"vscode:/vscode.git/clone" did not exist on "78579756a80619ae06e8850796ed95bc6043a92d"
dataset.cpp 29 KB
Newer Older
Guolin Ke's avatar
Guolin Ke committed
1
#include <LightGBM/dataset.h>
Guolin Ke's avatar
Guolin Ke committed
2
#include <LightGBM/feature_group.h>
3
#include <LightGBM/utils/openmp_wrapper.h>
Guolin Ke's avatar
Guolin Ke committed
4
5
#include <LightGBM/utils/threading.h>
#include <LightGBM/utils/array_args.h>
Guolin Ke's avatar
Guolin Ke committed
6

zhangyafeikimi's avatar
zhangyafeikimi committed
7
#include <chrono>
Guolin Ke's avatar
Guolin Ke committed
8
9
10
11
12
13
#include <cstdio>
#include <unordered_map>
#include <limits>
#include <vector>
#include <utility>
#include <string>
Guolin Ke's avatar
Guolin Ke committed
14
#include <sstream>
Guolin Ke's avatar
Guolin Ke committed
15
16
17

namespace LightGBM {

18
const char* Dataset::binary_file_token = "______LightGBM_Binary_File_Token______\n";
Guolin Ke's avatar
Guolin Ke committed
19

Guolin Ke's avatar
Guolin Ke committed
20
Dataset::Dataset() {
21
  data_filename_ = "noname";
Guolin Ke's avatar
Guolin Ke committed
22
  num_data_ = 0;
Guolin Ke's avatar
Guolin Ke committed
23
  is_finish_load_ = false;
Guolin Ke's avatar
Guolin Ke committed
24
25
}

26
Dataset::Dataset(data_size_t num_data) {
Guolin Ke's avatar
Guolin Ke committed
27
  data_filename_ = "noname";
Guolin Ke's avatar
Guolin Ke committed
28
  num_data_ = num_data;
Guolin Ke's avatar
Guolin Ke committed
29
  metadata_.Init(num_data_, NO_SPECIFIC, NO_SPECIFIC);
Guolin Ke's avatar
Guolin Ke committed
30
  is_finish_load_ = false;
Guolin Ke's avatar
Guolin Ke committed
31
32
}

Guolin Ke's avatar
Guolin Ke committed
33
Dataset::~Dataset() {
Guolin Ke's avatar
Guolin Ke committed
34
}
Guolin Ke's avatar
Guolin Ke committed
35

Guolin Ke's avatar
Guolin Ke committed
36
37
38
39
40
41
42
43
44
45
std::vector<std::vector<int>> NoGroup(
  const std::vector<int>& used_features) {
  std::vector<std::vector<int>> features_in_group;
  features_in_group.resize(used_features.size());
  for (size_t i = 0; i < used_features.size(); ++i) {
    features_in_group[i].emplace_back(used_features[i]);
  }
  return features_in_group;
}

Guolin Ke's avatar
Guolin Ke committed
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
int GetConfilctCount(const std::vector<bool>& mark, const int* indices, int num_indices, int max_cnt) {
  int ret = 0;
  for (int i = 0; i < num_indices; ++i) {
    if (mark[indices[i]]) {
      ++ret;
      if (ret > max_cnt) {
        return -1;
      }
    }
  }
  return ret;
}
void MarkUsed(std::vector<bool>& mark, const int* indices, int num_indices) {
  for (int i = 0; i < num_indices; ++i) {
    mark[indices[i]] = true;
  }
}

std::vector<std::vector<int>> FindGroups(const std::vector<std::unique_ptr<BinMapper>>& bin_mappers,
                                         const std::vector<int>& find_order,
                                         int** sample_indices,
                                         const int* num_per_col,
                                         size_t total_sample_cnt,
                                         data_size_t max_error_cnt,
                                         data_size_t filter_cnt,
Guolin Ke's avatar
Guolin Ke committed
71
72
                                         data_size_t num_data,
                                         bool is_use_gpu) {
Guolin Ke's avatar
Guolin Ke committed
73
  const int max_search_group = 100;
Guolin Ke's avatar
Guolin Ke committed
74
  const int gpu_max_bin_per_group = 256;
Guolin Ke's avatar
Guolin Ke committed
75
76
77
78
79
80
81
82
83
84
85
86
  Random rand(num_data);
  std::vector<std::vector<int>> features_in_group;
  std::vector<std::vector<bool>> conflict_marks;
  std::vector<int> group_conflict_cnt;
  std::vector<size_t> group_non_zero_cnt;
  std::vector<int> group_num_bin;

