"vscode:/vscode.git/clone" did not exist on "0f3d90e7b0afd39733a5c8aefe772425aad764cc"
basic.py 164 KB
Newer Older
wxchan's avatar
wxchan committed
1
# coding: utf-8
2
"""Wrapper for C API of LightGBM."""
3
import abc
wxchan's avatar
wxchan committed
4
import ctypes
5
import json
wxchan's avatar
wxchan committed
6
import warnings
7
from collections import OrderedDict
8
from copy import deepcopy
9
10
from functools import wraps
from logging import Logger
11
12
13
from os import SEEK_END
from os.path import getsize
from pathlib import Path
14
from tempfile import NamedTemporaryFile
15
from typing import Any, Callable, Dict, Iterable, List, Optional, Set, Tuple, Union
wxchan's avatar
wxchan committed
16
17
18
19

import numpy as np
import scipy.sparse

20
from .compat import PANDAS_INSTALLED, concat, dt_DataTable, pd_CategoricalDtype, pd_DataFrame, pd_Series
wxchan's avatar
wxchan committed
21
22
from .libpath import find_lib_path

23
24
25
26
27
28
29
30
31
32
33
34
ZERO_THRESHOLD = 1e-35


def _get_sample_count(total_nrow: int, params: str):
    sample_cnt = ctypes.c_int(0)
    _safe_call(_LIB.LGBM_GetSampleCount(
        ctypes.c_int32(total_nrow),
        c_str(params),
        ctypes.byref(sample_cnt),
    ))
    return sample_cnt.value

wxchan's avatar
wxchan committed
35

36
class _DummyLogger:
37
    def info(self, msg: str) -> None:
38
39
        print(msg)

40
    def warning(self, msg: str) -> None:
41
42
43
        warnings.warn(msg, stacklevel=3)


44
45
46
_LOGGER: Any = _DummyLogger()
_INFO_METHOD_NAME = "info"
_WARNING_METHOD_NAME = "warning"
47
48


49
50
51
def register_logger(
    logger: Any, info_method_name: str = "info", warning_method_name: str = "warning"
) -> None:
52
53
54
55
    """Register custom logger.

    Parameters
    ----------
56
    logger : Any
57
        Custom logger.
58
59
60
61
    info_method_name : str, optional (default="info")
        Method used to log info messages.
    warning_method_name : str, optional (default="warning")
        Method used to log warning messages.
62
    """
63
64
65
66
67
68
69
70
71
    def _has_method(logger: Any, method_name: str) -> bool:
        return callable(getattr(logger, method_name, None))

    if not _has_method(logger, info_method_name) or not _has_method(logger, warning_method_name):
        raise TypeError(
            f"Logger must provide '{info_method_name}' and '{warning_method_name}' method"
        )

    global _LOGGER, _INFO_METHOD_NAME, _WARNING_METHOD_NAME
72
    _LOGGER = logger
73
74
    _INFO_METHOD_NAME = info_method_name
    _WARNING_METHOD_NAME = warning_method_name
75
76


77
def _normalize_native_string(func: Callable[[str], None]) -> Callable[[str], None]:
78
    """Join log messages from native library which come by chunks."""
79
    msg_normalized: List[str] = []
80
81

    @wraps(func)
82
    def wrapper(msg: str) -> None:
83
84
85
86
87
88
89
90
91
92
93
        nonlocal msg_normalized
        if msg.strip() == '':
            msg = ''.join(msg_normalized)
            msg_normalized = []
            return func(msg)
        else:
            msg_normalized.append(msg)

    return wrapper


94
def _log_info(msg: str) -> None:
95
    getattr(_LOGGER, _INFO_METHOD_NAME)(msg)
96
97


98
def _log_warning(msg: str) -> None:
99
    getattr(_LOGGER, _WARNING_METHOD_NAME)(msg)
100
101
102


@_normalize_native_string
103
def _log_native(msg: str) -> None:
104
    getattr(_LOGGER, _INFO_METHOD_NAME)(msg)
105
106


107
def _log_callback(msg: bytes) -> None:
108
    """Redirect logs from native library into Python."""
109
    _log_native(str(msg.decode('utf-8')))
110
111


wxchan's avatar
wxchan committed
112
def _load_lib():
113
    """Load LightGBM library."""
wxchan's avatar
wxchan committed
114
115
    lib_path = find_lib_path()
    if len(lib_path) == 0:
116
        return None
wxchan's avatar
wxchan committed
117
118
    lib = ctypes.cdll.LoadLibrary(lib_path[0])
    lib.LGBM_GetLastError.restype = ctypes.c_char_p
119
120
121
    callback = ctypes.CFUNCTYPE(None, ctypes.c_char_p)
    lib.callback = callback(_log_callback)
    if lib.LGBM_RegisterLogCallback(lib.callback) != 0:
122
        raise LightGBMError(lib.LGBM_GetLastError().decode('utf-8'))
wxchan's avatar
wxchan committed
123
124
    return lib

wxchan's avatar
wxchan committed
125

wxchan's avatar
wxchan committed
126
127
_LIB = _load_lib()

wxchan's avatar
wxchan committed
128

129
NUMERIC_TYPES = (int, float, bool)
130
_ArrayLike = Union[List, np.ndarray, pd_Series]
131
132


133
def _safe_call(ret: int) -> None:
134
135
    """Check the return value from C API call.

wxchan's avatar
wxchan committed
136
137
138
    Parameters
    ----------
    ret : int
139
        The return value from C API calls.
wxchan's avatar
wxchan committed
140
141
    """
    if ret != 0:
142
        raise LightGBMError(_LIB.LGBM_GetLastError().decode('utf-8'))
wxchan's avatar
wxchan committed
143

wxchan's avatar
wxchan committed
144

wxchan's avatar
wxchan committed
145
def is_numeric(obj):
146
    """Check whether object is a number or not, include numpy number, etc."""
wxchan's avatar
wxchan committed
147
148
149
    try:
        float(obj)
        return True
wxchan's avatar
wxchan committed
150
151
152
    except (TypeError, ValueError):
        # TypeError: obj is not a string or a number
        # ValueError: invalid literal
wxchan's avatar
wxchan committed
153
154
        return False

wxchan's avatar
wxchan committed
155

wxchan's avatar
wxchan committed
156
def is_numpy_1d_array(data):
157
    """Check whether data is a numpy 1-D array."""
158
    return isinstance(data, np.ndarray) and len(data.shape) == 1
wxchan's avatar
wxchan committed
159

wxchan's avatar
wxchan committed
160

161
162
163
164
165
166
167
168
def is_numpy_column_array(data):
    """Check whether data is a column numpy array."""
    if not isinstance(data, np.ndarray):
        return False
    shape = data.shape
    return len(shape) == 2 and shape[1] == 1


169
170
def cast_numpy_array_to_dtype(array, dtype):
    """Cast numpy array to given dtype."""
171
172
173
174
175
    if array.dtype == dtype:
        return array
    return array.astype(dtype=dtype, copy=False)


wxchan's avatar
wxchan committed
176
def is_1d_list(data):
177
178
    """Check whether data is a 1-D list."""
    return isinstance(data, list) and (not data or is_numeric(data[0]))
wxchan's avatar
wxchan committed
179

wxchan's avatar
wxchan committed
180

181
182
183
184
185
186
187
188
189
190
def _is_1d_collection(data: Any) -> bool:
    """Check whether data is a 1-D collection."""
    return (
        is_numpy_1d_array(data)
        or is_numpy_column_array(data)
        or is_1d_list(data)
        or isinstance(data, pd_Series)
    )


191
def list_to_1d_numpy(data, dtype=np.float32, name='list'):
192
    """Convert data to numpy 1-D array."""
wxchan's avatar
wxchan committed
193
    if is_numpy_1d_array(data):
194
        return cast_numpy_array_to_dtype(data, dtype)
195
196
197
    elif is_numpy_column_array(data):
        _log_warning('Converting column-vector to 1d array')
        array = data.ravel()
198
        return cast_numpy_array_to_dtype(array, dtype)
wxchan's avatar
wxchan committed
199
200
    elif is_1d_list(data):
        return np.array(data, dtype=dtype, copy=False)
201
    elif isinstance(data, pd_Series):
202
        _check_for_bad_pandas_dtypes(data.to_frame().dtypes)
203
        return np.array(data, dtype=dtype, copy=False)  # SparseArray should be supported as well
wxchan's avatar
wxchan committed
204
    else:
205
206
        raise TypeError(f"Wrong type({type(data).__name__}) for {name}.\n"
                        "It should be list, numpy 1-D array or pandas Series")
wxchan's avatar
wxchan committed
207

wxchan's avatar
wxchan committed
208

209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
def _is_numpy_2d_array(data: Any) -> bool:
    """Check whether data is a numpy 2-D array."""
    return isinstance(data, np.ndarray) and len(data.shape) == 2 and data.shape[1] > 1


def _is_2d_list(data: Any) -> bool:
    """Check whether data is a 2-D list."""
    return isinstance(data, list) and len(data) > 0 and is_1d_list(data[0])


def _is_2d_collection(data: Any) -> bool:
    """Check whether data is a 2-D collection."""
    return (
        _is_numpy_2d_array(data)
        or _is_2d_list(data)
        or isinstance(data, pd_DataFrame)
    )


def _data_to_2d_numpy(data: Any, dtype: type = np.float32, name: str = 'list') -> np.ndarray:
    """Convert data to numpy 2-D array."""
    if _is_numpy_2d_array(data):
        return cast_numpy_array_to_dtype(data, dtype)
    if _is_2d_list(data):
        return np.array(data, dtype=dtype)
    if isinstance(data, pd_DataFrame):
235
        _check_for_bad_pandas_dtypes(data.dtypes)
236
237
238
239
240
        return cast_numpy_array_to_dtype(data.values, dtype)
    raise TypeError(f"Wrong type({type(data).__name__}) for {name}.\n"
                    "It should be list of lists, numpy 2-D array or pandas DataFrame")


wxchan's avatar
wxchan committed
241
def cfloat32_array_to_numpy(cptr, length):
242
    """Convert a ctypes float pointer array to a numpy array."""
wxchan's avatar
wxchan committed
243
    if isinstance(cptr, ctypes.POINTER(ctypes.c_float)):
244
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
wxchan's avatar
wxchan committed
245
    else:
246
        raise RuntimeError('Expected float pointer')
wxchan's avatar
wxchan committed
247

Guolin Ke's avatar
Guolin Ke committed
248

Guolin Ke's avatar
Guolin Ke committed
249
def cfloat64_array_to_numpy(cptr, length):
250
    """Convert a ctypes double pointer array to a numpy array."""
Guolin Ke's avatar
Guolin Ke committed
251
    if isinstance(cptr, ctypes.POINTER(ctypes.c_double)):
252
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
Guolin Ke's avatar
Guolin Ke committed
253
254
255
    else:
        raise RuntimeError('Expected double pointer')

wxchan's avatar
wxchan committed
256

wxchan's avatar
wxchan committed
257
def cint32_array_to_numpy(cptr, length):
258
    """Convert a ctypes int pointer array to a numpy array."""
wxchan's avatar
wxchan committed
259
    if isinstance(cptr, ctypes.POINTER(ctypes.c_int32)):
260
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
wxchan's avatar
wxchan committed
261
    else:
262
263
264
265
266
267
        raise RuntimeError('Expected int32 pointer')


def cint64_array_to_numpy(cptr, length):
    """Convert a ctypes int pointer array to a numpy array."""
    if isinstance(cptr, ctypes.POINTER(ctypes.c_int64)):
268
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
269
270
    else:
        raise RuntimeError('Expected int64 pointer')
wxchan's avatar
wxchan committed
271

wxchan's avatar
wxchan committed
272

wxchan's avatar
wxchan committed
273
def c_str(string):
274
    """Convert a Python string to C string."""
wxchan's avatar
wxchan committed
275
276
    return ctypes.c_char_p(string.encode('utf-8'))

wxchan's avatar
wxchan committed
277

wxchan's avatar
wxchan committed
278
def c_array(ctype, values):
279
    """Convert a Python array to C array."""
wxchan's avatar
wxchan committed
280
281
    return (ctype * len(values))(*values)

wxchan's avatar
wxchan committed
282

283
284
285
286
287
288
289
290
291
292
def json_default_with_numpy(obj):
    """Convert numpy classes to JSON serializable objects."""
    if isinstance(obj, (np.integer, np.floating, np.bool_)):
        return obj.item()
    elif isinstance(obj, np.ndarray):
        return obj.tolist()
    else:
        return obj


wxchan's avatar
wxchan committed
293
def param_dict_to_str(data):
294
    """Convert Python dictionary to string, which is passed to C API."""
295
    if data is None or not data:
wxchan's avatar
wxchan committed
296
297
298
        return ""
    pairs = []
    for key, val in data.items():
299
        if isinstance(val, (list, tuple, set)) or is_numpy_1d_array(val):
300
301
            def to_string(x):
                if isinstance(x, list):
302
                    return f"[{','.join(map(str, x))}]"
303
304
                else:
                    return str(x)
305
            pairs.append(f"{key}={','.join(map(to_string, val))}")
306
        elif isinstance(val, (str, Path, NUMERIC_TYPES)) or is_numeric(val):
307
            pairs.append(f"{key}={val}")
308
        elif val is not None:
309
            raise TypeError(f'Unknown type of parameter:{key}, got:{type(val).__name__}')
wxchan's avatar
wxchan committed
310
    return ' '.join(pairs)
311

wxchan's avatar
wxchan committed
312

313
class _TempFile:
314
315
    """Proxy class to workaround errors on Windows."""

