
725
    }
  }
}

726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
template TrainingShareStates* Dataset::GetShareStates<false, 0>(
    score_t* gradients, score_t* hessians,
    const std::vector<int8_t>& is_feature_used, bool is_constant_hessian,
    bool force_col_wise, bool force_row_wise,
    const int num_grad_quant_bins) const;

template TrainingShareStates* Dataset::GetShareStates<true, 16>(
    score_t* gradients, score_t* hessians,
    const std::vector<int8_t>& is_feature_used, bool is_constant_hessian,
    bool force_col_wise, bool force_row_wise,
    const int num_grad_quant_bins) const;

template TrainingShareStates* Dataset::GetShareStates<true, 32>(
    score_t* gradients, score_t* hessians,
    const std::vector<int8_t>& is_feature_used, bool is_constant_hessian,
    bool force_col_wise, bool force_row_wise,
    const int num_grad_quant_bins) const;

744
void Dataset::CopyFeatureMapperFrom(const Dataset* dataset) {
Guolin Ke's avatar
Guolin Ke committed
745
  feature_groups_.clear();
Guolin Ke's avatar
Guolin Ke committed
746
  num_features_ = dataset->num_features_;
Guolin Ke's avatar
Guolin Ke committed
747
  num_groups_ = dataset->num_groups_;
748
  has_raw_ = dataset->has_raw();
Guolin Ke's avatar
Guolin Ke committed
749
  // copy feature bin mapper data
Guolin Ke's avatar
Guolin Ke committed
750
  for (int i = 0; i < num_groups_; ++i) {
Guolin Ke's avatar
Guolin Ke committed
751
752
    feature_groups_.emplace_back(
        new FeatureGroup(*dataset->feature_groups_[i], num_data_));
Guolin Ke's avatar
Guolin Ke committed
753
  }
Guolin Ke's avatar
Guolin Ke committed
754
  feature_groups_.shrink_to_fit();
Guolin Ke's avatar
Guolin Ke committed
755
756
757
  used_feature_map_ = dataset->used_feature_map_;
  num_total_features_ = dataset->num_total_features_;
  feature_names_ = dataset->feature_names_;
Guolin Ke's avatar
Guolin Ke committed
758
  label_idx_ = dataset->label_idx_;
Guolin Ke's avatar
Guolin Ke committed
759
760
761
762
763
764
  real_feature_idx_ = dataset->real_feature_idx_;
  feature2group_ = dataset->feature2group_;
  feature2subfeature_ = dataset->feature2subfeature_;
  group_bin_boundaries_ = dataset->group_bin_boundaries_;
  group_feature_start_ = dataset->group_feature_start_;
  group_feature_cnt_ = dataset->group_feature_cnt_;
765
  forced_bin_bounds_ = dataset->forced_bin_bounds_;
Guolin Ke's avatar
Guolin Ke committed
766
  feature_need_push_zeros_ = dataset->feature_need_push_zeros_;
767
768
769
770
771
  max_bin_ = dataset->max_bin_;
  min_data_in_bin_ = dataset->min_data_in_bin_;
  bin_construct_sample_cnt_ = dataset->bin_construct_sample_cnt_;
  use_missing_ = dataset->use_missing_;
  zero_as_missing_ = dataset->zero_as_missing_;
Guolin Ke's avatar
Guolin Ke committed
772
773
774
775
776
777
}

void Dataset::CreateValid(const Dataset* dataset) {
  feature_groups_.clear();
  num_features_ = dataset->num_features_;
  num_groups_ = num_features_;
778
779
780
781
782
  max_bin_ = dataset->max_bin_;
  min_data_in_bin_ = dataset->min_data_in_bin_;
  bin_construct_sample_cnt_ = dataset->bin_construct_sample_cnt_;
  use_missing_ = dataset->use_missing_;
  zero_as_missing_ = dataset->zero_as_missing_;
Guolin Ke's avatar
Guolin Ke committed
783
784
  feature2group_.clear();
  feature2subfeature_.clear();
785
786
787
788
  has_raw_ = dataset->has_raw();
  numeric_feature_map_ = dataset->numeric_feature_map_;
  num_numeric_features_ = dataset->num_numeric_features_;
  // copy feature bin mapper data
Guolin Ke's avatar
Guolin Ke committed
789
  feature_need_push_zeros_.clear();
Guolin Ke's avatar
Guolin Ke committed
790
791
792
793
794
  group_bin_boundaries_.clear();
  uint64_t num_total_bin = 0;
  group_bin_boundaries_.push_back(num_total_bin);
  group_feature_start_.resize(num_groups_);
  group_feature_cnt_.resize(num_groups_);
Guolin Ke's avatar
Guolin Ke committed
795
796
797
  for (int i = 0; i < num_features_; ++i) {
    std::vector<std::unique_ptr<BinMapper>> bin_mappers;
    bin_mappers.emplace_back(new BinMapper(*(dataset->FeatureBinMapper(i))));
Guolin Ke's avatar
Guolin Ke committed
798
799
    if (bin_mappers.back()->GetDefaultBin() !=
        bin_mappers.back()->GetMostFreqBin()) {
Guolin Ke's avatar
Guolin Ke committed
800
801
      feature_need_push_zeros_.push_back(i);
    }
802
    feature_groups_.emplace_back(new FeatureGroup(&bin_mappers, num_data_));
Guolin Ke's avatar
Guolin Ke committed
803
804
    feature2group_.push_back(i);
    feature2subfeature_.push_back(0);
Guolin Ke's avatar
Guolin Ke committed
805
806
807
808
    num_total_bin += feature_groups_[i]->num_total_bin_;
    group_bin_boundaries_.push_back(num_total_bin);
    group_feature_start_[i] = i;
    group_feature_cnt_[i] = 1;
Guolin Ke's avatar
Guolin Ke committed
809
810
811
812
813
814
815
816
  }

  feature_groups_.shrink_to_fit();
  used_feature_map_ = dataset->used_feature_map_;
  num_total_features_ = dataset->num_total_features_;
  feature_names_ = dataset->feature_names_;
  label_idx_ = dataset->label_idx_;
  real_feature_idx_ = dataset->real_feature_idx_;
817
  forced_bin_bounds_ = dataset->forced_bin_bounds_;
818
819
  device_type_ = dataset->device_type_;
  gpu_device_id_ = dataset->gpu_device_id_;
Guolin Ke's avatar
Guolin Ke committed
820
821
}

Guolin Ke's avatar
Guolin Ke committed
822
823
824
void Dataset::ReSize(data_size_t num_data) {
  if (num_data_ != num_data) {
    num_data_ = num_data;
825
    OMP_INIT_EX();
826
#pragma omp parallel for num_threads(OMP_NUM_THREADS()) schedule(static)
Guolin Ke's avatar
Guolin Ke committed
827
    for (int group = 0; group < num_groups_; ++group) {
828
      OMP_LOOP_EX_BEGIN();
Guolin Ke's avatar
Guolin Ke committed
829
      feature_groups_[group]->ReSize(num_data_);
830
      OMP_LOOP_EX_END();
Guolin Ke's avatar
Guolin Ke committed
831
    }
832
    OMP_THROW_EX();
Guolin Ke's avatar
Guolin Ke committed
833
834
835
  }
}

836
void Dataset::CopySubrow(const Dataset* fullset,
Guolin Ke's avatar
Guolin Ke committed
837
838
                         const data_size_t* used_indices,
                         data_size_t num_used_indices, bool need_meta_data) {
Nikita Titov's avatar
Nikita Titov committed
839
  CHECK_EQ(num_used_indices, num_data_);
840
841
842
843

  std::vector<int> group_ids, subfeature_ids;
  group_ids.reserve(num_features_);
  subfeature_ids.reserve(num_features_);
Guolin Ke's avatar
Guolin Ke committed
844
  for (int group = 0; group < num_groups_; ++group) {
845
846
847
848
849
850
851
852
853
854
855
856
857
858
    if (fullset->IsMultiGroup(group)) {
      for (int sub_feature = 0; sub_feature <
          fullset->feature_groups_[group]->num_feature_; ++sub_feature) {
        group_ids.emplace_back(group);
        subfeature_ids.emplace_back(sub_feature);
      }
    } else {
      group_ids.emplace_back(group);
      subfeature_ids.emplace_back(-1);
    }
  }
  int num_copy_tasks = static_cast<int>(group_ids.size());