  for (auto fidx : find_order) {
    const size_t cur_non_zero_cnt = num_per_col[fidx];
    bool need_new_group = true;
    std::vector<int> available_groups;
    for (int gid = 0; gid < static_cast<int>(features_in_group.size()); ++gid) {
Guolin Ke's avatar
Guolin Ke committed
87
88
89
90
91
      if (group_non_zero_cnt[gid] + cur_non_zero_cnt <= total_sample_cnt + max_error_cnt){
        if (!is_use_gpu || group_num_bin[gid] + bin_mappers[fidx]->num_bin() + (bin_mappers[fidx]->GetDefaultBin() == 0 ? -1 : 0)
            <= gpu_max_bin_per_group) {
          available_groups.push_back(gid);
        }
Guolin Ke's avatar
Guolin Ke committed
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
      }
    }
    std::vector<int> search_groups;
    if (!available_groups.empty()) {
      int last = static_cast<int>(available_groups.size()) - 1;
      auto indices = rand.Sample(last, std::min(last, max_search_group - 1));
      search_groups.push_back(available_groups.back());
      for (auto idx : indices) {
        search_groups.push_back(available_groups[idx]);
      }
    }
    for (auto gid : search_groups) {
      const int rest_max_cnt = max_error_cnt - group_conflict_cnt[gid];
      int cnt = GetConfilctCount(conflict_marks[gid], sample_indices[fidx], num_per_col[fidx], rest_max_cnt);
      if (cnt >= 0 && cnt <= rest_max_cnt) {
        data_size_t rest_non_zero_data = static_cast<data_size_t>(
          static_cast<double>(cur_non_zero_cnt - cnt) * num_data / total_sample_cnt);
        if (rest_non_zero_data < filter_cnt) { continue; }
        need_new_group = false;
        features_in_group[gid].push_back(fidx);
        group_conflict_cnt[gid] += cnt;
        group_non_zero_cnt[gid] += cur_non_zero_cnt - cnt;
        MarkUsed(conflict_marks[gid], sample_indices[fidx], num_per_col[fidx]);
Guolin Ke's avatar
Guolin Ke committed
115
116
117
        if (is_use_gpu) {
          group_num_bin[gid] += bin_mappers[fidx]->num_bin() + (bin_mappers[fidx]->GetDefaultBin() == 0 ? -1 : 0);
        }
Guolin Ke's avatar
Guolin Ke committed
118
119
120
121
122
123
124
125
126
127
        break;
      }
    }
    if (need_new_group) {
      features_in_group.emplace_back();
      features_in_group.back().push_back(fidx);
      group_conflict_cnt.push_back(0);
      conflict_marks.emplace_back(total_sample_cnt, false);
      MarkUsed(conflict_marks.back(), sample_indices[fidx], num_per_col[fidx]);
      group_non_zero_cnt.emplace_back(cur_non_zero_cnt);
Guolin Ke's avatar
Guolin Ke committed
128
129
130
      if (is_use_gpu) {
        group_num_bin.push_back(1 + bin_mappers[fidx]->num_bin() + (bin_mappers[fidx]->GetDefaultBin() == 0 ? -1 : 0));
      }
Guolin Ke's avatar
Guolin Ke committed
131
132
133
134
135
136
137
138
139
140
141
142
143
144
    }
  }
  return features_in_group;
}

std::vector<std::vector<int>> FastFeatureBundling(std::vector<std::unique_ptr<BinMapper>>& bin_mappers,
                                                  int** sample_indices,
                                                  const int* num_per_col,
                                                  size_t total_sample_cnt,
                                                  const std::vector<int>& used_features,
                                                  double max_conflict_rate,
                                                  data_size_t num_data,
                                                  data_size_t min_data,
                                                  double sparse_threshold,
Guolin Ke's avatar
Guolin Ke committed
145
146
                                                  bool is_enable_sparse,
                                                  bool is_use_gpu) {
Guolin Ke's avatar
Guolin Ke committed
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
  // filter is based on sampling data, so decrease its range
  const data_size_t filter_cnt = static_cast<data_size_t>(static_cast<double>(0.95 * min_data) / num_data * total_sample_cnt);
  const data_size_t max_error_cnt = static_cast<data_size_t>(total_sample_cnt * max_conflict_rate);
  int cur_used_feature_cnt = 0;
  std::vector<size_t> feature_non_zero_cnt;
  // put dense feature first
  for (auto fidx : used_features) {
    feature_non_zero_cnt.emplace_back(num_per_col[fidx]);
    ++cur_used_feature_cnt;
  }
  // sort by non zero cnt
  std::vector<int> sorted_idx;
  for (int i = 0; i < cur_used_feature_cnt; ++i) {
    sorted_idx.emplace_back(i);
  }
  // sort by non zero cnt, bigger first
  std::sort(sorted_idx.begin(), sorted_idx.end(),
            [&feature_non_zero_cnt](int a, int b) {
    return feature_non_zero_cnt[a] > feature_non_zero_cnt[b];
  });

  std::vector<int> feature_order_by_cnt;
  for (auto sidx : sorted_idx) {
    feature_order_by_cnt.push_back(used_features[sidx]);
  }
Guolin Ke's avatar
Guolin Ke committed
172
173
  auto features_in_group = FindGroups(bin_mappers, used_features, sample_indices, num_per_col, total_sample_cnt, max_error_cnt, filter_cnt, num_data, is_use_gpu);
  auto group2 = FindGroups(bin_mappers, feature_order_by_cnt, sample_indices, num_per_col, total_sample_cnt, max_error_cnt, filter_cnt, num_data, is_use_gpu);
Guolin Ke's avatar
Guolin Ke committed
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
  if (features_in_group.size() > group2.size()) {
    features_in_group = group2;
  }
  std::vector<std::vector<int>> ret;
  for (size_t i = 0; i < features_in_group.size(); ++i) {
    if (features_in_group[i].size() <= 1 || features_in_group[i].size() >= 5) {
      ret.push_back(features_in_group[i]);
    } else {
      int cnt_non_zero = 0;
      for (size_t j = 0; j < features_in_group[i].size(); ++j) {
        const int fidx = features_in_group[i][j];
        cnt_non_zero += static_cast<int>(num_data * (1.0f - bin_mappers[fidx]->sparse_rate()));
      }
      double sparse_rate = 1.0f - static_cast<double>(cnt_non_zero) / (num_data);
      // take apart small sparse group, due it will not gain on speed 
      if (sparse_rate >= sparse_threshold && is_enable_sparse) {
        for (size_t j = 0; j < features_in_group[i].size(); ++j) {
          const int fidx = features_in_group[i][j];
          ret.emplace_back();
          ret.back().push_back(fidx);
        }
      } else {
        ret.push_back(features_in_group[i]);
      }
    }
  }
  // shuffle groups
  int num_group = static_cast<int>(ret.size());
  Random tmp_rand(12);
  for (int i = 0; i < num_group - 1; ++i) {
    int j = tmp_rand.NextShort(i + 1, num_group);
    std::swap(ret[i], ret[j]);
  }
  return ret;
}