316
317
318
    def __enter__(self):
        with NamedTemporaryFile(prefix="lightgbm_tmp_", delete=True) as f:
            self.name = f.name
319
            self.path = Path(self.name)
320
        return self
wxchan's avatar
wxchan committed
321

322
    def __exit__(self, exc_type, exc_val, exc_tb):
323
324
        if self.path.is_file():
            self.path.unlink()
325

wxchan's avatar
wxchan committed
326

327
class LightGBMError(Exception):
328
329
    """Error thrown by LightGBM."""

330
331
332
    pass


333
334
335
336
337
338
339
340
# DeprecationWarning is not shown by default, so let's create our own with higher level
class LGBMDeprecationWarning(UserWarning):
    """Custom deprecation warning."""

    pass


class _ConfigAliases:
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
    # lazy evaluation to allow import without dynamic library, e.g., for docs generation
    aliases = None

    @staticmethod
    def _get_all_param_aliases() -> Dict[str, Set[str]]:
        buffer_len = 1 << 20
        tmp_out_len = ctypes.c_int64(0)
        string_buffer = ctypes.create_string_buffer(buffer_len)
        ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
        _safe_call(_LIB.LGBM_DumpParamAliases(
            ctypes.c_int64(buffer_len),
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
        # if buffer length is not long enough, re-allocate a buffer
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
            ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
            _safe_call(_LIB.LGBM_DumpParamAliases(
                ctypes.c_int64(actual_len),
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
        aliases = json.loads(
            string_buffer.value.decode('utf-8'),
            object_hook=lambda obj: {k: set(v) | {k} for k, v in obj.items()}
        )
        return aliases
368
369

    @classmethod
370
371
372
    def get(cls, *args) -> Set[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
373
374
        ret = set()
        for i in args:
375
            ret |= cls.aliases.get(i, {i})
376
377
        return ret

378
    @classmethod
379
380
381
    def get_by_alias(cls, *args) -> Set[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
382
383
384
385
386
387
388
389
        ret = set(args)
        for arg in args:
            for aliases in cls.aliases.values():
                if arg in aliases:
                    ret |= aliases
                    break
        return ret

390

391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
def _choose_param_value(main_param_name: str, params: Dict[str, Any], default_value: Any) -> Dict[str, Any]:
    """Get a single parameter value, accounting for aliases.

    Parameters
    ----------
    main_param_name : str
        Name of the main parameter to get a value for. One of the keys of ``_ConfigAliases``.
    params : dict
        Dictionary of LightGBM parameters.
    default_value : Any
        Default value to use for the parameter, if none is found in ``params``.

    Returns
    -------
    params : dict
        A ``params`` dict with exactly one value for ``main_param_name``, and all aliases ``main_param_name`` removed.
        If both ``main_param_name`` and one or more aliases for it are found, the value of ``main_param_name`` will be preferred.
    """
    # avoid side effects on passed-in parameters
    params = deepcopy(params)

    # find a value, and remove other aliases with .pop()
    # prefer the value of 'main_param_name' if it exists, otherwise search the aliases
    found_value = None
    if main_param_name in params.keys():
        found_value = params[main_param_name]

    for param in _ConfigAliases.get(main_param_name):
        val = params.pop(param, None)
        if found_value is None and val is not None:
            found_value = val

    if found_value is not None:
        params[main_param_name] = found_value
    else:
        params[main_param_name] = default_value

    return params


431
432
MAX_INT32 = (1 << 31) - 1

433
"""Macro definition of data type in C API of LightGBM"""
wxchan's avatar
wxchan committed
434
435
436
437
C_API_DTYPE_FLOAT32 = 0
C_API_DTYPE_FLOAT64 = 1
C_API_DTYPE_INT32 = 2
C_API_DTYPE_INT64 = 3
Guolin Ke's avatar
Guolin Ke committed
438

439
"""Matrix is row major in Python"""
wxchan's avatar
wxchan committed
440
441
C_API_IS_ROW_MAJOR = 1

442
"""Macro definition of prediction type in C API of LightGBM"""
wxchan's avatar
wxchan committed
443
444
445
C_API_PREDICT_NORMAL = 0
C_API_PREDICT_RAW_SCORE = 1
C_API_PREDICT_LEAF_INDEX = 2
446
C_API_PREDICT_CONTRIB = 3
wxchan's avatar
wxchan committed
447

448
449
450
451
"""Macro definition of sparse matrix type"""
C_API_MATRIX_TYPE_CSR = 0
C_API_MATRIX_TYPE_CSC = 1

452
453
454
455
"""Macro definition of feature importance type"""
C_API_FEATURE_IMPORTANCE_SPLIT = 0
C_API_FEATURE_IMPORTANCE_GAIN = 1

456
"""Data type of data field"""
wxchan's avatar
wxchan committed
457
458
FIELD_TYPE_MAPPER = {"label": C_API_DTYPE_FLOAT32,
                     "weight": C_API_DTYPE_FLOAT32,
Guolin Ke's avatar
Guolin Ke committed
459
                     "init_score": C_API_DTYPE_FLOAT64,
460
                     "group": C_API_DTYPE_INT32}
wxchan's avatar
wxchan committed
461

462
463
464
465
"""String name to int feature importance type mapper"""
FEATURE_IMPORTANCE_TYPE_MAPPER = {"split": C_API_FEATURE_IMPORTANCE_SPLIT,
                                  "gain": C_API_FEATURE_IMPORTANCE_GAIN}

wxchan's avatar
wxchan committed
466

467
def convert_from_sliced_object(data):
468
    """Fix the memory of multi-dimensional sliced object."""
469
    if isinstance(data, np.ndarray) and isinstance(data.base, np.ndarray):
470
        if not data.flags.c_contiguous:
471
472
            _log_warning("Usage of np.ndarray subset (sliced data) is not recommended "
                         "due to it will double the peak memory cost in LightGBM.")
473
474
475
476
            return np.copy(data)
    return data


wxchan's avatar
wxchan committed
477
def c_float_array(data):
478
    """Get pointer of float numpy array / list."""
wxchan's avatar
wxchan committed
479
480
481
    if is_1d_list(data):
        data = np.array(data, copy=False)
    if is_numpy_1d_array(data):
482
483
        data = convert_from_sliced_object(data)
        assert data.flags.c_contiguous
wxchan's avatar
wxchan committed
484
485
486
487
488
489
490
        if data.dtype == np.float32:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_float))
            type_data = C_API_DTYPE_FLOAT32
        elif data.dtype == np.float64:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_double))
            type_data = C_API_DTYPE_FLOAT64
        else:
491
            raise TypeError(f"Expected np.float32 or np.float64, met type({data.dtype})")
wxchan's avatar
wxchan committed
492
    else:
493
        raise TypeError(f"Unknown type({type(data).__name__})")
494
    return (ptr_data, type_data, data)  # return `data` to avoid the temporary copy is freed
wxchan's avatar
wxchan committed
495

wxchan's avatar
wxchan committed
496

wxchan's avatar
wxchan committed
497
def c_int_array(data):
498
    """Get pointer of int numpy array / list."""
wxchan's avatar
wxchan committed
499
500
501
    if is_1d_list(data):
        data = np.array(data, copy=False)
    if is_numpy_1d_array(data):
502
503
        data = convert_from_sliced_object(data)
        assert data.flags.c_contiguous
wxchan's avatar
wxchan committed
504
505
506
507
508
509
510
        if data.dtype == np.int32:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_int32))
            type_data = C_API_DTYPE_INT32
        elif data.dtype == np.int64:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_int64))
            type_data = C_API_DTYPE_INT64
        else:
511
            raise TypeError(f"Expected np.int32 or np.int64, met type({data.dtype})")
wxchan's avatar
wxchan committed
512
    else:
513
        raise TypeError(f"Unknown type({type(data).__name__})")
514
    return (ptr_data, type_data, data)  # return `data` to avoid the temporary copy is freed
wxchan's avatar
wxchan committed
515

wxchan's avatar
wxchan committed
516

517
def _check_for_bad_pandas_dtypes(pandas_dtypes_series):
518
519
520
521
522
523
524
525
    float128 = getattr(np, 'float128', type(None))

    def is_allowed_numpy_dtype(dtype):
        return (
            issubclass(dtype, (np.integer, np.floating, np.bool_))
            and not issubclass(dtype, (np.timedelta64, float128))
        )

526
527
528
529
530
531
532
533
    bad_pandas_dtypes = [
        f'{column_name}: {pandas_dtype}'
        for column_name, pandas_dtype in pandas_dtypes_series.iteritems()
        if not is_allowed_numpy_dtype(pandas_dtype.type)
    ]
    if bad_pandas_dtypes:
        raise ValueError('pandas dtypes must be int, float or bool.\n'
                         f'Fields with bad pandas dtypes: {", ".join(bad_pandas_dtypes)}')
534
535


536
def _data_from_pandas(data, feature_name, categorical_feature, pandas_categorical):
537
    if isinstance(data, pd_DataFrame):
538
539
        if len(data.shape) != 2 or data.shape[0] < 1:
            raise ValueError('Input data must be 2 dimensional and non empty.')
540
541
        if feature_name == 'auto' or feature_name is None:
            data = data.rename(columns=str)
542
        cat_cols = [col for col, dtype in zip(data.columns, data.dtypes) if isinstance(dtype, pd_CategoricalDtype)]
543
        cat_cols_not_ordered = [col for col in cat_cols if not data[col].cat.ordered]
544
545
546
547
548
        if pandas_categorical is None:  # train dataset
            pandas_categorical = [list(data[col].cat.categories) for col in cat_cols]
        else:
            if len(cat_cols) != len(pandas_categorical):
                raise ValueError('train and valid dataset categorical_feature do not match.')
549
            for col, category in zip(cat_cols, pandas_categorical):
550
551
                if list(data[col].cat.categories) != list(category):
                    data[col] = data[col].cat.set_categories(category)
552
        if len(cat_cols):  # cat_cols is list
553
            data = data.copy()  # not alter origin DataFrame
554
            data[cat_cols] = data[cat_cols].apply(lambda x: x.cat.codes).replace({-1: np.nan})
555
556
557
        if categorical_feature is not None:
            if feature_name is None:
                feature_name = list(data.columns)
558
            if categorical_feature == 'auto':  # use cat cols from DataFrame
559
                categorical_feature = cat_cols_not_ordered
560
561
            else:  # use cat cols specified by user
                categorical_feature = list(categorical_feature)
562
563
        if feature_name == 'auto':
            feature_name = list(data.columns)
564
        _check_for_bad_pandas_dtypes(data.dtypes)
565
566
567
568
        df_dtypes = [dtype.type for dtype in data.dtypes]
        df_dtypes.append(np.float32)  # so that the target dtype considers floats
        target_dtype = np.find_common_type(df_dtypes, [])
        data = data.astype(target_dtype, copy=False).values
569
570
571
572
573
574
    else:
        if feature_name == 'auto':
            feature_name = None
        if categorical_feature == 'auto':
            categorical_feature = None
    return data, feature_name, categorical_feature, pandas_categorical
575
576
577


def _label_from_pandas(label):
578
    if isinstance(label, pd_DataFrame):
579
580
        if len(label.columns) > 1:
            raise ValueError('DataFrame for label cannot have multiple columns')
581
        _check_for_bad_pandas_dtypes(label.dtypes)
582
        label = np.ravel(label.values.astype(np.float32, copy=False))
583
584
585
    return label


586
def _dump_pandas_categorical(pandas_categorical, file_name=None):
587
588
    categorical_json = json.dumps(pandas_categorical, default=json_default_with_numpy)
    pandas_str = f'\npandas_categorical:{categorical_json}\n'
589
590
591
592
593
594
595
    if file_name is not None:
        with open(file_name, 'a') as f:
            f.write(pandas_str)
    return pandas_str


def _load_pandas_categorical(file_name=None, model_str=None):
596
597
    pandas_key = 'pandas_categorical:'
    offset = -len(pandas_key)
598
    if file_name is not None:
599
        max_offset = -getsize(file_name)
600
601
602
603
        with open(file_name, 'rb') as f:
            while True:
                if offset < max_offset:
                    offset = max_offset
604
                f.seek(offset, SEEK_END)
605
606
607
608
                lines = f.readlines()
                if len(lines) >= 2:
                    break
                offset *= 2
609
        last_line = lines[-1].decode('utf-8').strip()
610
        if not last_line.startswith(pandas_key):
611
            last_line = lines[-2].decode('utf-8').strip()
612
    elif model_str is not None:
613
614
615
616
617
618
        idx = model_str.rfind('\n', 0, offset)
        last_line = model_str[idx:].strip()
    if last_line.startswith(pandas_key):
        return json.loads(last_line[len(pandas_key):])
    else:
        return None
619
620


621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
class Sequence(abc.ABC):
    """
    Generic data access interface.