  OMP_INIT_EX();
859
  #pragma omp parallel for num_threads(OMP_NUM_THREADS()) schedule(dynamic)
860
  for (int task_id = 0; task_id < num_copy_tasks; ++task_id) {
861
    OMP_LOOP_EX_BEGIN();
862
863
864
865
    int group = group_ids[task_id];
    int subfeature = subfeature_ids[task_id];
    feature_groups_[group]->CopySubrowByCol(fullset->feature_groups_[group].get(),
                                            used_indices, num_used_indices, subfeature);
866
    OMP_LOOP_EX_END();
Guolin Ke's avatar
Guolin Ke committed
867
  }
868
  OMP_THROW_EX();
869

Guolin Ke's avatar
Guolin Ke committed
870
  if (need_meta_data) {
Guolin Ke's avatar
Guolin Ke committed
871
    metadata_.Init(fullset->metadata_, used_indices, num_used_indices);
Guolin Ke's avatar
Guolin Ke committed
872
  }
Guolin Ke's avatar
Guolin Ke committed
873
  is_finish_load_ = true;
874
875
876
877
  numeric_feature_map_ = fullset->numeric_feature_map_;
  num_numeric_features_ = fullset->num_numeric_features_;
  if (has_raw_) {
    ResizeRaw(num_used_indices);
878
#pragma omp parallel for num_threads(OMP_NUM_THREADS()) schedule(static)
879
880
881
882
883
884
    for (int i = 0; i < num_used_indices; ++i) {
      for (int j = 0; j < num_numeric_features_; ++j) {
        raw_data_[j][i] = fullset->raw_data_[j][used_indices[i]];
      }
    }
  }
885
886
887
888
  // update CUDA storage for column data and metadata
  device_type_ = fullset->device_type_;
  gpu_device_id_ = fullset->gpu_device_id_;

889
890
  #ifdef USE_CUDA
  if (device_type_ == std::string("cuda")) {
891
892
893
894
895
896
    if (cuda_column_data_ == nullptr) {
      cuda_column_data_.reset(new CUDAColumnData(fullset->num_data(), gpu_device_id_));
      metadata_.CreateCUDAMetadata(gpu_device_id_);
    }
    cuda_column_data_->CopySubrow(fullset->cuda_column_data(), used_indices, num_used_indices);
  }
897
  #endif  // USE_CUDA
Guolin Ke's avatar
Guolin Ke committed
898
899
}

900
901
902
903
904
bool Dataset::SetFieldFromArrow(const char* field_name, const ArrowChunkedArray &ca) {
  std::string name(field_name);
  name = Common::Trim(name);
  if (name == std::string("label") || name == std::string("target")) {
    metadata_.SetLabel(ca);
905
906
  } else if (name == std::string("weight") || name == std::string("weights")) {
    metadata_.SetWeights(ca);
907
908
909
910
911
912
  } else {
    return false;
  }
  return true;
}

Guolin Ke's avatar
Guolin Ke committed
913
914
bool Dataset::SetFloatField(const char* field_name, const float* field_data,
                            data_size_t num_element) {
Guolin Ke's avatar
Guolin Ke committed
915
916
917
  std::string name(field_name);
  name = Common::Trim(name);
  if (name == std::string("label") || name == std::string("target")) {
Guolin Ke's avatar
Guolin Ke committed
918
#ifdef LABEL_T_USE_DOUBLE
919
    Log::Fatal("Don't support LABEL_T_USE_DOUBLE");
Guolin Ke's avatar
Guolin Ke committed
920
#else
921
    metadata_.SetLabel(field_data, num_element);
Guolin Ke's avatar
Guolin Ke committed
922
#endif
Guolin Ke's avatar
Guolin Ke committed
923
  } else if (name == std::string("weight") || name == std::string("weights")) {
Guolin Ke's avatar
Guolin Ke committed
924
#ifdef LABEL_T_USE_DOUBLE
925
    Log::Fatal("Don't support LABEL_T_USE_DOUBLE");
Guolin Ke's avatar
Guolin Ke committed
926
#else
927
    metadata_.SetWeights(field_data, num_element);
Guolin Ke's avatar
Guolin Ke committed
928
#endif
Guolin Ke's avatar
Guolin Ke committed
929
930
931
932
933
934
  } else {
    return false;
  }
  return true;
}

Guolin Ke's avatar
Guolin Ke committed
935
936
bool Dataset::SetDoubleField(const char* field_name, const double* field_data,
                             data_size_t num_element) {
Guolin Ke's avatar
Guolin Ke committed
937
938
939
  std::string name(field_name);
  name = Common::Trim(name);
  if (name == std::string("init_score")) {
940
    metadata_.SetInitScore(field_data, num_element);
Guolin Ke's avatar
Guolin Ke committed
941
  } else {
942
    return false;
Guolin Ke's avatar
Guolin Ke committed
943
  }
944
  return true;
Guolin Ke's avatar
Guolin Ke committed
945
946
}

Guolin Ke's avatar
Guolin Ke committed
947
948
bool Dataset::SetIntField(const char* field_name, const int* field_data,
                          data_size_t num_element) {
949
950
951
  std::string name(field_name);
  name = Common::Trim(name);
  if (name == std::string("query") || name == std::string("group")) {
Guolin Ke's avatar
Guolin Ke committed
952
    metadata_.SetQuery(field_data, num_element);
953
954
  } else if (name == std::string("position")) {
    metadata_.SetPosition(field_data, num_element);
955
956
957
958
959
960
  } else {
    return false;
  }
  return true;
}

Guolin Ke's avatar
Guolin Ke committed
961
962
bool Dataset::GetFloatField(const char* field_name, data_size_t* out_len,
                            const float** out_ptr) {
963
964
965
  std::string name(field_name);
  name = Common::Trim(name);
  if (name == std::string("label") || name == std::string("target")) {
Guolin Ke's avatar
Guolin Ke committed
966
#ifdef LABEL_T_USE_DOUBLE
967
    Log::Fatal("Don't support LABEL_T_USE_DOUBLE");
Guolin Ke's avatar
Guolin Ke committed
968
#else
969
970
    *out_ptr = metadata_.label();
    *out_len = num_data_;
Guolin Ke's avatar
Guolin Ke committed
971
#endif
972
  } else if (name == std::string("weight") || name == std::string("weights")) {
Guolin Ke's avatar
Guolin Ke committed
973
#ifdef LABEL_T_USE_DOUBLE
974
    Log::Fatal("Don't support LABEL_T_USE_DOUBLE");
Guolin Ke's avatar
Guolin Ke committed
975
#else
976
977
    *out_ptr = metadata_.weights();
    *out_len = num_data_;
Guolin Ke's avatar
Guolin Ke committed
978
#endif
Guolin Ke's avatar
Guolin Ke committed
979
980
981
982
983
984
  } else {
    return false;
  }
  return true;
}

Guolin Ke's avatar
Guolin Ke committed
985
986
bool Dataset::GetDoubleField(const char* field_name, data_size_t* out_len,
                             const double** out_ptr) {
Guolin Ke's avatar
Guolin Ke committed
987
988
989
  std::string name(field_name);
  name = Common::Trim(name);
  if (name == std::string("init_score")) {
990
    *out_ptr = metadata_.init_score();
Guolin Ke's avatar
Guolin Ke committed
991
    *out_len = static_cast<data_size_t>(metadata_.num_init_score());
992
  } else {
993
994
    return false;
  }
995
  return true;
996
997
}

Guolin Ke's avatar
Guolin Ke committed
998
999
bool Dataset::GetIntField(const char* field_name, data_size_t* out_len,
                          const int** out_ptr) {
1000
1001
1002
  std::string name(field_name);
  name = Common::Trim(name);
  if (name == std::string("query") || name == std::string("group")) {
1003
    *out_ptr = metadata_.query_boundaries();
Guolin Ke's avatar
Guolin Ke committed
1004
    *out_len = metadata_.num_queries() + 1;
1005
1006
1007
  } else if (name == std::string("position")) {
    *out_ptr = metadata_.positions();
    *out_len = num_data_;
Guolin Ke's avatar
Guolin Ke committed
1008
1009
1010
  } else {
    return false;
  }
1011
  return true;
1012
1013
}