Guolin Ke's avatar
Guolin Ke committed
210
211
void Dataset::Construct(
  std::vector<std::unique_ptr<BinMapper>>& bin_mappers,
Guolin Ke's avatar
Guolin Ke committed
212
213
214
  int** sample_non_zero_indices,
  const int* num_per_col,
  size_t total_sample_cnt,
Guolin Ke's avatar
Guolin Ke committed
215
  const IOConfig& io_config) {
Guolin Ke's avatar
Guolin Ke committed
216

Guolin Ke's avatar
Guolin Ke committed
217
  num_total_features_ = static_cast<int>(bin_mappers.size());
218
  sparse_threshold_ = io_config.sparse_threshold;
Guolin Ke's avatar
Guolin Ke committed
219
220
221
222
223
  // get num_features
  std::vector<int> used_features;
  for (int i = 0; i < static_cast<int>(bin_mappers.size()); ++i) {
    if (bin_mappers[i] != nullptr && !bin_mappers[i]->is_trival()) {
      used_features.emplace_back(i);
Guolin Ke's avatar
Guolin Ke committed
224
    }
Guolin Ke's avatar
Guolin Ke committed
225
226
227
228
  }

  auto features_in_group = NoGroup(used_features);

Guolin Ke's avatar
Guolin Ke committed
229
230
231
232
233
  if (io_config.enable_bundle) {
    features_in_group = FastFeatureBundling(bin_mappers,
                                            sample_non_zero_indices, num_per_col, total_sample_cnt,
                                            used_features, io_config.max_conflict_rate,
                                            num_data_, io_config.min_data_in_leaf,
Guolin Ke's avatar
Guolin Ke committed
234
                                            sparse_threshold_, io_config.is_enable_sparse, io_config.device_type == std::string("gpu"));
Guolin Ke's avatar
Guolin Ke committed
235
236
  }

Guolin Ke's avatar
Guolin Ke committed
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
  num_features_ = 0;
  for (const auto& fs : features_in_group) {
    num_features_ += static_cast<int>(fs.size());
  }
  int cur_fidx = 0;
  used_feature_map_ = std::vector<int>(num_total_features_, -1);
  num_groups_ = static_cast<int>(features_in_group.size());
  real_feature_idx_.resize(num_features_);
  feature2group_.resize(num_features_);
  feature2subfeature_.resize(num_features_);
  for (int i = 0; i < num_groups_; ++i) {
    auto cur_features = features_in_group[i];
    int cur_cnt_features = static_cast<int>(cur_features.size());
    // get bin_mappers
    std::vector<std::unique_ptr<BinMapper>> cur_bin_mappers;
    for (int j = 0; j < cur_cnt_features; ++j) {
      int real_fidx = cur_features[j];
      used_feature_map_[real_fidx] = cur_fidx;
      real_feature_idx_[cur_fidx] = real_fidx;
      feature2group_[cur_fidx] = i;
      feature2subfeature_[cur_fidx] = j;
      cur_bin_mappers.emplace_back(bin_mappers[real_fidx].release());
      ++cur_fidx;
    }
    feature_groups_.emplace_back(std::unique_ptr<FeatureGroup>(
Guolin Ke's avatar
Guolin Ke committed
262
263
      new FeatureGroup(cur_cnt_features, cur_bin_mappers, num_data_, sparse_threshold_,
                       io_config.is_enable_sparse)));
Guolin Ke's avatar
Guolin Ke committed
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
  }
  feature_groups_.shrink_to_fit();
  group_bin_boundaries_.clear();
  uint64_t num_total_bin = 0;
  group_bin_boundaries_.push_back(num_total_bin);
  for (int i = 0; i < num_groups_; ++i) {
    num_total_bin += feature_groups_[i]->num_total_bin_;
    group_bin_boundaries_.push_back(num_total_bin);
  }
  int last_group = 0;
  group_feature_start_.reserve(num_groups_);
  group_feature_cnt_.reserve(num_groups_);
  group_feature_start_.push_back(0);
  group_feature_cnt_.push_back(1);
  for (int i = 1; i < num_features_; ++i) {
    const int group = feature2group_[i];
    if (group == last_group) {
      group_feature_cnt_.back() = group_feature_cnt_.back() + 1;
    } else {
      group_feature_start_.push_back(i);
      group_feature_cnt_.push_back(1);
      last_group = group;
    }
  }
Guolin Ke's avatar
Guolin Ke committed
288
289
}