    Object should support the following operations:

    .. code-block::

        # Get total row number.
        >>> len(seq)
        # Random access by row index. Used for data sampling.
        >>> seq[10]
        # Range data access. Used to read data in batch when constructing Dataset.
        >>> seq[0:100]
        # Optionally specify batch_size to control range data read size.
        >>> seq.batch_size

    - With random access, **data sampling does not need to go through all data**.
    - With range data access, there's **no need to read all data into memory thus reduce memory usage**.

641
642
    .. versionadded:: 3.3.0

643
644
645
646
647
648
649
650
651
    Attributes
    ----------
    batch_size : int
        Default size of a batch.
    """

    batch_size = 4096  # Defaults to read 4K rows in each batch.

    @abc.abstractmethod
652
    def __getitem__(self, idx: Union[int, slice, List[int]]) -> np.ndarray:
653
654
655
656
657
658
659
        """Return data for given row index.

        A basic implementation should look like this:

        .. code-block:: python

            if isinstance(idx, numbers.Integral):
660
                return self._get_one_line(idx)
661
            elif isinstance(idx, slice):
662
663
                return np.stack([self._get_one_line(i) for i in range(idx.start, idx.stop)])
            elif isinstance(idx, list):
664
                # Only required if using ``Dataset.subset()``.
665
                return np.array([self._get_one_line(i) for i in idx])
666
            else:
667
                raise TypeError(f"Sequence index must be integer, slice or list, got {type(idx).__name__}")
668
669
670

        Parameters
        ----------
671
        idx : int, slice[int], list[int]
672
673
674
675
            Item index.

        Returns
        -------
676
        result : numpy 1-D array or numpy 2-D array
677
            1-D array if idx is int, 2-D array if idx is slice or list.
678
679
680
681
682
683
684
685
686
        """
        raise NotImplementedError("Sub-classes of lightgbm.Sequence must implement __getitem__()")

    @abc.abstractmethod
    def __len__(self) -> int:
        """Return row count of this sequence."""
        raise NotImplementedError("Sub-classes of lightgbm.Sequence must implement __len__()")


687
class _InnerPredictor:
688
689
690
691
692
    """_InnerPredictor of LightGBM.

    Not exposed to user.
    Used only for prediction, usually used for continued training.

Nikita Titov's avatar
Nikita Titov committed
693
694
695
    .. note::

        Can be converted from Booster, but cannot be converted to Booster.
Guolin Ke's avatar
Guolin Ke committed
696
    """
697

698
    def __init__(self, model_file=None, booster_handle=None, pred_parameter=None):
699
        """Initialize the _InnerPredictor.
wxchan's avatar
wxchan committed
700
701
702

        Parameters
        ----------
703
        model_file : str, pathlib.Path or None, optional (default=None)
wxchan's avatar
wxchan committed
704
            Path to the model file.
705
706
707
        booster_handle : object or None, optional (default=None)
            Handle of Booster.
        pred_parameter: dict or None, optional (default=None)
708
            Other parameters for the prediction.
wxchan's avatar
wxchan committed
709
710
711
712
713
        """
        self.handle = ctypes.c_void_p()
        self.__is_manage_handle = True
        if model_file is not None:
            """Prediction task"""
Guolin Ke's avatar
Guolin Ke committed
714
            out_num_iterations = ctypes.c_int(0)
wxchan's avatar
wxchan committed
715
            _safe_call(_LIB.LGBM_BoosterCreateFromModelfile(
716
                c_str(str(model_file)),
wxchan's avatar
wxchan committed
717
718
                ctypes.byref(out_num_iterations),
                ctypes.byref(self.handle)))
Guolin Ke's avatar
Guolin Ke committed
719
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
720
721
722
723
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
                self.handle,
                ctypes.byref(out_num_class)))
            self.num_class = out_num_class.value
724
            self.num_total_iteration = out_num_iterations.value
725
            self.pandas_categorical = _load_pandas_categorical(file_name=model_file)
wxchan's avatar
wxchan committed
726
        elif booster_handle is not None:
Guolin Ke's avatar
Guolin Ke committed
727
            self.__is_manage_handle = False
wxchan's avatar
wxchan committed
728
            self.handle = booster_handle
Guolin Ke's avatar
Guolin Ke committed
729
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
730
731
732
733
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
                self.handle,
                ctypes.byref(out_num_class)))
            self.num_class = out_num_class.value
734
            self.num_total_iteration = self.current_iteration()
735
            self.pandas_categorical = None
wxchan's avatar
wxchan committed
736
        else:
737
            raise TypeError('Need model_file or booster_handle to create a predictor')
wxchan's avatar
wxchan committed
738

739
740
        pred_parameter = {} if pred_parameter is None else pred_parameter
        self.pred_parameter = param_dict_to_str(pred_parameter)
cbecker's avatar
cbecker committed
741

wxchan's avatar
wxchan committed
742
    def __del__(self):
743
744
745
746
747
        try:
            if self.__is_manage_handle:
                _safe_call(_LIB.LGBM_BoosterFree(self.handle))
        except AttributeError:
            pass
wxchan's avatar
wxchan committed
748

749
750
751
752
753
    def __getstate__(self):
        this = self.__dict__.copy()
        this.pop('handle', None)
        return this

754
    def predict(self, data, start_iteration=0, num_iteration=-1,
755
                raw_score=False, pred_leaf=False, pred_contrib=False, data_has_header=False,
wxchan's avatar
wxchan committed
756
                is_reshape=True):
757
        """Predict logic.
wxchan's avatar
wxchan committed
758
759
760

        Parameters
        ----------
761
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
762
            Data source for prediction.
763
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
764
765
        start_iteration : int, optional (default=0)
            Start index of the iteration to predict.
766
767
768
769
770
771
772
773
774
775
776
777
778
        num_iteration : int, optional (default=-1)
            Iteration used for prediction.
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        pred_leaf : bool, optional (default=False)
            Whether to predict leaf index.
        pred_contrib : bool, optional (default=False)
            Whether to predict feature contributions.
        data_has_header : bool, optional (default=False)
            Whether data has header.
            Used only for txt data.
        is_reshape : bool, optional (default=True)
            Whether to reshape to (nrow, ncol).
wxchan's avatar
wxchan committed
779
780
781

        Returns
        -------
782
        result : numpy array, scipy.sparse or list of scipy.sparse
783
            Prediction result.
784
            Can be sparse or a list of sparse objects (each element represents predictions for one class) for feature contributions (when ``pred_contrib=True``).
wxchan's avatar
wxchan committed
785
        """
wxchan's avatar
wxchan committed
786
        if isinstance(data, Dataset):
787
            raise TypeError("Cannot use Dataset instance for prediction, please use raw data instead")
788
        data = _data_from_pandas(data, None, None, self.pandas_categorical)[0]
wxchan's avatar
wxchan committed
789
790
791
792
793
        predict_type = C_API_PREDICT_NORMAL
        if raw_score:
            predict_type = C_API_PREDICT_RAW_SCORE
        if pred_leaf:
            predict_type = C_API_PREDICT_LEAF_INDEX
794
795
        if pred_contrib:
            predict_type = C_API_PREDICT_CONTRIB
wxchan's avatar
wxchan committed
796
        int_data_has_header = 1 if data_has_header else 0
cbecker's avatar
cbecker committed
797

798
        if isinstance(data, (str, Path)):
799
            with _TempFile() as f:
wxchan's avatar
wxchan committed
800
801
                _safe_call(_LIB.LGBM_BoosterPredictForFile(
                    self.handle,
802
                    c_str(str(data)),
Guolin Ke's avatar
Guolin Ke committed
803
804
                    ctypes.c_int(int_data_has_header),
                    ctypes.c_int(predict_type),
805
                    ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
806
                    ctypes.c_int(num_iteration),
807
                    c_str(self.pred_parameter),
wxchan's avatar
wxchan committed
808
                    c_str(f.name)))
809
810
                preds = np.loadtxt(f.name, dtype=np.float64)
                nrow = preds.shape[0]
wxchan's avatar
wxchan committed
811
        elif isinstance(data, scipy.sparse.csr_matrix):
812
            preds, nrow = self.__pred_for_csr(data, start_iteration, num_iteration, predict_type)
Guolin Ke's avatar
Guolin Ke committed
813
        elif isinstance(data, scipy.sparse.csc_matrix):
814
            preds, nrow = self.__pred_for_csc(data, start_iteration, num_iteration, predict_type)
wxchan's avatar
wxchan committed
815
        elif isinstance(data, np.ndarray):
816
            preds, nrow = self.__pred_for_np2d(data, start_iteration, num_iteration, predict_type)
817
818
819
        elif isinstance(data, list):
            try:
                data = np.array(data)
820
            except BaseException:
821
                raise ValueError('Cannot convert data list to numpy array.')
822
            preds, nrow = self.__pred_for_np2d(data, start_iteration, num_iteration, predict_type)
823
        elif isinstance(data, dt_DataTable):
824
            preds, nrow = self.__pred_for_np2d(data.to_numpy(), start_iteration, num_iteration, predict_type)
wxchan's avatar
wxchan committed
825
826
        else:
            try:
827
                _log_warning('Converting data to scipy sparse matrix.')
wxchan's avatar
wxchan committed
828
                csr = scipy.sparse.csr_matrix(data)
829
            except BaseException:
830
                raise TypeError(f'Cannot predict data for type {type(data).__name__}')
831
            preds, nrow = self.__pred_for_csr(csr, start_iteration, num_iteration, predict_type)
wxchan's avatar
wxchan committed
832
833
        if pred_leaf:
            preds = preds.astype(np.int32)
834
835
        is_sparse = scipy.sparse.issparse(preds) or isinstance(preds, list)
        if is_reshape and not is_sparse and preds.size != nrow:
wxchan's avatar
wxchan committed
836
            if preds.size % nrow == 0:
837
                preds = preds.reshape(nrow, -1)
wxchan's avatar
wxchan committed
838
            else:
839
                raise ValueError(f'Length of predict result ({preds.size}) cannot be divide nrow ({nrow})')
wxchan's avatar
wxchan committed
840
841
        return preds

842
    def __get_num_preds(self, start_iteration, num_iteration, nrow, predict_type):
843
        """Get size of prediction result."""
844
        if nrow > MAX_INT32:
845
            raise LightGBMError('LightGBM cannot perform prediction for data '
846
                                f'with number of rows greater than MAX_INT32 ({MAX_INT32}).\n'
847
                                'You can split your data into chunks '
848
                                'and then concatenate predictions for them')
Guolin Ke's avatar
Guolin Ke committed
849
850
851
        n_preds = ctypes.c_int64(0)
        _safe_call(_LIB.LGBM_BoosterCalcNumPredict(
            self.handle,
Guolin Ke's avatar
Guolin Ke committed
852
853
            ctypes.c_int(nrow),
            ctypes.c_int(predict_type),
854
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
855
            ctypes.c_int(num_iteration),
Guolin Ke's avatar
Guolin Ke committed
856
857
            ctypes.byref(n_preds)))
        return n_preds.value
wxchan's avatar
wxchan committed
858

859
    def __pred_for_np2d(self, mat, start_iteration, num_iteration, predict_type):
860
        """Predict for a 2-D numpy matrix."""
wxchan's avatar
wxchan committed
861
        if len(mat.shape) != 2:
862
            raise ValueError('Input numpy.ndarray or list must be 2 dimensional')
wxchan's avatar
wxchan committed
863

864
        def inner_predict(mat, start_iteration, num_iteration, predict_type, preds=None):
865
866
            if mat.dtype == np.float32 or mat.dtype == np.float64:
                data = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
867
            else:  # change non-float data to float data, need to copy
868
869
                data = np.array(mat.reshape(mat.size), dtype=np.float32)
            ptr_data, type_ptr_data, _ = c_float_array(data)
870
            n_preds = self.__get_num_preds(start_iteration, num_iteration, mat.shape[0], predict_type)
871
            if preds is None:
872
                preds = np.empty(n_preds, dtype=np.float64)
873
874
875
876
877
878
879
            elif len(preds.shape) != 1 or len(preds) != n_preds:
                raise ValueError("Wrong length of pre-allocated predict array")
            out_num_preds = ctypes.c_int64(0)
            _safe_call(_LIB.LGBM_BoosterPredictForMat(
                self.handle,
                ptr_data,
                ctypes.c_int(type_ptr_data),
880
881
                ctypes.c_int32(mat.shape[0]),
                ctypes.c_int32(mat.shape[1]),
882
883
                ctypes.c_int(C_API_IS_ROW_MAJOR),
                ctypes.c_int(predict_type),
884
                ctypes.c_int(start_iteration),
885
886
887
888
889
890
891
892
893
894
895
896
                ctypes.c_int(num_iteration),
                c_str(self.pred_parameter),
                ctypes.byref(out_num_preds),
                preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
            if n_preds != out_num_preds.value:
                raise ValueError("Wrong length for predict results")
            return preds, mat.shape[0]

        nrow = mat.shape[0]
        if nrow > MAX_INT32:
            sections = np.arange(start=MAX_INT32, stop=nrow, step=MAX_INT32)
            # __get_num_preds() cannot work with nrow > MAX_INT32, so calculate overall number of predictions piecemeal
897
            n_preds = [self.__get_num_preds(start_iteration, num_iteration, i, predict_type) for i in np.diff([0] + list(sections) + [nrow])]
898
            n_preds_sections = np.array([0] + n_preds, dtype=np.intp).cumsum()
899
            preds = np.empty(sum(n_preds), dtype=np.float64)
900
901
            for chunk, (start_idx_pred, end_idx_pred) in zip(np.array_split(mat, sections),
                                                             zip(n_preds_sections, n_preds_sections[1:])):
902
                # avoid memory consumption by arrays concatenation operations
903
                inner_predict(chunk, start_iteration, num_iteration, predict_type, preds[start_idx_pred:end_idx_pred])
904
            return preds, nrow
wxchan's avatar
wxchan committed
905
        else:
906
            return inner_predict(mat, start_iteration, num_iteration, predict_type)
wxchan's avatar
wxchan committed
907