Guolin Ke's avatar
Guolin Ke committed
1014
void Dataset::SaveBinaryFile(const char* bin_filename) {
Guolin Ke's avatar
Guolin Ke committed
1015
  if (bin_filename != nullptr && std::string(bin_filename) == data_filename_) {
1016
    Log::Warning("Binary file %s already exists", bin_filename);
Guolin Ke's avatar
Guolin Ke committed
1017
1018
    return;
  }
Guolin Ke's avatar
Guolin Ke committed
1019
  // if not pass a filename, just append ".bin" of original file
Guolin Ke's avatar
Guolin Ke committed
1020
  std::string bin_filename_str(data_filename_);
Guolin Ke's avatar
Guolin Ke committed
1021
1022
1023
1024
  if (bin_filename == nullptr || bin_filename[0] == '\0') {
    bin_filename_str.append(".bin");
    bin_filename = bin_filename_str.c_str();
  }
Guolin Ke's avatar
Guolin Ke committed
1025
  bool is_file_existed = false;
1026
1027

  if (VirtualFileWriter::Exists(bin_filename)) {
Guolin Ke's avatar
Guolin Ke committed
1028
    is_file_existed = true;
1029
    Log::Warning("File %s exists, cannot save binary to it", bin_filename);
Guolin Ke's avatar
Guolin Ke committed
1030
  }
Guolin Ke's avatar
Guolin Ke committed
1031

Guolin Ke's avatar
Guolin Ke committed
1032
  if (!is_file_existed) {
1033
1034
    auto writer = VirtualFileWriter::Make(bin_filename);
    if (!writer->Init()) {
Guolin Ke's avatar
Guolin Ke committed
1035
      Log::Fatal("Cannot write binary data to %s ", bin_filename);
Guolin Ke's avatar
Guolin Ke committed
1036
    }
1037
    Log::Info("Saving data to binary file %s", bin_filename);
1038
    size_t size_of_token = std::strlen(binary_file_token);
1039
    writer->AlignedWrite(binary_file_token, size_of_token);
1040

1041
1042
    // Write the basic header information for the dataset
    SerializeHeader(writer.get());
1043

Guolin Ke's avatar
Guolin Ke committed
1044
1045
    // get size of meta data
    size_t size_of_metadata = metadata_.SizesInByte();
1046
    writer->Write(&size_of_metadata, sizeof(size_of_metadata));
Guolin Ke's avatar
Guolin Ke committed
1047
    // write meta data
1048
    metadata_.SaveBinaryToFile(writer.get());
Guolin Ke's avatar
Guolin Ke committed
1049
1050

    // write feature data
Guolin Ke's avatar
Guolin Ke committed
1051
    for (int i = 0; i < num_groups_; ++i) {
Guolin Ke's avatar
Guolin Ke committed
1052
      // get size of feature
Guolin Ke's avatar
Guolin Ke committed
1053
      size_t size_of_feature = feature_groups_[i]->SizesInByte();
1054
      writer->Write(&size_of_feature, sizeof(size_of_feature));
Guolin Ke's avatar
Guolin Ke committed
1055
      // write feature
1056
      feature_groups_[i]->SerializeToBinary(writer.get());
Guolin Ke's avatar
Guolin Ke committed
1057
    }
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069

    // write raw data; use row-major order so we can read row-by-row
    if (has_raw_) {
      for (int i = 0; i < num_data_; ++i) {
        for (int j = 0; j < num_features_; ++j) {
          int feat_ind = numeric_feature_map_[j];
          if (feat_ind > -1) {
            writer->Write(&raw_data_[feat_ind][i], sizeof(float));
          }
        }
      }
    }
Guolin Ke's avatar
Guolin Ke committed
1070
1071
1072
  }
}

1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
void Dataset::SerializeReference(ByteBuffer* buffer) {
  Log::Info("Saving data reference to binary buffer");

  // Calculate approximate size of output and reserve space
  size_t size_of_token = std::strlen(binary_serialized_reference_token);
  size_t initial_capacity = size_of_token + GetSerializedHeaderSize();
  // write feature group definitions
  for (int i = 0; i < num_groups_; ++i) {
    initial_capacity += feature_groups_[i]->SizesInByte(/* include_data */ false);
  }

  // Give a little extra just in case, to avoid unnecessary resizes
  buffer->Reserve(static_cast<size_t>(1.1 * static_cast<double>(initial_capacity)));

  // Write token that marks the data as binary reference, and the version
  buffer->AlignedWrite(binary_serialized_reference_token, size_of_token);
  buffer->AlignedWrite(serialized_reference_version, kSerializedReferenceVersionLength);

  // Write the basic definition of the overall dataset
  SerializeHeader(buffer);

  // write feature group definitions
  for (int i = 0; i < num_groups_; ++i) {
    // get size of feature
    size_t size_of_feature = feature_groups_[i]->SizesInByte(false);
    buffer->Write(&size_of_feature, sizeof(size_of_feature));
    // write feature
    feature_groups_[i]->SerializeToBinary(buffer, /* include_data */ false);
  }
}

size_t Dataset::GetSerializedHeaderSize() {
  size_t size_of_header =
    VirtualFileWriter::AlignedSize(sizeof(num_data_)) +
    VirtualFileWriter::AlignedSize(sizeof(num_features_)) +
    VirtualFileWriter::AlignedSize(sizeof(num_total_features_)) +
    VirtualFileWriter::AlignedSize(sizeof(int) * num_total_features_) +
    VirtualFileWriter::AlignedSize(sizeof(label_idx_)) +
    VirtualFileWriter::AlignedSize(sizeof(num_groups_)) +
    3 * VirtualFileWriter::AlignedSize(sizeof(int) * num_features_) +
    sizeof(uint64_t) * (num_groups_ + 1) +
    2 * VirtualFileWriter::AlignedSize(sizeof(int) * num_groups_) +
    VirtualFileWriter::AlignedSize(sizeof(int32_t) * num_total_features_) +
    VirtualFileWriter::AlignedSize(sizeof(int)) * 3 +
    VirtualFileWriter::AlignedSize(sizeof(bool)) * 3;
  // size of feature names and forced bins
  for (int i = 0; i < num_total_features_; ++i) {
    size_of_header +=
      VirtualFileWriter::AlignedSize(feature_names_[i].size()) +
      VirtualFileWriter::AlignedSize(sizeof(int)) +
      forced_bin_bounds_[i].size() * sizeof(double) +
      VirtualFileWriter::AlignedSize(sizeof(int));
  }

  return size_of_header;
}

void Dataset::SerializeHeader(BinaryWriter* writer) {
  size_t size_of_header = GetSerializedHeaderSize();
  writer->Write(&size_of_header, sizeof(size_of_header));

  // write header
  writer->AlignedWrite(&num_data_, sizeof(num_data_));
  writer->AlignedWrite(&num_features_, sizeof(num_features_));
  writer->AlignedWrite(&num_total_features_, sizeof(num_total_features_));
  writer->AlignedWrite(&label_idx_, sizeof(label_idx_));
  writer->AlignedWrite(&max_bin_, sizeof(max_bin_));
  writer->AlignedWrite(&bin_construct_sample_cnt_,
    sizeof(bin_construct_sample_cnt_));
  writer->AlignedWrite(&min_data_in_bin_, sizeof(min_data_in_bin_));
  writer->AlignedWrite(&use_missing_, sizeof(use_missing_));
  writer->AlignedWrite(&zero_as_missing_, sizeof(zero_as_missing_));
  writer->AlignedWrite(&has_raw_, sizeof(has_raw_));
  writer->AlignedWrite(used_feature_map_.data(),
    sizeof(int) * num_total_features_);
  writer->AlignedWrite(&num_groups_, sizeof(num_groups_));
  writer->AlignedWrite(real_feature_idx_.data(), sizeof(int) * num_features_);
  writer->AlignedWrite(feature2group_.data(), sizeof(int) * num_features_);
  writer->AlignedWrite(feature2subfeature_.data(),
    sizeof(int) * num_features_);
  writer->Write(group_bin_boundaries_.data(),
    sizeof(uint64_t) * (num_groups_ + 1));
  writer->AlignedWrite(group_feature_start_.data(),
    sizeof(int) * num_groups_);
  writer->AlignedWrite(group_feature_cnt_.data(), sizeof(int) * num_groups_);
  if (max_bin_by_feature_.empty()) {
    ArrayArgs<int32_t>::Assign(&max_bin_by_feature_, -1, num_total_features_);
  }
  writer->AlignedWrite(max_bin_by_feature_.data(),
    sizeof(int32_t) * num_total_features_);
  if (ArrayArgs<int32_t>::CheckAll(max_bin_by_feature_, -1)) {
    max_bin_by_feature_.clear();
  }
  // write feature names
  for (int i = 0; i < num_total_features_; ++i) {
    int str_len = static_cast<int>(feature_names_[i].size());
    writer->AlignedWrite(&str_len, sizeof(int));
    const char* c_str = feature_names_[i].c_str();
    writer->AlignedWrite(c_str, sizeof(char) * str_len);
  }
  // write forced bins
  for (int i = 0; i < num_total_features_; ++i) {
    int num_bounds = static_cast<int>(forced_bin_bounds_[i].size());
    writer->AlignedWrite(&num_bounds, sizeof(int));