Guolin Ke's avatar
Guolin Ke committed
290
void Dataset::FinishLoad() {
Guolin Ke's avatar
Guolin Ke committed
291
  if (is_finish_load_) { return; }
292
  OMP_INIT_EX();
Guolin Ke's avatar
Guolin Ke committed
293
  #pragma omp parallel for schedule(guided)
Guolin Ke's avatar
Guolin Ke committed
294
  for (int i = 0; i < num_groups_; ++i) {
295
    OMP_LOOP_EX_BEGIN();
Guolin Ke's avatar
Guolin Ke committed
296
    feature_groups_[i]->bin_data_->FinishLoad();
297
    OMP_LOOP_EX_END();
Guolin Ke's avatar
Guolin Ke committed
298
  }
299
  OMP_THROW_EX();
Guolin Ke's avatar
Guolin Ke committed
300
  is_finish_load_ = true;
Guolin Ke's avatar
Guolin Ke committed
301
}
Guolin Ke's avatar
Guolin Ke committed
302

303
void Dataset::CopyFeatureMapperFrom(const Dataset* dataset) {
Guolin Ke's avatar
Guolin Ke committed
304
  feature_groups_.clear();
Guolin Ke's avatar
Guolin Ke committed
305
  num_features_ = dataset->num_features_;
Guolin Ke's avatar
Guolin Ke committed
306
  num_groups_ = dataset->num_groups_;
307
  sparse_threshold_ = dataset->sparse_threshold_;
Guolin Ke's avatar
Guolin Ke committed
308
  // copy feature bin mapper data
Guolin Ke's avatar
Guolin Ke committed
309
310
311
312
313
314
315
316
  for (int i = 0; i < num_groups_; ++i) {
    std::vector<std::unique_ptr<BinMapper>> bin_mappers;
    for (int j = 0; j < dataset->feature_groups_[i]->num_feature_; ++j) {
      bin_mappers.emplace_back(new BinMapper(*(dataset->feature_groups_[i]->bin_mappers_[j])));
    }
    feature_groups_.emplace_back(new FeatureGroup(
      dataset->feature_groups_[i]->num_feature_,
      bin_mappers,
Guolin Ke's avatar
Guolin Ke committed
317
      num_data_,
Guolin Ke's avatar
Guolin Ke committed
318
      dataset->feature_groups_[i]->is_sparse_));
Guolin Ke's avatar
Guolin Ke committed
319
  }
Guolin Ke's avatar
Guolin Ke committed
320
  feature_groups_.shrink_to_fit();
Guolin Ke's avatar
Guolin Ke committed
321
322
323
  used_feature_map_ = dataset->used_feature_map_;
  num_total_features_ = dataset->num_total_features_;
  feature_names_ = dataset->feature_names_;
Guolin Ke's avatar
Guolin Ke committed
324
  label_idx_ = dataset->label_idx_;
Guolin Ke's avatar
Guolin Ke committed
325
326
327
328
329
330
331
332
333
334
335
336
  real_feature_idx_ = dataset->real_feature_idx_;
  feature2group_ = dataset->feature2group_;
  feature2subfeature_ = dataset->feature2subfeature_;
  group_bin_boundaries_ = dataset->group_bin_boundaries_;
  group_feature_start_ = dataset->group_feature_start_;
  group_feature_cnt_ = dataset->group_feature_cnt_;
}

void Dataset::CreateValid(const Dataset* dataset) {
  feature_groups_.clear();
  num_features_ = dataset->num_features_;
  num_groups_ = num_features_;
337
  sparse_threshold_ = dataset->sparse_threshold_;
Guolin Ke's avatar
Guolin Ke committed
338
339
340
341
342
343
344
345
346
347
348
  bool is_enable_sparse = true;
  feature2group_.clear();
  feature2subfeature_.clear();
  // copy feature bin mapper data
  for (int i = 0; i < num_features_; ++i) {
    std::vector<std::unique_ptr<BinMapper>> bin_mappers;
    bin_mappers.emplace_back(new BinMapper(*(dataset->FeatureBinMapper(i))));
    feature_groups_.emplace_back(new FeatureGroup(
      1,
      bin_mappers,
      num_data_,
349
      dataset->sparse_threshold_,
Guolin Ke's avatar
Guolin Ke committed
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
      is_enable_sparse));
    feature2group_.push_back(i);
    feature2subfeature_.push_back(0);
  }

  feature_groups_.shrink_to_fit();
  used_feature_map_ = dataset->used_feature_map_;
  num_total_features_ = dataset->num_total_features_;
  feature_names_ = dataset->feature_names_;
  label_idx_ = dataset->label_idx_;
  real_feature_idx_ = dataset->real_feature_idx_;
  group_bin_boundaries_.clear();
  uint64_t num_total_bin = 0;
  group_bin_boundaries_.push_back(num_total_bin);
  for (int i = 0; i < num_groups_; ++i) {
    num_total_bin += feature_groups_[i]->num_total_bin_;
    group_bin_boundaries_.push_back(num_total_bin);
  }
  int last_group = 0;
  group_feature_start_.reserve(num_groups_);
  group_feature_cnt_.reserve(num_groups_);
  group_feature_start_.push_back(0);
  group_feature_cnt_.push_back(1);
  for (int i = 1; i < num_features_; ++i) {
    const int group = feature2group_[i];
    if (group == last_group) {
      group_feature_cnt_.back() = group_feature_cnt_.back() + 1;
    } else {
      group_feature_start_.push_back(i);
      group_feature_cnt_.push_back(1);
      last_group = group;
    }
  }
Guolin Ke's avatar
Guolin Ke committed
383
384
}