908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
    def __create_sparse_native(self, cs, out_shape, out_ptr_indptr, out_ptr_indices, out_ptr_data,
                               indptr_type, data_type, is_csr=True):
        # create numpy array from output arrays
        data_indices_len = out_shape[0]
        indptr_len = out_shape[1]
        if indptr_type == C_API_DTYPE_INT32:
            out_indptr = cint32_array_to_numpy(out_ptr_indptr, indptr_len)
        elif indptr_type == C_API_DTYPE_INT64:
            out_indptr = cint64_array_to_numpy(out_ptr_indptr, indptr_len)
        else:
            raise TypeError("Expected int32 or int64 type for indptr")
        if data_type == C_API_DTYPE_FLOAT32:
            out_data = cfloat32_array_to_numpy(out_ptr_data, data_indices_len)
        elif data_type == C_API_DTYPE_FLOAT64:
            out_data = cfloat64_array_to_numpy(out_ptr_data, data_indices_len)
        else:
            raise TypeError("Expected float32 or float64 type for data")
        out_indices = cint32_array_to_numpy(out_ptr_indices, data_indices_len)
        # break up indptr based on number of rows (note more than one matrix in multiclass case)
        per_class_indptr_shape = cs.indptr.shape[0]
        # for CSC there is extra column added
        if not is_csr:
            per_class_indptr_shape += 1
        out_indptr_arrays = np.split(out_indptr, out_indptr.shape[0] / per_class_indptr_shape)
        # reformat output into a csr or csc matrix or list of csr or csc matrices
        cs_output_matrices = []
        offset = 0
        for cs_indptr in out_indptr_arrays:
            matrix_indptr_len = cs_indptr[cs_indptr.shape[0] - 1]
            cs_indices = out_indices[offset + cs_indptr[0]:offset + matrix_indptr_len]
            cs_data = out_data[offset + cs_indptr[0]:offset + matrix_indptr_len]
            offset += matrix_indptr_len
            # same shape as input csr or csc matrix except extra column for expected value
            cs_shape = [cs.shape[0], cs.shape[1] + 1]
            # note: make sure we copy data as it will be deallocated next
            if is_csr:
                cs_output_matrices.append(scipy.sparse.csr_matrix((cs_data, cs_indices, cs_indptr), cs_shape))
            else:
                cs_output_matrices.append(scipy.sparse.csc_matrix((cs_data, cs_indices, cs_indptr), cs_shape))
        # free the temporary native indptr, indices, and data
        _safe_call(_LIB.LGBM_BoosterFreePredictSparse(out_ptr_indptr, out_ptr_indices, out_ptr_data,
                                                      ctypes.c_int(indptr_type), ctypes.c_int(data_type)))
        if len(cs_output_matrices) == 1:
            return cs_output_matrices[0]
        return cs_output_matrices

954
    def __pred_for_csr(self, csr, start_iteration, num_iteration, predict_type):
955
        """Predict for a CSR data."""
956
        def inner_predict(csr, start_iteration, num_iteration, predict_type, preds=None):
957
            nrow = len(csr.indptr) - 1
958
            n_preds = self.__get_num_preds(start_iteration, num_iteration, nrow, predict_type)
959
            if preds is None:
960
                preds = np.empty(n_preds, dtype=np.float64)
961
962
963
964
965
966
967
            elif len(preds.shape) != 1 or len(preds) != n_preds:
                raise ValueError("Wrong length of pre-allocated predict array")
            out_num_preds = ctypes.c_int64(0)

            ptr_indptr, type_ptr_indptr, __ = c_int_array(csr.indptr)
            ptr_data, type_ptr_data, _ = c_float_array(csr.data)

968
            assert csr.shape[1] <= MAX_INT32
969
            csr_indices = csr.indices.astype(np.int32, copy=False)
970

971
972
973
            _safe_call(_LIB.LGBM_BoosterPredictForCSR(
                self.handle,
                ptr_indptr,
974
                ctypes.c_int(type_ptr_indptr),
975
                csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
976
977
978
979
980
981
                ptr_data,
                ctypes.c_int(type_ptr_data),
                ctypes.c_int64(len(csr.indptr)),
                ctypes.c_int64(len(csr.data)),
                ctypes.c_int64(csr.shape[1]),
                ctypes.c_int(predict_type),
982
                ctypes.c_int(start_iteration),
983
984
985
986
987
988
989
                ctypes.c_int(num_iteration),
                c_str(self.pred_parameter),
                ctypes.byref(out_num_preds),
                preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
            if n_preds != out_num_preds.value:
                raise ValueError("Wrong length for predict results")
            return preds, nrow
wxchan's avatar
wxchan committed
990

991
        def inner_predict_sparse(csr, start_iteration, num_iteration, predict_type):
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
            ptr_indptr, type_ptr_indptr, __ = c_int_array(csr.indptr)
            ptr_data, type_ptr_data, _ = c_float_array(csr.data)
            csr_indices = csr.indices.astype(np.int32, copy=False)
            matrix_type = C_API_MATRIX_TYPE_CSR
            if type_ptr_indptr == C_API_DTYPE_INT32:
                out_ptr_indptr = ctypes.POINTER(ctypes.c_int32)()
            else:
                out_ptr_indptr = ctypes.POINTER(ctypes.c_int64)()
            out_ptr_indices = ctypes.POINTER(ctypes.c_int32)()
            if type_ptr_data == C_API_DTYPE_FLOAT32:
                out_ptr_data = ctypes.POINTER(ctypes.c_float)()
            else:
                out_ptr_data = ctypes.POINTER(ctypes.c_double)()
1005
            out_shape = np.empty(2, dtype=np.int64)
1006
1007
1008
            _safe_call(_LIB.LGBM_BoosterPredictSparseOutput(
                self.handle,
                ptr_indptr,
1009
                ctypes.c_int(type_ptr_indptr),
1010
1011
1012
1013
1014
1015
1016
                csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
                ptr_data,
                ctypes.c_int(type_ptr_data),
                ctypes.c_int64(len(csr.indptr)),
                ctypes.c_int64(len(csr.data)),
                ctypes.c_int64(csr.shape[1]),
                ctypes.c_int(predict_type),
1017
                ctypes.c_int(start_iteration),
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
                ctypes.c_int(num_iteration),
                c_str(self.pred_parameter),
                ctypes.c_int(matrix_type),
                out_shape.ctypes.data_as(ctypes.POINTER(ctypes.c_int64)),
                ctypes.byref(out_ptr_indptr),
                ctypes.byref(out_ptr_indices),
                ctypes.byref(out_ptr_data)))
            matrices = self.__create_sparse_native(csr, out_shape, out_ptr_indptr, out_ptr_indices, out_ptr_data,
                                                   type_ptr_indptr, type_ptr_data, is_csr=True)
            nrow = len(csr.indptr) - 1
            return matrices, nrow

        if predict_type == C_API_PREDICT_CONTRIB:
1031
            return inner_predict_sparse(csr, start_iteration, num_iteration, predict_type)
1032
1033
1034
1035
        nrow = len(csr.indptr) - 1
        if nrow > MAX_INT32:
            sections = [0] + list(np.arange(start=MAX_INT32, stop=nrow, step=MAX_INT32)) + [nrow]
            # __get_num_preds() cannot work with nrow > MAX_INT32, so calculate overall number of predictions piecemeal
1036
            n_preds = [self.__get_num_preds(start_iteration, num_iteration, i, predict_type) for i in np.diff(sections)]
1037
            n_preds_sections = np.array([0] + n_preds, dtype=np.intp).cumsum()
1038
            preds = np.empty(sum(n_preds), dtype=np.float64)
1039
1040
            for (start_idx, end_idx), (start_idx_pred, end_idx_pred) in zip(zip(sections, sections[1:]),
                                                                            zip(n_preds_sections, n_preds_sections[1:])):
1041
                # avoid memory consumption by arrays concatenation operations
1042
                inner_predict(csr[start_idx:end_idx], start_iteration, num_iteration, predict_type, preds[start_idx_pred:end_idx_pred])
1043
1044
            return preds, nrow
        else:
1045
            return inner_predict(csr, start_iteration, num_iteration, predict_type)
Guolin Ke's avatar
Guolin Ke committed
1046

1047
    def __pred_for_csc(self, csc, start_iteration, num_iteration, predict_type):
1048
        """Predict for a CSC data."""
1049
        def inner_predict_sparse(csc, start_iteration, num_iteration, predict_type):
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
            ptr_indptr, type_ptr_indptr, __ = c_int_array(csc.indptr)
            ptr_data, type_ptr_data, _ = c_float_array(csc.data)
            csc_indices = csc.indices.astype(np.int32, copy=False)
            matrix_type = C_API_MATRIX_TYPE_CSC
            if type_ptr_indptr == C_API_DTYPE_INT32:
                out_ptr_indptr = ctypes.POINTER(ctypes.c_int32)()
            else:
                out_ptr_indptr = ctypes.POINTER(ctypes.c_int64)()
            out_ptr_indices = ctypes.POINTER(ctypes.c_int32)()
            if type_ptr_data == C_API_DTYPE_FLOAT32:
                out_ptr_data = ctypes.POINTER(ctypes.c_float)()
            else:
                out_ptr_data = ctypes.POINTER(ctypes.c_double)()
1063
            out_shape = np.empty(2, dtype=np.int64)
1064
1065
1066
            _safe_call(_LIB.LGBM_BoosterPredictSparseOutput(
                self.handle,
                ptr_indptr,
1067
                ctypes.c_int(type_ptr_indptr),
1068
1069
1070
1071
1072
1073
1074
                csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
                ptr_data,
                ctypes.c_int(type_ptr_data),
                ctypes.c_int64(len(csc.indptr)),
                ctypes.c_int64(len(csc.data)),
                ctypes.c_int64(csc.shape[0]),
                ctypes.c_int(predict_type),
1075
                ctypes.c_int(start_iteration),
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
                ctypes.c_int(num_iteration),
                c_str(self.pred_parameter),
                ctypes.c_int(matrix_type),
                out_shape.ctypes.data_as(ctypes.POINTER(ctypes.c_int64)),
                ctypes.byref(out_ptr_indptr),
                ctypes.byref(out_ptr_indices),
                ctypes.byref(out_ptr_data)))
            matrices = self.__create_sparse_native(csc, out_shape, out_ptr_indptr, out_ptr_indices, out_ptr_data,
                                                   type_ptr_indptr, type_ptr_data, is_csr=False)
            nrow = csc.shape[0]
            return matrices, nrow

Guolin Ke's avatar
Guolin Ke committed
1088
        nrow = csc.shape[0]
1089
        if nrow > MAX_INT32:
1090
            return self.__pred_for_csr(csc.tocsr(), start_iteration, num_iteration, predict_type)
1091
        if predict_type == C_API_PREDICT_CONTRIB:
1092
1093
            return inner_predict_sparse(csc, start_iteration, num_iteration, predict_type)
        n_preds = self.__get_num_preds(start_iteration, num_iteration, nrow, predict_type)
1094
        preds = np.empty(n_preds, dtype=np.float64)
Guolin Ke's avatar
Guolin Ke committed
1095
1096
        out_num_preds = ctypes.c_int64(0)

1097
1098
        ptr_indptr, type_ptr_indptr, __ = c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = c_float_array(csc.data)
Guolin Ke's avatar
Guolin Ke committed
1099

1100
        assert csc.shape[0] <= MAX_INT32
1101
        csc_indices = csc.indices.astype(np.int32, copy=False)
1102

Guolin Ke's avatar
Guolin Ke committed
1103
1104
1105
        _safe_call(_LIB.LGBM_BoosterPredictForCSC(
            self.handle,
            ptr_indptr,
1106
            ctypes.c_int(type_ptr_indptr),
1107
            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
Guolin Ke's avatar
Guolin Ke committed
1108
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1109
1110
1111
1112
1113
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
            ctypes.c_int(predict_type),
1114
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
1115
            ctypes.c_int(num_iteration),
1116
            c_str(self.pred_parameter),
Guolin Ke's avatar
Guolin Ke committed
1117
            ctypes.byref(out_num_preds),
wxchan's avatar
wxchan committed
1118
            preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
wxchan's avatar
wxchan committed
1119
        if n_preds != out_num_preds.value:
1120
            raise ValueError("Wrong length for predict results")
wxchan's avatar
wxchan committed
1121
1122
        return preds, nrow

1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
    def current_iteration(self):
        """Get the index of the current iteration.