    for (size_t j = 0; j < forced_bin_bounds_[i].size(); ++j) {
      writer->Write(&forced_bin_bounds_[i][j], sizeof(double));
    }
  }
}

1184
void Dataset::DumpTextFile(const char* text_filename) {
Guolin Ke's avatar
Guolin Ke committed
1185
1186
1187
1188
1189
1190
  FILE* file = NULL;
#if _MSC_VER
  fopen_s(&file, text_filename, "wt");
#else
  file = fopen(text_filename, "wt");
#endif
1191
1192
1193
1194
1195
  fprintf(file, "num_features: %d\n", num_features_);
  fprintf(file, "num_total_features: %d\n", num_total_features_);
  fprintf(file, "num_groups: %d\n", num_groups_);
  fprintf(file, "num_data: %d\n", num_data_);
  fprintf(file, "feature_names: ");
1196
  for (auto n : feature_names_) {
1197
1198
    fprintf(file, "%s, ", n.c_str());
  }
Belinda Trotta's avatar
Belinda Trotta committed
1199
1200
1201
1202
  fprintf(file, "\nmax_bin_by_feature: ");
  for (auto i : max_bin_by_feature_) {
    fprintf(file, "%d, ", i);
  }
1203
  fprintf(file, "\n");
1204
  for (auto n : feature_names_) {
1205
1206
    fprintf(file, "%s, ", n.c_str());
  }
1207
1208
1209
1210
1211
1212
1213
  fprintf(file, "\nforced_bins: ");
  for (int i = 0; i < num_total_features_; ++i) {
    fprintf(file, "\nfeature %d: ", i);
    for (size_t j = 0; j < forced_bin_bounds_[i].size(); ++j) {
      fprintf(file, "%lf, ", forced_bin_bounds_[i][j]);
    }
  }
1214
1215
  std::vector<std::unique_ptr<BinIterator>> iterators;
  iterators.reserve(num_features_);
1216
  for (int j = 0; j < num_features_; ++j) {
1217
1218
    auto group_idx = feature2group_[j];
    auto sub_idx = feature2subfeature_[j];
Guolin Ke's avatar
Guolin Ke committed
1219
1220
    iterators.emplace_back(
        feature_groups_[group_idx]->SubFeatureIterator(sub_idx));
1221
  }
1222
  for (data_size_t i = 0; i < num_data_; ++i) {
1223
    fprintf(file, "\n");
1224
    for (int j = 0; j < num_total_features_; ++j) {
1225
      auto inner_feature_idx = used_feature_map_[j];
1226
1227
      if (inner_feature_idx < 0) {
        fprintf(file, "NA, ");
1228
      } else {
Guolin Ke's avatar
Guolin Ke committed
1229
        fprintf(file, "%d, ", iterators[inner_feature_idx]->Get(i));
1230
1231
1232
1233
1234
1235
      }
    }
  }
  fclose(file);
}

1236
void Dataset::InitTrain(const std::vector<int8_t>& is_feature_used,
1237
                        TrainingShareStates* share_state) const {
1238
  Common::FunctionTimer fun_time("Dataset::InitTrain", global_timer);
1239
1240
1241
  share_state->InitTrain(group_feature_start_,
        feature_groups_,
        is_feature_used);
1242
1243
}

1244
template <bool USE_INDICES, bool ORDERED, bool USE_QUANT_GRAD, int HIST_BITS>
1245
1246
1247
1248
1249
1250
void Dataset::ConstructHistogramsMultiVal(const data_size_t* data_indices,
                                          data_size_t num_data,
                                          const score_t* gradients,
                                          const score_t* hessians,
                                          TrainingShareStates* share_state,
                                          hist_t* hist_data) const {
1251
1252
  Common::FunctionTimer fun_time("Dataset::ConstructHistogramsMultiVal",
                                 global_timer);
1253
  share_state->ConstructHistograms<USE_INDICES, ORDERED, USE_QUANT_GRAD, HIST_BITS>(
1254
      data_indices, num_data, gradients, hessians, hist_data);
1255
1256
}