Guolin Ke's avatar
Guolin Ke committed
385
386
387
void Dataset::ReSize(data_size_t num_data) {
  if (num_data_ != num_data) {
    num_data_ = num_data;
388
    OMP_INIT_EX();
Guolin Ke's avatar
Guolin Ke committed
389
    #pragma omp parallel for schedule(static)
Guolin Ke's avatar
Guolin Ke committed
390
    for (int group = 0; group < num_groups_; ++group) {
391
      OMP_LOOP_EX_BEGIN();
Guolin Ke's avatar
Guolin Ke committed
392
      feature_groups_[group]->bin_data_->ReSize(num_data_);
393
      OMP_LOOP_EX_END();
Guolin Ke's avatar
Guolin Ke committed
394
    }
395
    OMP_THROW_EX();
Guolin Ke's avatar
Guolin Ke committed
396
397
398
399
400
  }
}

void Dataset::CopySubset(const Dataset* fullset, const data_size_t* used_indices, data_size_t num_used_indices, bool need_meta_data) {
  CHECK(num_used_indices == num_data_);
401
  OMP_INIT_EX();
Guolin Ke's avatar
Guolin Ke committed
402
  #pragma omp parallel for schedule(static)
Guolin Ke's avatar
Guolin Ke committed
403
  for (int group = 0; group < num_groups_; ++group) {
404
    OMP_LOOP_EX_BEGIN();
Guolin Ke's avatar
Guolin Ke committed
405
    feature_groups_[group]->CopySubset(fullset->feature_groups_[group].get(), used_indices, num_used_indices);
406
    OMP_LOOP_EX_END();
Guolin Ke's avatar
Guolin Ke committed
407
  }
408
  OMP_THROW_EX();
Guolin Ke's avatar
Guolin Ke committed
409
  if (need_meta_data) {
Guolin Ke's avatar
Guolin Ke committed
410
    metadata_.Init(fullset->metadata_, used_indices, num_used_indices);
Guolin Ke's avatar
Guolin Ke committed
411
  }
Guolin Ke's avatar
Guolin Ke committed
412
  is_finish_load_ = true;
Guolin Ke's avatar
Guolin Ke committed
413
414
}

415
bool Dataset::SetFloatField(const char* field_name, const float* field_data, data_size_t num_element) {
Guolin Ke's avatar
Guolin Ke committed
416
417
418
  std::string name(field_name);
  name = Common::Trim(name);
  if (name == std::string("label") || name == std::string("target")) {
419
    metadata_.SetLabel(field_data, num_element);
Guolin Ke's avatar
Guolin Ke committed
420
  } else if (name == std::string("weight") || name == std::string("weights")) {
421
    metadata_.SetWeights(field_data, num_element);
Guolin Ke's avatar
Guolin Ke committed
422
423
424
425
426
427
428
429
430
431
  } else {
    return false;
  }
  return true;
}

bool Dataset::SetDoubleField(const char* field_name, const double* field_data, data_size_t num_element) {
  std::string name(field_name);
  name = Common::Trim(name);
  if (name == std::string("init_score")) {
432
    metadata_.SetInitScore(field_data, num_element);
Guolin Ke's avatar
Guolin Ke committed
433
  } else {
434
    return false;
Guolin Ke's avatar
Guolin Ke committed
435
  }
436
  return true;
Guolin Ke's avatar
Guolin Ke committed
437
438
}

439
440
441
442
bool Dataset::SetIntField(const char* field_name, const int* field_data, data_size_t num_element) {
  std::string name(field_name);
  name = Common::Trim(name);
  if (name == std::string("query") || name == std::string("group")) {
Guolin Ke's avatar
Guolin Ke committed
443
    metadata_.SetQuery(field_data, num_element);
444
445
446
447
448
449
  } else {
    return false;
  }
  return true;
}

Guolin Ke's avatar
Guolin Ke committed
450
bool Dataset::GetFloatField(const char* field_name, data_size_t* out_len, const float** out_ptr) {
451
452
453
454
455
456
457
458
  std::string name(field_name);
  name = Common::Trim(name);
  if (name == std::string("label") || name == std::string("target")) {
    *out_ptr = metadata_.label();
    *out_len = num_data_;
  } else if (name == std::string("weight") || name == std::string("weights")) {
    *out_ptr = metadata_.weights();
    *out_len = num_data_;
Guolin Ke's avatar
Guolin Ke committed
459
460
461
462
463
464
465
466
467
468
  } else {
    return false;
  }
  return true;
}

bool Dataset::GetDoubleField(const char* field_name, data_size_t* out_len, const double** out_ptr) {
  std::string name(field_name);
  name = Common::Trim(name);
  if (name == std::string("init_score")) {
469
    *out_ptr = metadata_.init_score();
Guolin Ke's avatar
Guolin Ke committed
470
    *out_len = static_cast<data_size_t>(metadata_.num_init_score());
471
472
473
  } else {
    return false;
  }
474
  return true;
475
476
}