        Returns
        -------
        cur_iter : int
            The index of the current iteration.
        """
        out_cur_iter = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetCurrentIteration(
            self.handle,
            ctypes.byref(out_cur_iter)))
        return out_cur_iter.value

wxchan's avatar
wxchan committed
1137

1138
class Dataset:
wxchan's avatar
wxchan committed
1139
    """Dataset in LightGBM."""
1140

1141
    def __init__(self, data, label=None, reference=None,
1142
                 weight=None, group=None, init_score=None,
1143
                 feature_name='auto', categorical_feature='auto', params=None,
wxchan's avatar
wxchan committed
1144
                 free_raw_data=True):
1145
        """Initialize Dataset.
1146

wxchan's avatar
wxchan committed
1147
1148
        Parameters
        ----------
1149
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array
wxchan's avatar
wxchan committed
1150
            Data source of Dataset.
1151
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM) or a LightGBM Dataset binary file.
1152
        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None, optional (default=None)
1153
1154
1155
            Label of the data.
        reference : Dataset or None, optional (default=None)
            If this is Dataset for validation, training data should be used as reference.
1156
        weight : list, numpy 1-D array, pandas Series or None, optional (default=None)
1157
            Weight for each instance. Weights should be non-negative.
1158
        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
1159
1160
1161
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
1162
1163
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
1164
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None, optional (default=None)
1165
            Init score for Dataset.
1166
        feature_name : list of str, or 'auto', optional (default="auto")
1167
1168
            Feature names.
            If 'auto' and data is pandas DataFrame, data columns names are used.
1169
        categorical_feature : list of str or int, or 'auto', optional (default="auto")
1170
1171
            Categorical features.
            If list of int, interpreted as indices.
1172
            If list of str, interpreted as feature names (need to specify ``feature_name`` as well).
1173
            If 'auto' and data is pandas DataFrame, pandas unordered categorical columns are used.
1174
            All values in categorical features will be cast to int32 and thus should be less than int32 max value (2147483647).
1175
            Large values could be memory consuming. Consider using consecutive integers starting from zero.
1176
            All negative values in categorical features will be treated as missing values.
1177
            The output cannot be monotonically constrained with respect to a categorical feature.
1178
            Floating point numbers in categorical features will be rounded towards 0.
Nikita Titov's avatar
Nikita Titov committed
1179
        params : dict or None, optional (default=None)
1180
            Other parameters for Dataset.
Nikita Titov's avatar
Nikita Titov committed
1181
        free_raw_data : bool, optional (default=True)
1182
            If True, raw data is freed after constructing inner Dataset.
wxchan's avatar
wxchan committed
1183
        """
wxchan's avatar
wxchan committed
1184
1185
1186
1187
1188
1189
        self.handle = None
        self.data = data
        self.label = label
        self.reference = reference
        self.weight = weight
        self.group = group
1190
        self.init_score = init_score
wxchan's avatar
wxchan committed
1191
        self.feature_name = feature_name
1192
        self.categorical_feature = categorical_feature
1193
        self.params = deepcopy(params)
wxchan's avatar
wxchan committed
1194
1195
        self.free_raw_data = free_raw_data
        self.used_indices = None
1196
        self.need_slice = True
wxchan's avatar
wxchan committed
1197
        self._predictor = None
1198
        self.pandas_categorical = None
1199
        self.params_back_up = None
1200
1201
        self.feature_penalty = None
        self.monotone_constraints = None
1202
        self.version = 0
1203
        self._start_row = 0  # Used when pushing rows one by one.
wxchan's avatar
wxchan committed
1204
1205

    def __del__(self):
1206
1207
1208
1209
        try:
            self._free_handle()
        except AttributeError:
            pass
1210

1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
    def _create_sample_indices(self, total_nrow: int) -> np.ndarray:
        """Get an array of randomly chosen indices from this ``Dataset``.

        Indices are sampled without replacement.

        Parameters
        ----------
        total_nrow : int
            Total number of rows to sample from.
            If this value is greater than the value of parameter ``bin_construct_sample_cnt``, only ``bin_construct_sample_cnt`` indices will be used.
            If Dataset has multiple input data, this should be the sum of rows of every file.

        Returns
        -------
        indices : numpy array
            Indices for sampled data.
        """
        param_str = param_dict_to_str(self.get_params())
        sample_cnt = _get_sample_count(total_nrow, param_str)
        indices = np.empty(sample_cnt, dtype=np.int32)
        ptr_data, _, _ = c_int_array(indices)
        actual_sample_cnt = ctypes.c_int32(0)

        _safe_call(_LIB.LGBM_SampleIndices(
            ctypes.c_int32(total_nrow),
            c_str(param_str),
            ptr_data,
            ctypes.byref(actual_sample_cnt),
        ))
1240
1241
        assert sample_cnt == actual_sample_cnt.value
        return indices
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276

    def _init_from_ref_dataset(self, total_nrow: int, ref_dataset: 'Dataset') -> 'Dataset':
        """Create dataset from a reference dataset.

        Parameters
        ----------
        total_nrow : int
            Number of rows expected to add to dataset.
        ref_dataset : Dataset
            Reference dataset to extract meta from.

        Returns
        -------
        self : Dataset
            Constructed Dataset object.
        """
        self.handle = ctypes.c_void_p()
        _safe_call(_LIB.LGBM_DatasetCreateByReference(
            ref_dataset,
            ctypes.c_int64(total_nrow),
            ctypes.byref(self.handle),
        ))
        return self

    def _init_from_sample(
        self,
        sample_data: List[np.ndarray],
        sample_indices: List[np.ndarray],
        sample_cnt: int,
        total_nrow: int,
    ) -> "Dataset":
        """Create Dataset from sampled data structures.

        Parameters
        ----------
1277
        sample_data : list of numpy array
1278
            Sample data for each column.
1279
        sample_indices : list of numpy array
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
            Sample data row index for each column.
        sample_cnt : int
            Number of samples.
        total_nrow : int
            Total number of rows for all input files.

        Returns
        -------
        self : Dataset
            Constructed Dataset object.
        """
        ncol = len(sample_indices)
        assert len(sample_data) == ncol, "#sample data column != #column indices"

        for i in range(ncol):
            if sample_data[i].dtype != np.double:
                raise ValueError(f"sample_data[{i}] type {sample_data[i].dtype} is not double")
            if sample_indices[i].dtype != np.int32:
                raise ValueError(f"sample_indices[{i}] type {sample_indices[i].dtype} is not int32")

        # c type: double**
        # each double* element points to start of each column of sample data.
        sample_col_ptr = (ctypes.POINTER(ctypes.c_double) * ncol)()
        # c type int**
        # each int* points to start of indices for each column
        indices_col_ptr = (ctypes.POINTER(ctypes.c_int32) * ncol)()
        for i in range(ncol):
            sample_col_ptr[i] = c_float_array(sample_data[i])[0]
            indices_col_ptr[i] = c_int_array(sample_indices[i])[0]

        num_per_col = np.array([len(d) for d in sample_indices], dtype=np.int32)
        num_per_col_ptr, _, _ = c_int_array(num_per_col)

        self.handle = ctypes.c_void_p()
        params_str = param_dict_to_str(self.get_params())
        _safe_call(_LIB.LGBM_DatasetCreateFromSampledColumn(
            ctypes.cast(sample_col_ptr, ctypes.POINTER(ctypes.POINTER(ctypes.c_double))),
            ctypes.cast(indices_col_ptr, ctypes.POINTER(ctypes.POINTER(ctypes.c_int32))),
            ctypes.c_int32(ncol),
            num_per_col_ptr,
            ctypes.c_int32(sample_cnt),
            ctypes.c_int32(total_nrow),
            c_str(params_str),
            ctypes.byref(self.handle),
        ))
        return self

    def _push_rows(self, data: np.ndarray) -> 'Dataset':
        """Add rows to Dataset.

        Parameters
        ----------
        data : numpy 1-D array
            New data to add to the Dataset.

        Returns
        -------
        self : Dataset
            Dataset object.
        """
        nrow, ncol = data.shape
        data = data.reshape(data.size)
        data_ptr, data_type, _ = c_float_array(data)

        _safe_call(_LIB.LGBM_DatasetPushRows(
            self.handle,
            data_ptr,
            data_type,
            ctypes.c_int32(nrow),
            ctypes.c_int32(ncol),
            ctypes.c_int32(self._start_row),
        ))
        self._start_row += nrow
        return self

1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
    def get_params(self):
        """Get the used parameters in the Dataset.

        Returns
        -------
        params : dict or None
            The used parameters in this Dataset object.
        """
        if self.params is not None:
            # no min_data, nthreads and verbose in this function
            dataset_params = _ConfigAliases.get("bin_construct_sample_cnt",
                                                "categorical_feature",
                                                "data_random_seed",
                                                "enable_bundle",
                                                "feature_pre_filter",
                                                "forcedbins_filename",
                                                "group_column",
                                                "header",
                                                "ignore_column",
                                                "is_enable_sparse",
                                                "label_column",
1376
                                                "linear_tree",
1377
1378
1379
1380
                                                "max_bin",
                                                "max_bin_by_feature",
                                                "min_data_in_bin",
                                                "pre_partition",
Nikita Titov's avatar
Nikita Titov committed
1381
                                                "precise_float_parser",
1382
1383
1384
1385
1386
1387
                                                "two_round",
                                                "use_missing",
                                                "weight_column",
                                                "zero_as_missing")
            return {k: v for k, v in self.params.items() if k in dataset_params}

1388
    def _free_handle(self):
1389
        if self.handle is not None:
1390
            _safe_call(_LIB.LGBM_DatasetFree(self.handle))
1391
            self.handle = None
Guolin Ke's avatar
Guolin Ke committed
1392
1393
1394
        self.need_slice = True
        if self.used_indices is not None:
            self.data = None
Nikita Titov's avatar
Nikita Titov committed
1395
        return self
wxchan's avatar
wxchan committed
1396

Guolin Ke's avatar
Guolin Ke committed
1397
1398
    def _set_init_score_by_predictor(self, predictor, data, used_indices=None):
        data_has_header = False
1399
        if isinstance(data, (str, Path)):
Guolin Ke's avatar
Guolin Ke committed
1400
            # check data has header or not
1401
            data_has_header = any(self.params.get(alias, False) for alias in _ConfigAliases.get("header"))
Guolin Ke's avatar
Guolin Ke committed
1402
        num_data = self.num_data()
1403
1404
1405
1406
1407
1408
1409
        if predictor is not None:
            init_score = predictor.predict(data,
                                           raw_score=True,
                                           data_has_header=data_has_header,
                                           is_reshape=False)
            if used_indices is not None:
                assert not self.need_slice
1410
                if isinstance(data, (str, Path)):
1411
                    sub_init_score = np.empty(num_data * predictor.num_class, dtype=np.float64)
1412
                    assert num_data == len(used_indices)
1413
1414
                    for i in range(len(used_indices)):
                        for j in range(predictor.num_class):
1415
1416
1417
1418
                            sub_init_score[i * predictor.num_class + j] = init_score[used_indices[i] * predictor.num_class + j]
                    init_score = sub_init_score
            if predictor.num_class > 1:
                # need to regroup init_score
1419
                new_init_score = np.empty(init_score.size, dtype=np.float64)
1420
1421
                for i in range(num_data):
                    for j in range(predictor.num_class):
1422
1423
1424
                        new_init_score[j * num_data + i] = init_score[i * predictor.num_class + j]
                init_score = new_init_score
        elif self.init_score is not None:
1425
            init_score = np.zeros(self.init_score.shape, dtype=np.float64)
1426
1427
        else:
            return self
Guolin Ke's avatar
Guolin Ke committed
1428
1429
        self.set_init_score(init_score)

1430
    def _lazy_init(self, data, label=None, reference=None,
1431
                   weight=None, group=None, init_score=None, predictor=None,
1432
                   feature_name='auto', categorical_feature='auto', params=None):
wxchan's avatar
wxchan committed
1433
1434
        if data is None:
            self.handle = None
Nikita Titov's avatar
Nikita Titov committed
1435
            return self
Guolin Ke's avatar
Guolin Ke committed
1436
1437
1438
        if reference is not None:
            self.pandas_categorical = reference.pandas_categorical
            categorical_feature = reference.categorical_feature
1439
1440
1441
1442
        data, feature_name, categorical_feature, self.pandas_categorical = _data_from_pandas(data,
                                                                                             feature_name,
                                                                                             categorical_feature,
                                                                                             self.pandas_categorical)
wxchan's avatar
wxchan committed
1443
        label = _label_from_pandas(label)
Guolin Ke's avatar
Guolin Ke committed
1444