1257
template <bool USE_INDICES, bool USE_HESSIAN, bool USE_QUANT_GRAD, int HIST_BITS>
Guolin Ke's avatar
Guolin Ke committed
1258
void Dataset::ConstructHistogramsInner(
1259
1260
1261
    const std::vector<int8_t>& is_feature_used, const data_size_t* data_indices,
    data_size_t num_data, const score_t* gradients, const score_t* hessians,
    score_t* ordered_gradients, score_t* ordered_hessians,
1262
    TrainingShareStates* share_state, hist_t* hist_data) const {
1263
  if (!share_state->is_col_wise) {
1264
    return ConstructHistogramsMultiVal<USE_INDICES, false, USE_QUANT_GRAD, HIST_BITS>(
Guolin Ke's avatar
Guolin Ke committed
1265
        data_indices, num_data, gradients, hessians, share_state, hist_data);
1266
1267
1268
1269
  }
  std::vector<int> used_dense_group;
  int multi_val_groud_id = -1;
  used_dense_group.reserve(num_groups_);
Guolin Ke's avatar
Guolin Ke committed
1270
  for (int group = 0; group < num_groups_; ++group) {
Guolin Ke's avatar
Guolin Ke committed
1271
    const int f_start = group_feature_start_[group];
Guolin Ke's avatar
Guolin Ke committed
1272
    const int f_cnt = group_feature_cnt_[group];
1273
    bool is_group_used = false;
Guolin Ke's avatar
Guolin Ke committed
1274
    for (int j = 0; j < f_cnt; ++j) {
Guolin Ke's avatar
Guolin Ke committed
1275
      const int fidx = f_start + j;
Guolin Ke's avatar
Guolin Ke committed
1276
      if (is_feature_used[fidx]) {
1277
        is_group_used = true;
Guolin Ke's avatar
Guolin Ke committed
1278
1279
1280
        break;
      }
    }
1281
    if (is_group_used) {
1282
1283
1284
1285
      if (feature_groups_[group]->is_multi_val_) {
        multi_val_groud_id = group;
      } else {
        used_dense_group.push_back(group);
1286
      }
Guolin Ke's avatar
Guolin Ke committed
1287
    }
1288
1289
1290
  }
  int num_used_dense_group = static_cast<int>(used_dense_group.size());
  global_timer.Start("Dataset::dense_bin_histogram");
Guolin Ke's avatar
Guolin Ke committed
1291
1292
  auto ptr_ordered_grad = gradients;
  auto ptr_ordered_hess = hessians;
1293
  if (num_used_dense_group > 0) {
1294
1295
1296
1297
    if (USE_QUANT_GRAD) {
      int16_t* ordered_gradients_and_hessians = reinterpret_cast<int16_t*>(ordered_gradients);
      const int16_t* gradients_and_hessians = reinterpret_cast<const int16_t*>(gradients);
      if (USE_INDICES) {
1298
  #pragma omp parallel for num_threads(OMP_NUM_THREADS()) schedule(static, 512) if (num_data >= 1024)
1299
        for (data_size_t i = 0; i < num_data; ++i) {
1300
          ordered_gradients_and_hessians[i] = gradients_and_hessians[data_indices[i]];
1301
        }
1302
1303
1304
1305
1306
1307
        ptr_ordered_grad = reinterpret_cast<const score_t*>(ordered_gradients);
        ptr_ordered_hess = nullptr;
      }
    } else {
      if (USE_INDICES) {
        if (USE_HESSIAN) {
1308
  #pragma omp parallel for num_threads(OMP_NUM_THREADS()) schedule(static, 512) if (num_data >= 1024)
1309
1310
1311
1312
1313
1314
1315
          for (data_size_t i = 0; i < num_data; ++i) {
            ordered_gradients[i] = gradients[data_indices[i]];
            ordered_hessians[i] = hessians[data_indices[i]];
          }
          ptr_ordered_grad = ordered_gradients;
          ptr_ordered_hess = ordered_hessians;
        } else {
1316
  #pragma omp parallel for num_threads(OMP_NUM_THREADS()) schedule(static, 512) if (num_data >= 1024)
1317
1318
1319
1320
          for (data_size_t i = 0; i < num_data; ++i) {
            ordered_gradients[i] = gradients[data_indices[i]];
          }
          ptr_ordered_grad = ordered_gradients;
1321
1322
        }
      }
Guolin Ke's avatar
Guolin Ke committed
1323
1324
    }
    OMP_INIT_EX();
1325
#pragma omp parallel for schedule(static) num_threads(share_state->num_threads)
Guolin Ke's avatar
Guolin Ke committed
1326
1327
1328
1329
    for (int gi = 0; gi < num_used_dense_group; ++gi) {
      OMP_LOOP_EX_BEGIN();
      int group = used_dense_group[gi];
      const int num_bin = feature_groups_[group]->num_total_bin_;
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
      if (USE_QUANT_GRAD) {
        if (HIST_BITS == 16) {
          auto data_ptr = reinterpret_cast<hist_t*>(reinterpret_cast<int32_t*>(hist_data) + group_bin_boundaries_[group]);
          std::memset(reinterpret_cast<void*>(data_ptr), 0,
                      num_bin * kInt16HistEntrySize);
          if (USE_HESSIAN) {
            if (USE_INDICES) {
              feature_groups_[group]->bin_data_->ConstructHistogramInt16(
                  data_indices, 0, num_data, ptr_ordered_grad, ptr_ordered_hess,
                  data_ptr);
            } else {
              feature_groups_[group]->bin_data_->ConstructHistogramInt16(
                  0, num_data, ptr_ordered_grad, ptr_ordered_hess, data_ptr);
            }
          } else {
            if (USE_INDICES) {
              feature_groups_[group]->bin_data_->ConstructHistogramInt16(
                  data_indices, 0, num_data, ptr_ordered_grad,
                  data_ptr);
            } else {
              feature_groups_[group]->bin_data_->ConstructHistogramInt16(
                  0, num_data, ptr_ordered_grad, data_ptr);
            }
          }
Guolin Ke's avatar
Guolin Ke committed
1354
        } else {
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
          auto data_ptr = hist_data + group_bin_boundaries_[group];
          std::memset(reinterpret_cast<void*>(data_ptr), 0,
                      num_bin * kInt32HistEntrySize);
          if (USE_HESSIAN) {
            if (USE_INDICES) {
              feature_groups_[group]->bin_data_->ConstructHistogramInt32(
                  data_indices, 0, num_data, ptr_ordered_grad, ptr_ordered_hess,
                  data_ptr);
            } else {
              feature_groups_[group]->bin_data_->ConstructHistogramInt32(
                  0, num_data, ptr_ordered_grad, ptr_ordered_hess, data_ptr);
            }
          } else {
            if (USE_INDICES) {
              feature_groups_[group]->bin_data_->ConstructHistogramInt32(
                  data_indices, 0, num_data, ptr_ordered_grad,
                  data_ptr);
            } else {
              feature_groups_[group]->bin_data_->ConstructHistogramInt32(
                  0, num_data, ptr_ordered_grad, data_ptr);
            }
          }
1377
        }
1378
      } else {
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
        auto data_ptr = hist_data + group_bin_boundaries_[group] * 2;
        std::memset(reinterpret_cast<void*>(data_ptr), 0,
                    num_bin * kHistEntrySize);
        if (USE_HESSIAN) {
          if (USE_INDICES) {
            feature_groups_[group]->bin_data_->ConstructHistogram(
                data_indices, 0, num_data, ptr_ordered_grad, ptr_ordered_hess,
                data_ptr);
          } else {
            feature_groups_[group]->bin_data_->ConstructHistogram(
                0, num_data, ptr_ordered_grad, ptr_ordered_hess, data_ptr);
          }
Guolin Ke's avatar
Guolin Ke committed
1391
        } else {
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
          if (USE_INDICES) {
            feature_groups_[group]->bin_data_->ConstructHistogram(
                data_indices, 0, num_data, ptr_ordered_grad, data_ptr);
          } else {
            feature_groups_[group]->bin_data_->ConstructHistogram(
                0, num_data, ptr_ordered_grad, data_ptr);
          }
          auto cnt_dst = reinterpret_cast<hist_cnt_t*>(data_ptr + 1);
          for (int i = 0; i < num_bin * 2; i += 2) {
            data_ptr[i + 1] = static_cast<double>(cnt_dst[i]) * hessians[0];
          }
Guolin Ke's avatar
Guolin Ke committed
1403
        }
1404
      }
Guolin Ke's avatar
Guolin Ke committed
1405
      OMP_LOOP_EX_END();
Guolin Ke's avatar
Guolin Ke committed
1406
    }
Guolin Ke's avatar
Guolin Ke committed
1407
    OMP_THROW_EX();
Guolin Ke's avatar
Guolin Ke committed
1408
  }
1409
1410
  global_timer.Stop("Dataset::dense_bin_histogram");
  if (multi_val_groud_id >= 0) {
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
    if (USE_QUANT_GRAD) {
      if (HIST_BITS == 32) {
        int32_t* hist_data_ptr = reinterpret_cast<int32_t*>(hist_data);
        if (num_used_dense_group > 0) {
          ConstructHistogramsMultiVal<USE_INDICES, true, USE_QUANT_GRAD, HIST_BITS>(
              data_indices, num_data, ptr_ordered_grad, ptr_ordered_hess,
              share_state,
              reinterpret_cast<hist_t*>(hist_data_ptr + group_bin_boundaries_[multi_val_groud_id] * 2));
        } else {
          ConstructHistogramsMultiVal<USE_INDICES, false, USE_QUANT_GRAD, HIST_BITS>(
              data_indices, num_data, gradients, hessians, share_state,
              reinterpret_cast<hist_t*>(hist_data_ptr + group_bin_boundaries_[multi_val_groud_id] * 2));
        }
      } else if (HIST_BITS == 16) {
        int16_t* hist_data_ptr = reinterpret_cast<int16_t*>(hist_data);
        if (num_used_dense_group > 0) {
          ConstructHistogramsMultiVal<USE_INDICES, true, USE_QUANT_GRAD, HIST_BITS>(
              data_indices, num_data, ptr_ordered_grad, ptr_ordered_hess,
              share_state,
              reinterpret_cast<hist_t*>(hist_data_ptr + group_bin_boundaries_[multi_val_groud_id] * 2));
        } else {
          ConstructHistogramsMultiVal<USE_INDICES, false, USE_QUANT_GRAD, HIST_BITS>(
              data_indices, num_data, gradients, hessians, share_state,
              reinterpret_cast<hist_t*>(hist_data_ptr + group_bin_boundaries_[multi_val_groud_id] * 2));
        }
      }
Guolin Ke's avatar
Guolin Ke committed
1437
    } else {
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
      if (num_used_dense_group > 0) {
        ConstructHistogramsMultiVal<USE_INDICES, true, USE_QUANT_GRAD, HIST_BITS>(
            data_indices, num_data, ptr_ordered_grad, ptr_ordered_hess,
            share_state,
            hist_data + group_bin_boundaries_[multi_val_groud_id] * 2);
      } else {
        ConstructHistogramsMultiVal<USE_INDICES, false, USE_QUANT_GRAD, HIST_BITS>(
            data_indices, num_data, gradients, hessians, share_state,
            hist_data + group_bin_boundaries_[multi_val_groud_id] * 2);
      }
Guolin Ke's avatar
Guolin Ke committed
1448
    }
1449
  }
Guolin Ke's avatar
Guolin Ke committed
1450
1451
}