Guolin Ke's avatar
Guolin Ke committed
477
bool Dataset::GetIntField(const char* field_name, data_size_t* out_len, const int** out_ptr) {
478
479
480
  std::string name(field_name);
  name = Common::Trim(name);
  if (name == std::string("query") || name == std::string("group")) {
481
    *out_ptr = metadata_.query_boundaries();
Guolin Ke's avatar
Guolin Ke committed
482
    *out_len = metadata_.num_queries() + 1;
Guolin Ke's avatar
Guolin Ke committed
483
484
485
  } else {
    return false;
  }
486
  return true;
487
488
}

Guolin Ke's avatar
Guolin Ke committed
489
void Dataset::SaveBinaryFile(const char* bin_filename) {
Guolin Ke's avatar
Guolin Ke committed
490
  if (bin_filename != nullptr
Guolin Ke's avatar
Guolin Ke committed
491
      && std::string(bin_filename) == std::string(data_filename_)) {
Guolin Ke's avatar
Guolin Ke committed
492
493
494
    Log::Warning("Bianry file %s already existed", bin_filename);
    return;
  }
Guolin Ke's avatar
Guolin Ke committed
495
  // if not pass a filename, just append ".bin" of original file
Guolin Ke's avatar
Guolin Ke committed
496
  std::string bin_filename_str(data_filename_);
Guolin Ke's avatar
Guolin Ke committed
497
498
499
500
  if (bin_filename == nullptr || bin_filename[0] == '\0') {
    bin_filename_str.append(".bin");
    bin_filename = bin_filename_str.c_str();
  }
Guolin Ke's avatar
Guolin Ke committed
501
502
  bool is_file_existed = false;
  FILE* file;
Guolin Ke's avatar
Guolin Ke committed
503
  #ifdef _MSC_VER
Guolin Ke's avatar
Guolin Ke committed
504
  fopen_s(&file, bin_filename, "rb");
Guolin Ke's avatar
Guolin Ke committed
505
  #else
Guolin Ke's avatar
Guolin Ke committed
506
  file = fopen(bin_filename, "rb");
Guolin Ke's avatar
Guolin Ke committed
507
  #endif
Guolin Ke's avatar
Guolin Ke committed
508
509
510
511
512
513

  if (file != NULL) {
    is_file_existed = true;
    Log::Warning("File %s existed, cannot save binary to it", bin_filename);
    fclose(file);
  }
Guolin Ke's avatar
Guolin Ke committed
514

Guolin Ke's avatar
Guolin Ke committed
515
  if (!is_file_existed) {
Guolin Ke's avatar
Guolin Ke committed
516
    #ifdef _MSC_VER
Guolin Ke's avatar
Guolin Ke committed
517
    fopen_s(&file, bin_filename, "wb");
Guolin Ke's avatar
Guolin Ke committed
518
    #else
Guolin Ke's avatar
Guolin Ke committed
519
    file = fopen(bin_filename, "wb");
Guolin Ke's avatar
Guolin Ke committed
520
    #endif
Guolin Ke's avatar
Guolin Ke committed
521
    if (file == NULL) {
Guolin Ke's avatar
Guolin Ke committed
522
      Log::Fatal("Cannot write binary data to %s ", bin_filename);
Guolin Ke's avatar
Guolin Ke committed
523
    }
524
    Log::Info("Saving data to binary file %s", bin_filename);
525
526
    size_t size_of_token = std::strlen(binary_file_token);
    fwrite(binary_file_token, sizeof(char), size_of_token, file);
Guolin Ke's avatar
Guolin Ke committed
527
    // get size of header
Guolin Ke's avatar
Guolin Ke committed
528
    size_t size_of_header = sizeof(num_data_) + sizeof(num_features_) + sizeof(num_total_features_)
Guolin Ke's avatar
Guolin Ke committed
529
      + sizeof(int) * num_total_features_ + sizeof(label_idx_) + sizeof(num_groups_)
Guolin Ke's avatar
Guolin Ke committed
530
      + 3 * sizeof(int) * num_features_ + sizeof(uint64_t) * (num_groups_ + 1) + 2 * sizeof(int) * num_groups_;
531
532
533
534
    // size of feature names
    for (int i = 0; i < num_total_features_; ++i) {
      size_of_header += feature_names_[i].size() + sizeof(int);
    }
Guolin Ke's avatar
Guolin Ke committed
535
536
537
538
    fwrite(&size_of_header, sizeof(size_of_header), 1, file);
    // write header
    fwrite(&num_data_, sizeof(num_data_), 1, file);
    fwrite(&num_features_, sizeof(num_features_), 1, file);
Guolin Ke's avatar
Guolin Ke committed
539
    fwrite(&num_total_features_, sizeof(num_total_features_), 1, file);
Guolin Ke's avatar
Guolin Ke committed
540
    fwrite(&label_idx_, sizeof(label_idx_), 1, file);
Guolin Ke's avatar
Guolin Ke committed
541
542
543
544
545
546
547
548
    fwrite(used_feature_map_.data(), sizeof(int), num_total_features_, file);
    fwrite(&num_groups_, sizeof(num_groups_), 1, file);
    fwrite(real_feature_idx_.data(), sizeof(int), num_features_, file);
    fwrite(feature2group_.data(), sizeof(int), num_features_, file);
    fwrite(feature2subfeature_.data(), sizeof(int), num_features_, file);
    fwrite(group_bin_boundaries_.data(), sizeof(uint64_t), num_groups_ + 1, file);
    fwrite(group_feature_start_.data(), sizeof(int), num_groups_, file);
    fwrite(group_feature_cnt_.data(), sizeof(int), num_groups_, file);
Guolin Ke's avatar
Guolin Ke committed
549