1445
        # process for args
wxchan's avatar
wxchan committed
1446
        params = {} if params is None else params
1447
1448
1449
        args_names = (getattr(self.__class__, '_lazy_init')
                      .__code__
                      .co_varnames[:getattr(self.__class__, '_lazy_init').__code__.co_argcount])
1450
        for key in params.keys():
1451
            if key in args_names:
1452
1453
                _log_warning(f'{key} keyword has been found in `params` and will be ignored.\n'
                             f'Please use {key} argument of the Dataset constructor to pass this parameter.')
1454
        # get categorical features
1455
1456
1457
1458
1459
1460
        if categorical_feature is not None:
            categorical_indices = set()
            feature_dict = {}
            if feature_name is not None:
                feature_dict = {name: i for i, name in enumerate(feature_name)}
            for name in categorical_feature:
1461
                if isinstance(name, str) and name in feature_dict:
1462
                    categorical_indices.add(feature_dict[name])
1463
                elif isinstance(name, int):
1464
1465
                    categorical_indices.add(name)
                else:
1466
                    raise TypeError(f"Wrong type({type(name).__name__}) or unknown name({name}) in categorical_feature")
1467
            if categorical_indices:
1468
1469
                for cat_alias in _ConfigAliases.get("categorical_feature"):
                    if cat_alias in params:
1470
1471
1472
                        # If the params[cat_alias] is equal to categorical_indices, do not report the warning.
                        if not(isinstance(params[cat_alias], list) and set(params[cat_alias]) == categorical_indices):
                            _log_warning(f'{cat_alias} in param dict is overridden.')
1473
                        params.pop(cat_alias, None)
1474
                params['categorical_column'] = sorted(categorical_indices)
1475

wxchan's avatar
wxchan committed
1476
        params_str = param_dict_to_str(params)
1477
        self.params = params
1478
        # process for reference dataset
wxchan's avatar
wxchan committed
1479
        ref_dataset = None
wxchan's avatar
wxchan committed
1480
        if isinstance(reference, Dataset):
1481
            ref_dataset = reference.construct().handle
wxchan's avatar
wxchan committed
1482
1483
        elif reference is not None:
            raise TypeError('Reference dataset should be None or dataset instance')
1484
        # start construct data
1485
        if isinstance(data, (str, Path)):
wxchan's avatar
wxchan committed
1486
1487
            self.handle = ctypes.c_void_p()
            _safe_call(_LIB.LGBM_DatasetCreateFromFile(
1488
                c_str(str(data)),
wxchan's avatar
wxchan committed
1489
1490
1491
1492
1493
                c_str(params_str),
                ref_dataset,
                ctypes.byref(self.handle)))
        elif isinstance(data, scipy.sparse.csr_matrix):
            self.__init_from_csr(data, params_str, ref_dataset)
Guolin Ke's avatar
Guolin Ke committed
1494
1495
        elif isinstance(data, scipy.sparse.csc_matrix):
            self.__init_from_csc(data, params_str, ref_dataset)
wxchan's avatar
wxchan committed
1496
1497
        elif isinstance(data, np.ndarray):
            self.__init_from_np2d(data, params_str, ref_dataset)
1498
1499
1500
1501
1502
1503
1504
1505
1506
        elif isinstance(data, list) and len(data) > 0:
            if all(isinstance(x, np.ndarray) for x in data):
                self.__init_from_list_np2d(data, params_str, ref_dataset)
            elif all(isinstance(x, Sequence) for x in data):
                self.__init_from_seqs(data, ref_dataset)
            else:
                raise TypeError('Data list can only be of ndarray or Sequence')
        elif isinstance(data, Sequence):
            self.__init_from_seqs([data], ref_dataset)
1507
        elif isinstance(data, dt_DataTable):
1508
            self.__init_from_np2d(data.to_numpy(), params_str, ref_dataset)
wxchan's avatar
wxchan committed
1509
1510
1511
1512
        else:
            try:
                csr = scipy.sparse.csr_matrix(data)
                self.__init_from_csr(csr, params_str, ref_dataset)
1513
            except BaseException:
1514
                raise TypeError(f'Cannot initialize Dataset from {type(data).__name__}')
wxchan's avatar
wxchan committed
1515
1516
1517
        if label is not None:
            self.set_label(label)
        if self.get_label() is None:
1518
            raise ValueError("Label should not be None")
wxchan's avatar
wxchan committed
1519
1520
1521
1522
        if weight is not None:
            self.set_weight(weight)
        if group is not None:
            self.set_group(group)
1523
1524
        if isinstance(predictor, _InnerPredictor):
            if self._predictor is None and init_score is not None:
1525
                _log_warning("The init_score will be overridden by the prediction of init_model.")
Guolin Ke's avatar
Guolin Ke committed
1526
            self._set_init_score_by_predictor(predictor, data)
1527
1528
        elif init_score is not None:
            self.set_init_score(init_score)
Guolin Ke's avatar
Guolin Ke committed
1529
        elif predictor is not None:
1530
            raise TypeError(f'Wrong predictor type {type(predictor).__name__}')
Guolin Ke's avatar
Guolin Ke committed
1531
        # set feature names
Nikita Titov's avatar
Nikita Titov committed
1532
        return self.set_feature_name(feature_name)
wxchan's avatar
wxchan committed
1533

1534
1535
    @staticmethod
    def _yield_row_from_seqlist(seqs: List[Sequence], indices: Iterable[int]):
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
        offset = 0
        seq_id = 0
        seq = seqs[seq_id]
        for row_id in indices:
            assert row_id >= offset, "sample indices are expected to be monotonic"
            while row_id >= offset + len(seq):
                offset += len(seq)
                seq_id += 1
                seq = seqs[seq_id]
            id_in_seq = row_id - offset
            row = seq[id_in_seq]
            yield row if row.flags['OWNDATA'] else row.copy()

    def __sample(self, seqs: List[Sequence], total_nrow: int) -> Tuple[List[np.ndarray], List[np.ndarray]]:
        """Sample data from seqs.

        Mimics behavior in c_api.cpp:LGBM_DatasetCreateFromMats()

        Returns
        -------
            sampled_rows, sampled_row_indices
        """
        indices = self._create_sample_indices(total_nrow)

        # Select sampled rows, transpose to column order.
1561
        sampled = np.array([row for row in self._yield_row_from_seqlist(seqs, indices)])
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
        sampled = sampled.T

        filtered = []
        filtered_idx = []
        sampled_row_range = np.arange(len(indices), dtype=np.int32)
        for col in sampled:
            col_predicate = (np.abs(col) > ZERO_THRESHOLD) | np.isnan(col)
            filtered_col = col[col_predicate]
            filtered_row_idx = sampled_row_range[col_predicate]

            filtered.append(filtered_col)
            filtered_idx.append(filtered_row_idx)

        return filtered, filtered_idx

    def __init_from_seqs(self, seqs: List[Sequence], ref_dataset: Optional['Dataset'] = None):
        """
        Initialize data from list of Sequence objects.

        Sequence: Generic Data Access Object
            Supports random access and access by batch if properly defined by user

        Data scheme uniformity are trusted, not checked
        """
        total_nrow = sum(len(seq) for seq in seqs)

        # create validation dataset from ref_dataset
        if ref_dataset is not None:
            self._init_from_ref_dataset(total_nrow, ref_dataset)
        else:
            param_str = param_dict_to_str(self.get_params())
            sample_cnt = _get_sample_count(total_nrow, param_str)

            sample_data, col_indices = self.__sample(seqs, total_nrow)
            self._init_from_sample(sample_data, col_indices, sample_cnt, total_nrow)

        for seq in seqs:
            nrow = len(seq)
            batch_size = getattr(seq, 'batch_size', None) or Sequence.batch_size
            for start in range(0, nrow, batch_size):
                end = min(start + batch_size, nrow)
                self._push_rows(seq[start:end])
        return self

wxchan's avatar
wxchan committed
1606
    def __init_from_np2d(self, mat, params_str, ref_dataset):
1607
        """Initialize data from a 2-D numpy matrix."""
wxchan's avatar
wxchan committed
1608
1609
1610
1611
1612
1613
        if len(mat.shape) != 2:
            raise ValueError('Input numpy.ndarray must be 2 dimensional')

        self.handle = ctypes.c_void_p()
        if mat.dtype == np.float32 or mat.dtype == np.float64:
            data = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
1614
        else:  # change non-float data to float data, need to copy
wxchan's avatar
wxchan committed
1615
1616
            data = np.array(mat.reshape(mat.size), dtype=np.float32)

1617
        ptr_data, type_ptr_data, _ = c_float_array(data)
wxchan's avatar
wxchan committed
1618
1619
        _safe_call(_LIB.LGBM_DatasetCreateFromMat(
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1620
            ctypes.c_int(type_ptr_data),
1621
1622
            ctypes.c_int32(mat.shape[0]),
            ctypes.c_int32(mat.shape[1]),
Guolin Ke's avatar
Guolin Ke committed
1623
            ctypes.c_int(C_API_IS_ROW_MAJOR),
wxchan's avatar
wxchan committed
1624
1625
1626
            c_str(params_str),
            ref_dataset,
            ctypes.byref(self.handle)))
Nikita Titov's avatar
Nikita Titov committed
1627
        return self
wxchan's avatar
wxchan committed
1628

1629
    def __init_from_list_np2d(self, mats, params_str, ref_dataset):
1630
        """Initialize data from a list of 2-D numpy matrices."""
1631
        ncol = mats[0].shape[1]
1632
        nrow = np.empty((len(mats),), np.int32)
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
        if mats[0].dtype == np.float64:
            ptr_data = (ctypes.POINTER(ctypes.c_double) * len(mats))()
        else:
            ptr_data = (ctypes.POINTER(ctypes.c_float) * len(mats))()

        holders = []
        type_ptr_data = None

        for i, mat in enumerate(mats):
            if len(mat.shape) != 2:
                raise ValueError('Input numpy.ndarray must be 2 dimensional')

            if mat.shape[1] != ncol:
                raise ValueError('Input arrays must have same number of columns')

            nrow[i] = mat.shape[0]

            if mat.dtype == np.float32 or mat.dtype == np.float64:
                mats[i] = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
1652
            else:  # change non-float data to float data, need to copy
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
                mats[i] = np.array(mat.reshape(mat.size), dtype=np.float32)

            chunk_ptr_data, chunk_type_ptr_data, holder = c_float_array(mats[i])
            if type_ptr_data is not None and chunk_type_ptr_data != type_ptr_data:
                raise ValueError('Input chunks must have same type')
            ptr_data[i] = chunk_ptr_data
            type_ptr_data = chunk_type_ptr_data
            holders.append(holder)

        self.handle = ctypes.c_void_p()
        _safe_call(_LIB.LGBM_DatasetCreateFromMats(
1664
            ctypes.c_int32(len(mats)),
1665
1666
1667
            ctypes.cast(ptr_data, ctypes.POINTER(ctypes.POINTER(ctypes.c_double))),
            ctypes.c_int(type_ptr_data),
            nrow.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
1668
            ctypes.c_int32(ncol),
1669
1670
1671
1672
            ctypes.c_int(C_API_IS_ROW_MAJOR),
            c_str(params_str),
            ref_dataset,
            ctypes.byref(self.handle)))
Nikita Titov's avatar
Nikita Titov committed
1673
        return self
1674

wxchan's avatar
wxchan committed
1675
    def __init_from_csr(self, csr, params_str, ref_dataset):
1676
        """Initialize data from a CSR matrix."""
wxchan's avatar
wxchan committed
1677
        if len(csr.indices) != len(csr.data):
1678
            raise ValueError(f'Length mismatch: {len(csr.indices)} vs {len(csr.data)}')
wxchan's avatar
wxchan committed
1679
1680
        self.handle = ctypes.c_void_p()

1681
1682
        ptr_indptr, type_ptr_indptr, __ = c_int_array(csr.indptr)
        ptr_data, type_ptr_data, _ = c_float_array(csr.data)
wxchan's avatar
wxchan committed
1683

1684
        assert csr.shape[1] <= MAX_INT32
1685
        csr_indices = csr.indices.astype(np.int32, copy=False)
1686

wxchan's avatar
wxchan committed
1687
1688
        _safe_call(_LIB.LGBM_DatasetCreateFromCSR(
            ptr_indptr,
Guolin Ke's avatar
Guolin Ke committed
1689
            ctypes.c_int(type_ptr_indptr),
1690
            csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
wxchan's avatar
wxchan committed
1691
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1692
1693
1694
1695
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csr.indptr)),
            ctypes.c_int64(len(csr.data)),
            ctypes.c_int64(csr.shape[1]),
wxchan's avatar
wxchan committed
1696
1697
1698
            c_str(params_str),
            ref_dataset,
            ctypes.byref(self.handle)))
Nikita Titov's avatar
Nikita Titov committed
1699
        return self
wxchan's avatar
wxchan committed
1700

Guolin Ke's avatar
Guolin Ke committed
1701
    def __init_from_csc(self, csc, params_str, ref_dataset):
1702
        """Initialize data from a CSC matrix."""
Guolin Ke's avatar
Guolin Ke committed
1703
        if len(csc.indices) != len(csc.data):
1704
            raise ValueError(f'Length mismatch: {len(csc.indices)} vs {len(csc.data)}')
Guolin Ke's avatar
Guolin Ke committed
1705
1706
        self.handle = ctypes.c_void_p()

1707
1708
        ptr_indptr, type_ptr_indptr, __ = c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = c_float_array(csc.data)
Guolin Ke's avatar
Guolin Ke committed
1709

1710
        assert csc.shape[0] <= MAX_INT32
1711
        csc_indices = csc.indices.astype(np.int32, copy=False)
1712

Guolin Ke's avatar
Guolin Ke committed
1713
1714
        _safe_call(_LIB.LGBM_DatasetCreateFromCSC(
            ptr_indptr,
Guolin Ke's avatar
Guolin Ke committed
1715
            ctypes.c_int(type_ptr_indptr),
1716
            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
Guolin Ke's avatar
Guolin Ke committed
1717
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1718
1719
1720
1721
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
Guolin Ke's avatar
Guolin Ke committed
1722
1723
1724
            c_str(params_str),
            ref_dataset,
            ctypes.byref(self.handle)))
Nikita Titov's avatar
Nikita Titov committed
1725
        return self
Guolin Ke's avatar
Guolin Ke committed
1726

1727
    @staticmethod
1728
1729
1730
1731
1732
1733
    def _compare_params_for_warning(
        params: Optional[Dict[str, Any]],
        other_params: Optional[Dict[str, Any]],
        ignore_keys: Set[str]
    ) -> bool:
        """Compare two dictionaries with params ignoring some keys.
1734

1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
        It is only for the warning purpose.