James Lamb's avatar
James Lamb committed
1452
// explicitly initialize template methods, for cross module call
1453
1454
1455
1456
1457
#define CONSTRUCT_HISTOGRAMS_INNER_PARMA \
  const std::vector<int8_t>& is_feature_used, const data_size_t* data_indices, \
  data_size_t num_data, const score_t* gradients, const score_t* hessians, \
  score_t* ordered_gradients, score_t* ordered_hessians, \
  TrainingShareStates* share_state, hist_t* hist_data
Guolin Ke's avatar
Guolin Ke committed
1458

1459
1460
// explicitly initialize template methods, for cross module call
template void Dataset::ConstructHistogramsInner<true, true, false, 0>(CONSTRUCT_HISTOGRAMS_INNER_PARMA) const;
Guolin Ke's avatar
Guolin Ke committed
1461

1462
template void Dataset::ConstructHistogramsInner<true, false, false, 0>(CONSTRUCT_HISTOGRAMS_INNER_PARMA) const;
Guolin Ke's avatar
Guolin Ke committed
1463

1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
template void Dataset::ConstructHistogramsInner<false, true, false, 0>(CONSTRUCT_HISTOGRAMS_INNER_PARMA) const;

template void Dataset::ConstructHistogramsInner<false, false, false, 0>(CONSTRUCT_HISTOGRAMS_INNER_PARMA) const;

template void Dataset::ConstructHistogramsInner<true, true, true, 16>(CONSTRUCT_HISTOGRAMS_INNER_PARMA) const;

template void Dataset::ConstructHistogramsInner<true, false, true, 16>(CONSTRUCT_HISTOGRAMS_INNER_PARMA) const;

template void Dataset::ConstructHistogramsInner<false, true, true, 16>(CONSTRUCT_HISTOGRAMS_INNER_PARMA) const;

template void Dataset::ConstructHistogramsInner<false, false, true, 16>(CONSTRUCT_HISTOGRAMS_INNER_PARMA) const;

template void Dataset::ConstructHistogramsInner<true, true, true, 32>(CONSTRUCT_HISTOGRAMS_INNER_PARMA) const;

template void Dataset::ConstructHistogramsInner<true, false, true, 32>(CONSTRUCT_HISTOGRAMS_INNER_PARMA) const;

template void Dataset::ConstructHistogramsInner<false, true, true, 32>(CONSTRUCT_HISTOGRAMS_INNER_PARMA) const;

template void Dataset::ConstructHistogramsInner<false, false, true, 32>(CONSTRUCT_HISTOGRAMS_INNER_PARMA) const;
Guolin Ke's avatar
Guolin Ke committed
1483

Guolin Ke's avatar
Guolin Ke committed
1484
1485
void Dataset::FixHistogram(int feature_idx, double sum_gradient,
                           double sum_hessian, hist_t* data) const {
Guolin Ke's avatar
Guolin Ke committed
1486
1487
  const int group = feature2group_[feature_idx];
  const int sub_feature = feature2subfeature_[feature_idx];
Guolin Ke's avatar
Guolin Ke committed
1488
1489
  const BinMapper* bin_mapper =
      feature_groups_[group]->bin_mappers_[sub_feature].get();
Guolin Ke's avatar
Guolin Ke committed
1490
1491
  const int most_freq_bin = bin_mapper->GetMostFreqBin();
  if (most_freq_bin > 0) {
Guolin Ke's avatar
Guolin Ke committed
1492
    const int num_bin = bin_mapper->num_bin();
1493
1494
    GET_GRAD(data, most_freq_bin) = sum_gradient;
    GET_HESS(data, most_freq_bin) = sum_hessian;
Guolin Ke's avatar
Guolin Ke committed
1495
    for (int i = 0; i < num_bin; ++i) {
Guolin Ke's avatar
Guolin Ke committed
1496
      if (i != most_freq_bin) {
1497
1498
        GET_GRAD(data, most_freq_bin) -= GET_GRAD(data, i);
        GET_HESS(data, most_freq_bin) -= GET_HESS(data, i);
Guolin Ke's avatar
Guolin Ke committed
1499
1500
1501
1502
1503
      }
    }
  }
}

1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
template <typename PACKED_HIST_BIN_T, typename PACKED_HIST_ACC_T, int HIST_BITS_BIN, int HIST_BITS_ACC>
void Dataset::FixHistogramInt(int feature_idx, int64_t int_sum_gradient_and_hessian, hist_t* data) const {
  const int group = feature2group_[feature_idx];
  const int sub_feature = feature2subfeature_[feature_idx];
  const BinMapper* bin_mapper =
      feature_groups_[group]->bin_mappers_[sub_feature].get();
  const int most_freq_bin = bin_mapper->GetMostFreqBin();
  PACKED_HIST_BIN_T* data_ptr = reinterpret_cast<PACKED_HIST_BIN_T*>(data);
  PACKED_HIST_ACC_T int_sum_gradient_and_hessian_local = HIST_BITS_ACC == 16 ?
    ((static_cast<int32_t>(int_sum_gradient_and_hessian >> 32) << 16) |
    static_cast<int32_t>(int_sum_gradient_and_hessian & 0x0000ffff)) :
    int_sum_gradient_and_hessian;
  if (most_freq_bin > 0) {
    const int num_bin = bin_mapper->num_bin();
    if (HIST_BITS_BIN == HIST_BITS_ACC) {
      for (int i = 0; i < num_bin; ++i) {
        if (i != most_freq_bin) {
          int_sum_gradient_and_hessian_local -= data_ptr[i];
        }
      }
      data_ptr[most_freq_bin] = int_sum_gradient_and_hessian_local;
    } else {
      CHECK_EQ(HIST_BITS_ACC, 32);
      CHECK_EQ(HIST_BITS_BIN, 16);
      for (int i = 0; i < num_bin; ++i) {
        if (i != most_freq_bin) {
          const PACKED_HIST_BIN_T packed_hist = data_ptr[i];
          const PACKED_HIST_ACC_T packed_hist_acc = (static_cast<int64_t>(static_cast<int16_t>(packed_hist >> 16)) << 32) |
            static_cast<int64_t>(packed_hist & 0x0000ffff);
          int_sum_gradient_and_hessian_local -= packed_hist_acc;
        }
      }
      PACKED_HIST_BIN_T int_sum_gradient_and_hessian_local_bin =
        (static_cast<int32_t>(int_sum_gradient_and_hessian_local >> 32) << 16) | static_cast<int32_t>(int_sum_gradient_and_hessian_local & 0x0000ffff);
      data_ptr[most_freq_bin] = int_sum_gradient_and_hessian_local_bin;
    }
  }
}

template void Dataset::FixHistogramInt<int64_t, int64_t, 32, 32>(int feature_idx, int64_t int_sum_gradient_and_hessian, hist_t* data) const;

template void Dataset::FixHistogramInt<int32_t, int32_t, 16, 16>(int feature_idx, int64_t int_sum_gradient_and_hessian, hist_t* data) const;

Guolin Ke's avatar
Guolin Ke committed
1547
template <typename T>
Guolin Ke's avatar
Guolin Ke committed
1548
1549
void PushVector(std::vector<T>* dest, const std::vector<T>& src) {
  dest->reserve(dest->size() + src.size());
1550
  for (auto i : src) {
Guolin Ke's avatar
Guolin Ke committed
1551
    dest->push_back(i);
1552
1553
1554
  }
}

Guolin Ke's avatar
Guolin Ke committed
1555
1556
1557
template <typename T>
void PushOffset(std::vector<T>* dest, const std::vector<T>& src,
                const T& offset) {
Guolin Ke's avatar
Guolin Ke committed
1558
  dest->reserve(dest->size() + src.size());
1559
  for (auto i : src) {
Guolin Ke's avatar
Guolin Ke committed
1560
    dest->push_back(i + offset);
1561
1562
1563
  }
}