550
551
552
553
554
555
556
557
    // write feature names
    for (int i = 0; i < num_total_features_; ++i) {
      int str_len = static_cast<int>(feature_names_[i].size());
      fwrite(&str_len, sizeof(int), 1, file);
      const char* c_str = feature_names_[i].c_str();
      fwrite(c_str, sizeof(char), str_len, file);
    }

Guolin Ke's avatar
Guolin Ke committed
558
559
560
561
562
563
564
    // get size of meta data
    size_t size_of_metadata = metadata_.SizesInByte();
    fwrite(&size_of_metadata, sizeof(size_of_metadata), 1, file);
    // write meta data
    metadata_.SaveBinaryToFile(file);

    // write feature data
Guolin Ke's avatar
Guolin Ke committed
565
    for (int i = 0; i < num_groups_; ++i) {
Guolin Ke's avatar
Guolin Ke committed
566
      // get size of feature
Guolin Ke's avatar
Guolin Ke committed
567
      size_t size_of_feature = feature_groups_[i]->SizesInByte();
Guolin Ke's avatar
Guolin Ke committed
568
569
      fwrite(&size_of_feature, sizeof(size_of_feature), 1, file);
      // write feature
Guolin Ke's avatar
Guolin Ke committed
570
      feature_groups_[i]->SaveBinaryToFile(file);
Guolin Ke's avatar
Guolin Ke committed
571
572
573
574
575
    }
    fclose(file);
  }
}

576
577
578
579
void Dataset::ConstructHistograms(const std::vector<int8_t>& is_feature_used,
                                  const data_size_t* data_indices, data_size_t num_data,
                                  int leaf_idx,
                                  std::vector<std::unique_ptr<OrderedBin>>& ordered_bins,
580
581
                                  const score_t* gradients, const score_t* hessians,
                                  score_t* ordered_gradients, score_t* ordered_hessians,
582
583
                                  bool is_constant_hessian,
                                  HistogramBinEntry* hist_data) const {
Guolin Ke's avatar
Guolin Ke committed
584
585
586
587
588
589
590