        Parameters
        ----------
        params : dict or None
            One dictionary with parameters to compare.
        other_params : dict or None
            Another dictionary with parameters to compare.
        ignore_keys : set
            Keys that should be ignored during comparing two dictionaries.
1745
1746
1747

        Returns
        -------
1748
1749
        compare_result : bool
          Returns whether two dictionaries with params are equal.
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
        """
        if params is None:
            params = {}
        if other_params is None:
            other_params = {}
        for k in other_params:
            if k not in ignore_keys:
                if k not in params or params[k] != other_params[k]:
                    return False
        for k in params:
            if k not in ignore_keys:
                if k not in other_params or params[k] != other_params[k]:
                    return False
        return True

wxchan's avatar
wxchan committed
1765
    def construct(self):
1766
1767
1768
1769
1770
        """Lazy init.

        Returns
        -------
        self : Dataset
Nikita Titov's avatar
Nikita Titov committed
1771
            Constructed Dataset object.
1772
        """
1773
        if self.handle is None:
wxchan's avatar
wxchan committed
1774
            if self.reference is not None:
1775
                reference_params = self.reference.get_params()
1776
1777
                params = self.get_params()
                if params != reference_params:
1778
1779
1780
1781
1782
                    if not self._compare_params_for_warning(
                        params=params,
                        other_params=reference_params,
                        ignore_keys=_ConfigAliases.get("categorical_feature")
                    ):
1783
                        _log_warning('Overriding the parameters from Reference Dataset.')
1784
                    self._update_params(reference_params)
wxchan's avatar
wxchan committed
1785
                if self.used_indices is None:
1786
                    # create valid
1787
                    self._lazy_init(self.data, label=self.label, reference=self.reference,
1788
1789
                                    weight=self.weight, group=self.group,
                                    init_score=self.init_score, predictor=self._predictor,
1790
                                    feature_name=self.feature_name, params=self.params)
wxchan's avatar
wxchan committed
1791
                else:
1792
                    # construct subset
wxchan's avatar
wxchan committed
1793
                    used_indices = list_to_1d_numpy(self.used_indices, np.int32, name='used_indices')
1794
                    assert used_indices.flags.c_contiguous
Guolin Ke's avatar
Guolin Ke committed
1795
                    if self.reference.group is not None:
1796
                        group_info = np.array(self.reference.group).astype(np.int32, copy=False)
1797
                        _, self.group = np.unique(np.repeat(range(len(group_info)), repeats=group_info)[self.used_indices],
1798
                                                  return_counts=True)
1799
                    self.handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
1800
1801
                    params_str = param_dict_to_str(self.params)
                    _safe_call(_LIB.LGBM_DatasetGetSubset(
1802
                        self.reference.construct().handle,
wxchan's avatar
wxchan committed
1803
                        used_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
1804
                        ctypes.c_int32(used_indices.shape[0]),
wxchan's avatar
wxchan committed
1805
1806
                        c_str(params_str),
                        ctypes.byref(self.handle)))
Guolin Ke's avatar
Guolin Ke committed
1807
1808
                    if not self.free_raw_data:
                        self.get_data()
Guolin Ke's avatar
Guolin Ke committed
1809
1810
                    if self.group is not None:
                        self.set_group(self.group)
wxchan's avatar
wxchan committed
1811
1812
                    if self.get_label() is None:
                        raise ValueError("Label should not be None.")
Guolin Ke's avatar
Guolin Ke committed
1813
1814
1815
                    if isinstance(self._predictor, _InnerPredictor) and self._predictor is not self.reference._predictor:
                        self.get_data()
                        self._set_init_score_by_predictor(self._predictor, self.data, used_indices)
wxchan's avatar
wxchan committed
1816
            else:
1817
                # create train
1818
                self._lazy_init(self.data, label=self.label,
1819
1820
                                weight=self.weight, group=self.group,
                                init_score=self.init_score, predictor=self._predictor,
1821
                                feature_name=self.feature_name, categorical_feature=self.categorical_feature, params=self.params)
wxchan's avatar
wxchan committed
1822
1823
1824
            if self.free_raw_data:
                self.data = None
        return self
wxchan's avatar
wxchan committed
1825

1826
    def create_valid(self, data, label=None, weight=None, group=None, init_score=None, params=None):
1827
        """Create validation data align with current Dataset.
wxchan's avatar
wxchan committed
1828
1829
1830

        Parameters
        ----------
1831
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array
wxchan's avatar
wxchan committed
1832
            Data source of Dataset.
1833
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM) or a LightGBM Dataset binary file.
1834
        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None, optional (default=None)
1835
1836
            Label of the data.
        weight : list, numpy 1-D array, pandas Series or None, optional (default=None)
1837
            Weight for each instance. Weights should be non-negative.
1838
        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
1839
1840
1841
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
1842
1843
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
1844
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None, optional (default=None)
1845
            Init score for Dataset.
Nikita Titov's avatar
Nikita Titov committed
1846
        params : dict or None, optional (default=None)
1847
            Other parameters for validation Dataset.
1848
1849
1850

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
1851
1852
        valid : Dataset
            Validation Dataset with reference to self.
wxchan's avatar
wxchan committed
1853
        """
1854
        ret = Dataset(data, label=label, reference=self,
1855
                      weight=weight, group=group, init_score=init_score,
1856
                      params=params, free_raw_data=self.free_raw_data)
wxchan's avatar
wxchan committed
1857
        ret._predictor = self._predictor
1858
        ret.pandas_categorical = self.pandas_categorical
wxchan's avatar
wxchan committed
1859
        return ret
wxchan's avatar
wxchan committed
1860

wxchan's avatar
wxchan committed
1861
    def subset(self, used_indices, params=None):
1862
        """Get subset of current Dataset.
wxchan's avatar
wxchan committed
1863
1864
1865
1866

        Parameters
        ----------
        used_indices : list of int
1867
            Indices used to create the subset.
Nikita Titov's avatar
Nikita Titov committed
1868
        params : dict or None, optional (default=None)
1869
            These parameters will be passed to Dataset constructor.
1870
1871
1872
1873
1874

        Returns
        -------
        subset : Dataset
            Subset of the current Dataset.
wxchan's avatar
wxchan committed
1875
        """
wxchan's avatar
wxchan committed
1876
1877
        if params is None:
            params = self.params
wxchan's avatar
wxchan committed
1878
        ret = Dataset(None, reference=self, feature_name=self.feature_name,
1879
1880
                      categorical_feature=self.categorical_feature, params=params,
                      free_raw_data=self.free_raw_data)
wxchan's avatar
wxchan committed
1881
        ret._predictor = self._predictor
1882
        ret.pandas_categorical = self.pandas_categorical
1883
        ret.used_indices = sorted(used_indices)
wxchan's avatar
wxchan committed
1884
1885
1886
        return ret

    def save_binary(self, filename):
1887
        """Save Dataset to a binary file.
wxchan's avatar
wxchan committed
1888

1889
1890
1891
1892
1893
        .. note::

            Please note that `init_score` is not saved in binary file.
            If you need it, please set it again after loading Dataset.

wxchan's avatar
wxchan committed
1894
1895
        Parameters
        ----------
1896
        filename : str or pathlib.Path
wxchan's avatar
wxchan committed
1897
            Name of the output file.
Nikita Titov's avatar
Nikita Titov committed
1898
1899
1900
1901
1902

        Returns
        -------
        self : Dataset
            Returns self.
wxchan's avatar
wxchan committed
1903
1904
1905
        """
        _safe_call(_LIB.LGBM_DatasetSaveBinary(
            self.construct().handle,
1906
            c_str(str(filename))))
Nikita Titov's avatar
Nikita Titov committed
1907
        return self
wxchan's avatar
wxchan committed
1908
1909

    def _update_params(self, params):
1910
1911
        if not params:
            return self
1912
        params = deepcopy(params)
1913
1914
1915
1916
1917

        def update():
            if not self.params:
                self.params = params
            else:
1918
                self.params_back_up = deepcopy(self.params)
1919
1920
1921
1922
1923
1924
1925
1926
1927
1928
1929
1930
1931
1932
                self.params.update(params)

        if self.handle is None:
            update()
        elif params is not None:
            ret = _LIB.LGBM_DatasetUpdateParamChecking(
                c_str(param_dict_to_str(self.params)),
                c_str(param_dict_to_str(params)))
            if ret != 0:
                # could be updated if data is not freed
                if self.data is not None:
                    update()
                    self._free_handle()
                else:
1933
                    raise LightGBMError(_LIB.LGBM_GetLastError().decode('utf-8'))
Nikita Titov's avatar
Nikita Titov committed
1934
        return self
wxchan's avatar
wxchan committed
1935

1936
    def _reverse_update_params(self):
1937
        if self.handle is None:
1938
            self.params = deepcopy(self.params_back_up)
1939
            self.params_back_up = None
Nikita Titov's avatar
Nikita Titov committed
1940
        return self
1941

wxchan's avatar
wxchan committed
1942
    def set_field(self, field_name, data):
wxchan's avatar
wxchan committed
1943
        """Set property into the Dataset.
wxchan's avatar
wxchan committed
1944
1945
1946

        Parameters
        ----------
1947
        field_name : str
1948
            The field name of the information.
1949
1950
        data : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None
            The data to be set.
Nikita Titov's avatar
Nikita Titov committed
1951
1952
1953
1954
1955

        Returns
        -------
        self : Dataset
            Dataset with set property.
wxchan's avatar
wxchan committed
1956
        """
1957
        if self.handle is None:
1958
            raise Exception(f"Cannot set {field_name} before construct dataset")
wxchan's avatar
wxchan committed
1959
        if data is None:
1960
            # set to None
wxchan's avatar
wxchan committed
1961
1962
1963
1964
            _safe_call(_LIB.LGBM_DatasetSetField(
                self.handle,
                c_str(field_name),
                None,
Guolin Ke's avatar
Guolin Ke committed
1965
1966
                ctypes.c_int(0),
                ctypes.c_int(FIELD_TYPE_MAPPER[field_name])))
Nikita Titov's avatar
Nikita Titov committed
1967
            return self
1968
        if field_name == 'init_score':
Guolin Ke's avatar
Guolin Ke committed
1969
            dtype = np.float64
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
1982
1983
            if _is_1d_collection(data):
                data = list_to_1d_numpy(data, dtype, name=field_name)
            elif _is_2d_collection(data):
                data = _data_to_2d_numpy(data, dtype, name=field_name)
                data = data.ravel(order='F')
            else:
                raise TypeError(
                    'init_score must be list, numpy 1-D array or pandas Series.\n'
                    'In multiclass classification init_score can also be a list of lists, numpy 2-D array or pandas DataFrame.'
                )
        else:
            dtype = np.int32 if field_name == 'group' else np.float32
            data = list_to_1d_numpy(data, dtype, name=field_name)

1984
1985
        if data.dtype == np.float32 or data.dtype == np.float64:
            ptr_data, type_data, _ = c_float_array(data)
wxchan's avatar
wxchan committed
1986
        elif data.dtype == np.int32:
1987
            ptr_data, type_data, _ = c_int_array(data)
wxchan's avatar
wxchan committed
1988
        else:
1989
            raise TypeError(f"Expected np.float32/64 or np.int32, met type({data.dtype})")
wxchan's avatar
wxchan committed
1990
        if type_data != FIELD_TYPE_MAPPER[field_name]:
1991
            raise TypeError("Input type error for set_field")
wxchan's avatar
wxchan committed
1992
1993
1994
1995
        _safe_call(_LIB.LGBM_DatasetSetField(
            self.handle,
            c_str(field_name),
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1996
1997
            ctypes.c_int(len(data)),
            ctypes.c_int(type_data)))
1998
        self.version += 1
Nikita Titov's avatar
Nikita Titov committed
1999
        return self
wxchan's avatar
wxchan committed
2000

wxchan's avatar
wxchan committed
2001
2002
    def get_field(self, field_name):
        """Get property from the Dataset.
wxchan's avatar
wxchan committed
2003
2004
2005