Guolin Ke's avatar
Guolin Ke committed
1564
1565
1566
1567
template <typename T>
void PushClearIfEmpty(std::vector<T>* dest, const size_t dest_len,
                      const std::vector<T>& src, const size_t src_len,
                      const T& deflt) {
Guolin Ke's avatar
Guolin Ke committed
1568
  if (!dest->empty() && !src.empty()) {
1569
    PushVector(dest, src);
Guolin Ke's avatar
Guolin Ke committed
1570
  } else if (!dest->empty() && src.empty()) {
1571
    for (size_t i = 0; i < src_len; ++i) {
Guolin Ke's avatar
Guolin Ke committed
1572
      dest->push_back(deflt);
1573
    }
Guolin Ke's avatar
Guolin Ke committed
1574
  } else if (dest->empty() && !src.empty()) {
1575
    for (size_t i = 0; i < dest_len; ++i) {
Guolin Ke's avatar
Guolin Ke committed
1576
      dest->push_back(deflt);
1577
1578
1579
1580
1581
    }
    PushVector(dest, src);
  }
}

1582
void Dataset::AddFeaturesFrom(Dataset* other) {
1583
  if (other->num_data_ != num_data_) {
1584
    Log::Fatal(
Guolin Ke's avatar
Guolin Ke committed
1585
1586
        "Cannot add features from other Dataset with a different number of "
        "rows");
1587
  }
1588
1589
1590
  if (other->has_raw_ != has_raw_) {
    Log::Fatal("Can only add features from other Dataset if both or neither have raw data.");
  }
Guolin Ke's avatar
Guolin Ke committed
1591
1592
1593
1594
1595
  int mv_gid = -1;
  int other_mv_gid = -1;
  for (int i = 0; i < num_groups_; ++i) {
    if (IsMultiGroup(i)) {
      mv_gid = i;
1596
1597
    }
  }
Guolin Ke's avatar
Guolin Ke committed
1598
1599
1600
1601
  for (int i = 0; i < other->num_groups_; ++i) {
    if (other->IsMultiGroup(i)) {
      other_mv_gid = i;
    }
1602
  }
Guolin Ke's avatar
Guolin Ke committed
1603
1604
1605
1606
1607
1608
  // Only one multi-val group, just simply merge
  if (mv_gid < 0 || other_mv_gid < 0) {
    PushVector(&feature2subfeature_, other->feature2subfeature_);
    PushVector(&group_feature_cnt_, other->group_feature_cnt_);
    feature_groups_.reserve(other->feature_groups_.size());
    for (auto& fg : other->feature_groups_) {
1609
1610
      const int cur_group_id = static_cast<int>(feature_groups_.size());
      feature_groups_.emplace_back(new FeatureGroup(*fg, true, cur_group_id));
Guolin Ke's avatar
Guolin Ke committed
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
    }
    for (auto feature_idx : other->used_feature_map_) {
      if (feature_idx >= 0) {
        used_feature_map_.push_back(feature_idx + num_features_);
      } else {
        used_feature_map_.push_back(-1);  // Unused feature.
      }
    }
    PushOffset(&real_feature_idx_, other->real_feature_idx_,
               num_total_features_);
    PushOffset(&feature2group_, other->feature2group_, num_groups_);
    auto bin_offset = group_bin_boundaries_.back();
    // Skip the leading 0 when copying group_bin_boundaries.
    for (auto i = other->group_bin_boundaries_.begin() + 1;
         i < other->group_bin_boundaries_.end(); ++i) {
      group_bin_boundaries_.push_back(*i + bin_offset);
    }
    PushOffset(&group_feature_start_, other->group_feature_start_,
               num_features_);
    num_groups_ += other->num_groups_;
    num_features_ += other->num_features_;
  } else {
    std::vector<std::vector<int>> features_in_group;
    for (int i = 0; i < num_groups_; ++i) {
      int f_start = group_feature_start_[i];
      int f_cnt = group_feature_cnt_[i];
      features_in_group.emplace_back();
      for (int j = 0; j < f_cnt; ++j) {
1639
1640
        const int real_fidx = real_feature_idx_[f_start + j];
        features_in_group.back().push_back(real_fidx);
Guolin Ke's avatar
Guolin Ke committed
1641
1642
1643
      }
    }
    feature_groups_[mv_gid]->AddFeaturesFrom(
1644
        other->feature_groups_[other_mv_gid].get(), mv_gid);
Guolin Ke's avatar
Guolin Ke committed
1645
1646
1647
1648
1649
    for (int i = 0; i < other->num_groups_; ++i) {
      int f_start = other->group_feature_start_[i];
      int f_cnt = other->group_feature_cnt_[i];
      if (i == other_mv_gid) {
        for (int j = 0; j < f_cnt; ++j) {
1650
1651
          const int real_fidx = other->real_feature_idx_[f_start + j] + num_total_features_;
          features_in_group[mv_gid].push_back(real_fidx);
Guolin Ke's avatar
Guolin Ke committed
1652
1653
1654
1655
        }
      } else {
        features_in_group.emplace_back();
        for (int j = 0; j < f_cnt; ++j) {
1656
1657
          const int real_fidx = other->real_feature_idx_[f_start + j] + num_total_features_;
          features_in_group.back().push_back(real_fidx);
Guolin Ke's avatar
Guolin Ke committed
1658
1659
        }
        feature_groups_.emplace_back(
1660
            new FeatureGroup(*other->feature_groups_[i], false, -1));
Guolin Ke's avatar
Guolin Ke committed
1661
1662
1663
1664
1665
1666
1667
      }
    }
    // regenerate other fields
    num_groups_ += other->num_groups_ - 1;
    CHECK(num_groups_ == static_cast<int>(features_in_group.size()));
    num_features_ += other->num_features_;
    int cur_fidx = 0;
1668
1669
    used_feature_map_ =
      std::vector<int>(num_total_features_ + other->num_total_features_, -1);
Guolin Ke's avatar
Guolin Ke committed
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
    real_feature_idx_.resize(num_features_);
    feature2group_.resize(num_features_);
    feature2subfeature_.resize(num_features_);
    group_feature_start_.resize(num_groups_);
    group_feature_cnt_.resize(num_groups_);

    group_bin_boundaries_.clear();
    uint64_t num_total_bin = 0;
    group_bin_boundaries_.push_back(num_total_bin);
    for (int i = 0; i < num_groups_; ++i) {
      auto cur_features = features_in_group[i];
      int cur_cnt_features = static_cast<int>(cur_features.size());
      group_feature_start_[i] = cur_fidx;
      group_feature_cnt_[i] = cur_cnt_features;
      for (int j = 0; j < cur_cnt_features; ++j) {
        int real_fidx = cur_features[j];
        used_feature_map_[real_fidx] = cur_fidx;
        real_feature_idx_[cur_fidx] = real_fidx;
        feature2group_[cur_fidx] = i;
        feature2subfeature_[cur_fidx] = j;
        ++cur_fidx;
      }
      num_total_bin += feature_groups_[i]->num_total_bin_;
      group_bin_boundaries_.push_back(num_total_bin);
    }
  }
  std::unordered_set<std::string> feature_names_set;
  for (const auto& val : feature_names_) {
    feature_names_set.emplace(val);
  }
  for (const auto& val : other->feature_names_) {
    std::string new_name = val;
    int cnt = 2;
    while (feature_names_set.count(new_name)) {
      new_name = "D" + std::to_string(cnt) + "_" + val;
      ++cnt;
    }
    if (new_name != val) {
      Log::Warning(
        "Find the same feature name (%s) in Dataset::AddFeaturesFrom, change "
        "its name to (%s)",
        val.c_str(), new_name.c_str());
    }
    feature_names_set.emplace(new_name);
    feature_names_.push_back(new_name);
  }
  PushVector(&forced_bin_bounds_, other->forced_bin_bounds_);
  PushClearIfEmpty(&max_bin_by_feature_, num_total_features_,
                   other->max_bin_by_feature_, other->num_total_features_, -1);
1719
  num_total_features_ += other->num_total_features_;
1720
  for (size_t i = 0; i < (other->numeric_feature_map_).size(); ++i) {
1721
    int feat_ind = other->numeric_feature_map_[i];
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
    if (feat_ind > -1) {
      numeric_feature_map_.push_back(feat_ind + num_numeric_features_);
    } else {
      numeric_feature_map_.push_back(-1);
    }
  }
  num_numeric_features_ += other->num_numeric_features_;
  if (has_raw_) {
    for (int i = 0; i < other->num_numeric_features_; ++i) {
      raw_data_.push_back(other->raw_data_[i]);
    }
  }
1734
1735
  #ifdef USE_CUDA
  if (device_type_ == std::string("cuda")) {
1736
1737
1738
1739
    CreateCUDAColumnData();
  } else {
    cuda_column_data_ = nullptr;
  }
1740
  #endif  // USE_CUDA
1741
1742
}