  if (leaf_idx < 0 || num_data <= 0 || hist_data == nullptr) {
    return;
  }
  auto ptr_ordered_grad = gradients;
  auto ptr_ordered_hess = hessians;
  if (data_indices != nullptr && num_data < num_data_) {
591
592
593
594
595
596
597
598
599
600
601
    if (!is_constant_hessian) {
      #pragma omp parallel for schedule(static)
      for (data_size_t i = 0; i < num_data; ++i) {
        ordered_gradients[i] = gradients[data_indices[i]];
        ordered_hessians[i] = hessians[data_indices[i]];
      }
    } else {
      #pragma omp parallel for schedule(static)
      for (data_size_t i = 0; i < num_data; ++i) {
        ordered_gradients[i] = gradients[data_indices[i]];
      }
Guolin Ke's avatar
Guolin Ke committed
602
603
604
    }
    ptr_ordered_grad = ordered_gradients;
    ptr_ordered_hess = ordered_hessians;
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
    if (!is_constant_hessian) {
      OMP_INIT_EX();
      #pragma omp parallel for schedule(static)
      for (int group = 0; group < num_groups_; ++group) {
        OMP_LOOP_EX_BEGIN();
        bool is_groud_used = false;
        const int f_cnt = group_feature_cnt_[group];
        for (int j = 0; j < f_cnt; ++j) {
          const int fidx = group_feature_start_[group] + j;
          if (is_feature_used[fidx]) {
            is_groud_used = true;
            break;
          }
        }
        if (!is_groud_used) { continue; }
        // feature is not used
        auto data_ptr = hist_data + group_bin_boundaries_[group];
        const int num_bin = feature_groups_[group]->num_total_bin_;
        std::memset(data_ptr + 1, 0, (num_bin - 1) * sizeof(HistogramBinEntry));
        // construct histograms for smaller leaf
        if (ordered_bins[group] == nullptr) {
          // if not use ordered bin
          feature_groups_[group]->bin_data_->ConstructHistogram(
            data_indices,
            num_data,
            ptr_ordered_grad,
            ptr_ordered_hess,
            data_ptr);
        } else {
          // used ordered bin
          ordered_bins[group]->ConstructHistogram(leaf_idx,
                                                  gradients,
                                                  hessians,
                                                  data_ptr);
639
        }
640
        OMP_LOOP_EX_END();
641
      }
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
      OMP_THROW_EX();
    } else {
      OMP_INIT_EX();
      #pragma omp parallel for schedule(static)
      for (int group = 0; group < num_groups_; ++group) {
        OMP_LOOP_EX_BEGIN();
        bool is_groud_used = false;
        const int f_cnt = group_feature_cnt_[group];
        for (int j = 0; j < f_cnt; ++j) {
          const int fidx = group_feature_start_[group] + j;
          if (is_feature_used[fidx]) {
            is_groud_used = true;
            break;
          }
        }
        if (!is_groud_used) { continue; }
        // feature is not used
        auto data_ptr = hist_data + group_bin_boundaries_[group];
        const int num_bin = feature_groups_[group]->num_total_bin_;
        std::memset(data_ptr + 1, 0, (num_bin - 1) * sizeof(HistogramBinEntry));
        // construct histograms for smaller leaf
        if (ordered_bins[group] == nullptr) {
          // if not use ordered bin
          feature_groups_[group]->bin_data_->ConstructHistogram(
            data_indices,
            num_data,
            ptr_ordered_grad,
            data_ptr);
        } else {
          // used ordered bin
          ordered_bins[group]->ConstructHistogram(leaf_idx,
                                                  gradients,
                                                  data_ptr);
        }
        // fixed hessian.
        for (int i = 0; i < num_bin; ++i) {
          data_ptr[i].sum_hessians = data_ptr[i].cnt * hessians[0];
        }
        OMP_LOOP_EX_END();
Guolin Ke's avatar
Guolin Ke committed
681
      }
682
      OMP_THROW_EX();
Guolin Ke's avatar
Guolin Ke committed
683
    }
684
  } else {
685
686
687
688
689
690
691
692
693
694
695
696
697
    if (!is_constant_hessian) {
      OMP_INIT_EX();
      #pragma omp parallel for schedule(static)
      for (int group = 0; group < num_groups_; ++group) {
        OMP_LOOP_EX_BEGIN();
        bool is_groud_used = false;
        const int f_cnt = group_feature_cnt_[group];
        for (int j = 0; j < f_cnt; ++j) {
          const int fidx = group_feature_start_[group] + j;
          if (is_feature_used[fidx]) {
            is_groud_used = true;
            break;
          }
Guolin Ke's avatar
Guolin Ke committed
698
        }
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
        if (!is_groud_used) { continue; }
        // feature is not used
        auto data_ptr = hist_data + group_bin_boundaries_[group];
        const int num_bin = feature_groups_[group]->num_total_bin_;
        std::memset(data_ptr + 1, 0, (num_bin - 1) * sizeof(HistogramBinEntry));
        // construct histograms for smaller leaf
        if (ordered_bins[group] == nullptr) {
          // if not use ordered bin
          feature_groups_[group]->bin_data_->ConstructHistogram(
            num_data,
            ptr_ordered_grad,
            ptr_ordered_hess,
            data_ptr);
        } else {
          // used ordered bin
          ordered_bins[group]->ConstructHistogram(leaf_idx,
                                                  gradients,
                                                  hessians,
                                                  data_ptr);
        }
        OMP_LOOP_EX_END();
720
      }
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
      OMP_THROW_EX();
    } else {
      OMP_INIT_EX();
      #pragma omp parallel for schedule(static)
      for (int group = 0; group < num_groups_; ++group) {
        OMP_LOOP_EX_BEGIN();
        bool is_groud_used = false;
        const int f_cnt = group_feature_cnt_[group];
        for (int j = 0; j < f_cnt; ++j) {
          const int fidx = group_feature_start_[group] + j;
          if (is_feature_used[fidx]) {
            is_groud_used = true;
            break;
          }
        }
        if (!is_groud_used) { continue; }
        // feature is not used
        auto data_ptr = hist_data + group_bin_boundaries_[group];
        const int num_bin = feature_groups_[group]->num_total_bin_;
        std::memset(data_ptr + 1, 0, (num_bin - 1) * sizeof(HistogramBinEntry));
        // construct histograms for smaller leaf
        if (ordered_bins[group] == nullptr) {
          // if not use ordered bin
          feature_groups_[group]->bin_data_->ConstructHistogram(
            num_data,
            ptr_ordered_grad,
            data_ptr);
        } else {
          // used ordered bin
          ordered_bins[group]->ConstructHistogram(leaf_idx,
                                                  gradients,
                                                  data_ptr);
        }
        // fixed hessian.
        for (int i = 0; i < num_bin; ++i) {
          data_ptr[i].sum_hessians = data_ptr[i].cnt * hessians[0];
        }
        OMP_LOOP_EX_END();
759
      }
760
      OMP_THROW_EX();
Guolin Ke's avatar
Guolin Ke committed
761
762
763
764
765
    }
  }
}

void Dataset::FixHistogram(int feature_idx, double sum_gradient, double sum_hessian, data_size_t num_data,
766
                           HistogramBinEntry* data) const {
Guolin Ke's avatar
Guolin Ke committed
767
768
769
770
771
772
  const int group = feature2group_[feature_idx];
  const int sub_feature = feature2subfeature_[feature_idx];
  const BinMapper* bin_mapper = feature_groups_[group]->bin_mappers_[sub_feature].get();
  const int default_bin = bin_mapper->GetDefaultBin();
  if (default_bin > 0) {
    const int num_bin = bin_mapper->num_bin();
773
774
775
    data[default_bin].sum_gradients = sum_gradient;
    data[default_bin].sum_hessians = sum_hessian;
    data[default_bin].cnt = num_data;
Guolin Ke's avatar
Guolin Ke committed
776
777
    for (int i = 0; i < num_bin; ++i) {
      if (i != default_bin) {
778
779
780
        data[default_bin].sum_gradients -= data[i].sum_gradients;
        data[default_bin].sum_hessians -= data[i].sum_hessians;
        data[default_bin].cnt -= data[i].cnt;
Guolin Ke's avatar
Guolin Ke committed
781
782
783
784
785
      }
    }
  }
}

Guolin Ke's avatar
Guolin Ke committed
786
}  // namespace LightGBM