1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
const void* Dataset::GetColWiseData(
  const int feature_group_index,
  const int sub_feature_index,
  uint8_t* bit_type,
  bool* is_sparse,
  std::vector<BinIterator*>* bin_iterator,
  const int num_threads) const {
  return feature_groups_[feature_group_index]->GetColWiseData(sub_feature_index, bit_type, is_sparse, bin_iterator, num_threads);
}

const void* Dataset::GetColWiseData(
  const int feature_group_index,
  const int sub_feature_index,
  uint8_t* bit_type,
  bool* is_sparse,
  BinIterator** bin_iterator) const {
  return feature_groups_[feature_group_index]->GetColWiseData(sub_feature_index, bit_type, is_sparse, bin_iterator);
}

1762
#ifdef USE_CUDA
1763
1764
1765
1766
1767
1768
1769
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
1843
1844
1845
1846
1847
1848
1849
1850
1851
1852
1853
1854
1855
1856
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
1867
1868
1869
1870
1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
1884
1885
1886
1887
1888
1889
1890
1891
1892
1893
1894
1895
1896
void Dataset::CreateCUDAColumnData() {
  cuda_column_data_.reset(new CUDAColumnData(num_data_, gpu_device_id_));
  int num_columns = 0;
  std::vector<const void*> column_data;
  std::vector<BinIterator*> column_bin_iterator;
  std::vector<uint8_t> column_bit_type;
  int feature_index = 0;
  std::vector<int> feature_to_column(num_features_, -1);
  std::vector<uint32_t> feature_max_bins(num_features_, 0);
  std::vector<uint32_t> feature_min_bins(num_features_, 0);
  std::vector<uint32_t> feature_offsets(num_features_, 0);
  std::vector<uint32_t> feature_most_freq_bins(num_features_, 0);
  std::vector<uint32_t> feature_default_bin(num_features_, 0);
  std::vector<uint8_t> feature_missing_is_zero(num_features_, 0);
  std::vector<uint8_t> feature_missing_is_na(num_features_, 0);
  std::vector<uint8_t> feature_mfb_is_zero(num_features_, 0);
  std::vector<uint8_t> feature_mfb_is_na(num_features_, 0);
  for (int feature_group_index = 0; feature_group_index < num_groups_; ++feature_group_index) {
    if (feature_groups_[feature_group_index]->is_multi_val_) {
      for (int sub_feature_index = 0; sub_feature_index < feature_groups_[feature_group_index]->num_feature_; ++sub_feature_index) {
        uint8_t bit_type = 0;
        bool is_sparse = false;
        BinIterator* bin_iterator = nullptr;
        const void* one_column_data = GetColWiseData(feature_group_index,
                                                     sub_feature_index,
                                                     &bit_type,
                                                     &is_sparse,
                                                     &bin_iterator);
        column_data.emplace_back(one_column_data);
        column_bin_iterator.emplace_back(bin_iterator);
        column_bit_type.emplace_back(bit_type);
        feature_to_column[feature_index] = num_columns;
        ++num_columns;
        const BinMapper* feature_bin_mapper = FeatureBinMapper(feature_index);
        feature_max_bins[feature_index] = feature_max_bin(feature_index);
        feature_min_bins[feature_index] = feature_min_bin(feature_index);
        const uint32_t most_freq_bin = feature_bin_mapper->GetMostFreqBin();
        feature_offsets[feature_index] = static_cast<uint32_t>(most_freq_bin == 0);
        feature_most_freq_bins[feature_index] = most_freq_bin;
        feature_default_bin[feature_index] = feature_bin_mapper->GetDefaultBin();
        if (feature_bin_mapper->missing_type() == MissingType::Zero) {
          feature_missing_is_zero[feature_index] = 1;
          feature_missing_is_na[feature_index] = 0;
          if (feature_default_bin[feature_index] == feature_most_freq_bins[feature_index]) {
            feature_mfb_is_zero[feature_index] = 1;
          } else {
            feature_mfb_is_zero[feature_index] = 0;
          }
          feature_mfb_is_na[feature_index] = 0;
        } else if (feature_bin_mapper->missing_type() == MissingType::NaN) {
          feature_missing_is_zero[feature_index] = 0;
          feature_missing_is_na[feature_index] = 1;
          feature_mfb_is_zero[feature_index] = 0;
          if (feature_most_freq_bins[feature_index] + feature_min_bins[feature_index] == feature_max_bins[feature_index] &&
              feature_most_freq_bins[feature_index] > 0) {
            feature_mfb_is_na[feature_index] = 1;
          } else {
            feature_mfb_is_na[feature_index] = 0;
          }
        } else {
          feature_missing_is_zero[feature_index] = 0;
          feature_missing_is_na[feature_index] = 0;
          feature_mfb_is_zero[feature_index] = 0;
          feature_mfb_is_na[feature_index] = 0;
        }
        ++feature_index;
      }
    } else {
      uint8_t bit_type = 0;
      bool is_sparse = false;
      BinIterator* bin_iterator = nullptr;
      const void* one_column_data = GetColWiseData(feature_group_index,
                                                   -1,
                                                   &bit_type,
                                                   &is_sparse,
                                                   &bin_iterator);
      column_data.emplace_back(one_column_data);
      column_bin_iterator.emplace_back(bin_iterator);
      column_bit_type.emplace_back(bit_type);
      for (int sub_feature_index = 0; sub_feature_index < feature_groups_[feature_group_index]->num_feature_; ++sub_feature_index) {
        feature_to_column[feature_index] = num_columns;
        const BinMapper* feature_bin_mapper = FeatureBinMapper(feature_index);
        feature_max_bins[feature_index] = feature_max_bin(feature_index);
        feature_min_bins[feature_index] = feature_min_bin(feature_index);
        const uint32_t most_freq_bin = feature_bin_mapper->GetMostFreqBin();
        feature_offsets[feature_index] = static_cast<uint32_t>(most_freq_bin == 0);
        feature_most_freq_bins[feature_index] = most_freq_bin;
        feature_default_bin[feature_index] = feature_bin_mapper->GetDefaultBin();
        if (feature_bin_mapper->missing_type() == MissingType::Zero) {
          feature_missing_is_zero[feature_index] = 1;
          feature_missing_is_na[feature_index] = 0;
          if (feature_default_bin[feature_index] == feature_most_freq_bins[feature_index]) {
            feature_mfb_is_zero[feature_index] = 1;
          } else {
            feature_mfb_is_zero[feature_index] = 0;
          }
          feature_mfb_is_na[feature_index] = 0;
        } else if (feature_bin_mapper->missing_type() == MissingType::NaN) {
          feature_missing_is_zero[feature_index] = 0;
          feature_missing_is_na[feature_index] = 1;
          feature_mfb_is_zero[feature_index] = 0;
          if (feature_most_freq_bins[feature_index] + feature_min_bins[feature_index] == feature_max_bins[feature_index] &&
              feature_most_freq_bins[feature_index] > 0) {
            feature_mfb_is_na[feature_index] = 1;
          } else {
            feature_mfb_is_na[feature_index] = 0;
          }
        } else {
          feature_missing_is_zero[feature_index] = 0;
          feature_missing_is_na[feature_index] = 0;
          feature_mfb_is_zero[feature_index] = 0;
          feature_mfb_is_na[feature_index] = 0;
        }
        ++feature_index;
      }
      ++num_columns;
    }
  }
  cuda_column_data_->Init(num_columns,
                          column_data,
                          column_bin_iterator,
                          column_bit_type,
                          feature_max_bins,
                          feature_min_bins,
                          feature_offsets,
                          feature_most_freq_bins,
                          feature_default_bin,
                          feature_missing_is_zero,
                          feature_missing_is_na,
                          feature_mfb_is_zero,
                          feature_mfb_is_na,
                          feature_to_column);
}

1897
#endif  // USE_CUDA
1898

Guolin Ke's avatar
Guolin Ke committed
1899
}  // namespace LightGBM