        Parameters
        ----------
2006
        field_name : str
2007
            The field name of the information.
wxchan's avatar
wxchan committed
2008
2009
2010

        Returns
        -------
2011
        info : numpy array or None
2012
            A numpy array with information from the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2013
        """
2014
        if self.handle is None:
2015
            raise Exception(f"Cannot get {field_name} before construct Dataset")
2016
2017
        tmp_out_len = ctypes.c_int(0)
        out_type = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2018
2019
2020
2021
2022
2023
2024
2025
2026
2027
2028
2029
        ret = ctypes.POINTER(ctypes.c_void_p)()
        _safe_call(_LIB.LGBM_DatasetGetField(
            self.handle,
            c_str(field_name),
            ctypes.byref(tmp_out_len),
            ctypes.byref(ret),
            ctypes.byref(out_type)))
        if out_type.value != FIELD_TYPE_MAPPER[field_name]:
            raise TypeError("Return type error for get_field")
        if tmp_out_len.value == 0:
            return None
        if out_type.value == C_API_DTYPE_INT32:
2030
            arr = cint32_array_to_numpy(ctypes.cast(ret, ctypes.POINTER(ctypes.c_int32)), tmp_out_len.value)
wxchan's avatar
wxchan committed
2031
        elif out_type.value == C_API_DTYPE_FLOAT32:
2032
            arr = cfloat32_array_to_numpy(ctypes.cast(ret, ctypes.POINTER(ctypes.c_float)), tmp_out_len.value)
Guolin Ke's avatar
Guolin Ke committed
2033
        elif out_type.value == C_API_DTYPE_FLOAT64:
2034
            arr = cfloat64_array_to_numpy(ctypes.cast(ret, ctypes.POINTER(ctypes.c_double)), tmp_out_len.value)
2035
        else:
wxchan's avatar
wxchan committed
2036
            raise TypeError("Unknown type")
2037
2038
2039
2040
2041
2042
        if field_name == 'init_score':
            num_data = self.num_data()
            num_classes = arr.size // num_data
            if num_classes > 1:
                arr = arr.reshape((num_data, num_classes), order='F')
        return arr
Guolin Ke's avatar
Guolin Ke committed
2043

2044
    def set_categorical_feature(self, categorical_feature):
2045
        """Set categorical features.
2046
2047
2048

        Parameters
        ----------
2049
        categorical_feature : list of int or str
2050
            Names or indices of categorical features.
Nikita Titov's avatar
Nikita Titov committed
2051
2052
2053
2054
2055

        Returns
        -------
        self : Dataset
            Dataset with set categorical features.
2056
2057
        """
        if self.categorical_feature == categorical_feature:
Nikita Titov's avatar
Nikita Titov committed
2058
            return self
2059
        if self.data is not None:
2060
2061
            if self.categorical_feature is None:
                self.categorical_feature = categorical_feature
Nikita Titov's avatar
Nikita Titov committed
2062
                return self._free_handle()
2063
            elif categorical_feature == 'auto':
Nikita Titov's avatar
Nikita Titov committed
2064
                return self
2065
            else:
2066
2067
2068
                if self.categorical_feature != 'auto':
                    _log_warning('categorical_feature in Dataset is overridden.\n'
                                 f'New categorical_feature is {sorted(list(categorical_feature))}')
2069
                self.categorical_feature = categorical_feature
Nikita Titov's avatar
Nikita Titov committed
2070
                return self._free_handle()
2071
        else:
2072
2073
            raise LightGBMError("Cannot set categorical feature after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
2074

Guolin Ke's avatar
Guolin Ke committed
2075
    def _set_predictor(self, predictor):
2076
2077
2078
2079
        """Set predictor for continued training.

        It is not recommended for user to call this function.
        Please use init_model argument in engine.train() or engine.cv() instead.
Guolin Ke's avatar
Guolin Ke committed
2080
        """
2081
        if predictor is self._predictor and (predictor is None or predictor.current_iteration() == self._predictor.current_iteration()):
Nikita Titov's avatar
Nikita Titov committed
2082
            return self
2083
        if self.handle is None:
Guolin Ke's avatar
Guolin Ke committed
2084
            self._predictor = predictor
2085
2086
2087
2088
2089
2090
        elif self.data is not None:
            self._predictor = predictor
            self._set_init_score_by_predictor(self._predictor, self.data)
        elif self.used_indices is not None and self.reference is not None and self.reference.data is not None:
            self._predictor = predictor
            self._set_init_score_by_predictor(self._predictor, self.reference.data, self.used_indices)
Guolin Ke's avatar
Guolin Ke committed
2091
        else:
2092
2093
            raise LightGBMError("Cannot set predictor after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
2094
        return self
Guolin Ke's avatar
Guolin Ke committed
2095
2096

    def set_reference(self, reference):
2097
        """Set reference Dataset.
Guolin Ke's avatar
Guolin Ke committed
2098
2099
2100
2101

        Parameters
        ----------
        reference : Dataset
2102
            Reference that is used as a template to construct the current Dataset.
Nikita Titov's avatar
Nikita Titov committed
2103
2104
2105
2106
2107

        Returns
        -------
        self : Dataset
            Dataset with set reference.
Guolin Ke's avatar
Guolin Ke committed
2108
        """
2109
2110
2111
        self.set_categorical_feature(reference.categorical_feature) \
            .set_feature_name(reference.feature_name) \
            ._set_predictor(reference._predictor)
2112
        # we're done if self and reference share a common upstream reference
2113
        if self.get_ref_chain().intersection(reference.get_ref_chain()):
Nikita Titov's avatar
Nikita Titov committed
2114
            return self
Guolin Ke's avatar
Guolin Ke committed
2115
2116
        if self.data is not None:
            self.reference = reference
Nikita Titov's avatar
Nikita Titov committed
2117
            return self._free_handle()
Guolin Ke's avatar
Guolin Ke committed
2118
        else:
2119
2120
            raise LightGBMError("Cannot set reference after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
Guolin Ke's avatar
Guolin Ke committed
2121
2122

    def set_feature_name(self, feature_name):
2123
        """Set feature name.
Guolin Ke's avatar
Guolin Ke committed
2124
2125
2126

        Parameters
        ----------
2127
        feature_name : list of str
2128
            Feature names.
Nikita Titov's avatar
Nikita Titov committed
2129
2130
2131
2132
2133

        Returns
        -------
        self : Dataset
            Dataset with set feature name.
Guolin Ke's avatar
Guolin Ke committed
2134
        """
2135
2136
        if feature_name != 'auto':
            self.feature_name = feature_name
2137
        if self.handle is not None and feature_name is not None and feature_name != 'auto':
wxchan's avatar
wxchan committed
2138
            if len(feature_name) != self.num_feature():
2139
                raise ValueError(f"Length of feature_name({len(feature_name)}) and num_feature({self.num_feature()}) don't match")
2140
            c_feature_name = [c_str(name) for name in feature_name]
wxchan's avatar
wxchan committed
2141
2142
2143
            _safe_call(_LIB.LGBM_DatasetSetFeatureNames(
                self.handle,
                c_array(ctypes.c_char_p, c_feature_name),
Guolin Ke's avatar
Guolin Ke committed
2144
                ctypes.c_int(len(feature_name))))
Nikita Titov's avatar
Nikita Titov committed
2145
        return self
Guolin Ke's avatar
Guolin Ke committed
2146
2147

    def set_label(self, label):
2148
        """Set label of Dataset.
Guolin Ke's avatar
Guolin Ke committed
2149
2150
2151

        Parameters
        ----------
2152
        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None
2153
            The label information to be set into Dataset.
Nikita Titov's avatar
Nikita Titov committed
2154
2155
2156
2157
2158

        Returns
        -------
        self : Dataset
            Dataset with set label.
Guolin Ke's avatar
Guolin Ke committed
2159
2160
        """
        self.label = label
2161
        if self.handle is not None:
2162
            label = list_to_1d_numpy(_label_from_pandas(label), name='label')
wxchan's avatar
wxchan committed
2163
            self.set_field('label', label)
2164
            self.label = self.get_field('label')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
2165
        return self
Guolin Ke's avatar
Guolin Ke committed
2166
2167

    def set_weight(self, weight):
2168
        """Set weight of each instance.
Guolin Ke's avatar
Guolin Ke committed
2169
2170
2171

        Parameters
        ----------
2172
        weight : list, numpy 1-D array, pandas Series or None
2173
            Weight to be set for each data point. Weights should be non-negative.
Nikita Titov's avatar
Nikita Titov committed
2174
2175
2176
2177
2178

        Returns
        -------
        self : Dataset
            Dataset with set weight.
Guolin Ke's avatar
Guolin Ke committed
2179
        """
2180
2181
        if weight is not None and np.all(weight == 1):
            weight = None
Guolin Ke's avatar
Guolin Ke committed
2182
        self.weight = weight
2183
        if self.handle is not None and weight is not None:
wxchan's avatar
wxchan committed
2184
2185
            weight = list_to_1d_numpy(weight, name='weight')
            self.set_field('weight', weight)
2186
            self.weight = self.get_field('weight')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
2187
        return self
Guolin Ke's avatar
Guolin Ke committed
2188
2189

    def set_init_score(self, init_score):
2190
        """Set init score of Booster to start from.
Guolin Ke's avatar
Guolin Ke committed
2191
2192
2193

        Parameters
        ----------
2194
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None
2195
            Init score for Booster.
Nikita Titov's avatar
Nikita Titov committed
2196
2197
2198
2199
2200

        Returns
        -------
        self : Dataset
            Dataset with set init score.
Guolin Ke's avatar
Guolin Ke committed
2201
2202
        """
        self.init_score = init_score
2203
        if self.handle is not None and init_score is not None:
wxchan's avatar
wxchan committed
2204
            self.set_field('init_score', init_score)
2205
            self.init_score = self.get_field('init_score')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
2206
        return self
Guolin Ke's avatar
Guolin Ke committed
2207
2208

    def set_group(self, group):
2209
        """Set group size of Dataset (used for ranking).
Guolin Ke's avatar
Guolin Ke committed
2210
2211
2212

        Parameters
        ----------
2213
        group : list, numpy 1-D array, pandas Series or None
2214
2215
2216
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
2217
2218
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
Nikita Titov's avatar
Nikita Titov committed
2219
2220
2221
2222
2223

        Returns
        -------
        self : Dataset
            Dataset with set group.
Guolin Ke's avatar
Guolin Ke committed
2224
2225
        """
        self.group = group
2226
        if self.handle is not None and group is not None:
wxchan's avatar
wxchan committed
2227
2228
            group = list_to_1d_numpy(group, np.int32, name='group')
            self.set_field('group', group)
Nikita Titov's avatar
Nikita Titov committed
2229
        return self
Guolin Ke's avatar
Guolin Ke committed
2230

2231
2232
2233
2234
2235
    def get_feature_name(self):
        """Get the names of columns (features) in the Dataset.

        Returns
        -------
2236
        feature_names : list of str
2237
2238
2239
2240
2241
2242
2243
2244
            The names of columns (features) in the Dataset.
        """
        if self.handle is None:
            raise LightGBMError("Cannot get feature_name before construct dataset")
        num_feature = self.num_feature()
        tmp_out_len = ctypes.c_int(0)
        reserved_string_buffer_size = 255
        required_string_buffer_size = ctypes.c_size_t(0)
2245
        string_buffers = [ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(num_feature)]
2246
2247
2248
        ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
        _safe_call(_LIB.LGBM_DatasetGetFeatureNames(
            self.handle,
2249
            ctypes.c_int(num_feature),
2250
            ctypes.byref(tmp_out_len),
2251
            ctypes.c_size_t(reserved_string_buffer_size),
2252
2253
2254
2255
            ctypes.byref(required_string_buffer_size),
            ptr_string_buffers))
        if num_feature != tmp_out_len.value:
            raise ValueError("Length of feature names doesn't equal with num_feature")
2256
2257
2258
2259
2260
2261
2262
2263
2264
2265
2266
2267
        actual_string_buffer_size = required_string_buffer_size.value
        # if buffer length is not long enough, reallocate buffers
        if reserved_string_buffer_size < actual_string_buffer_size:
            string_buffers = [ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(num_feature)]
            ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
            _safe_call(_LIB.LGBM_DatasetGetFeatureNames(
                self.handle,
                ctypes.c_int(num_feature),
                ctypes.byref(tmp_out_len),
                ctypes.c_size_t(actual_string_buffer_size),
                ctypes.byref(required_string_buffer_size),
                ptr_string_buffers))
2268
        return [string_buffers[i].value.decode('utf-8') for i in range(num_feature)]
2269

Guolin Ke's avatar
Guolin Ke committed
2270
    def get_label(self):
2271
        """Get the label of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2272
2273
2274

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2275
        label : numpy array or None
2276
            The label information from the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2277
        """
2278
        if self.label is None:
wxchan's avatar
wxchan committed
2279
            self.label = self.get_field('label')
Guolin Ke's avatar
Guolin Ke committed
2280
2281
2282
        return self.label

    def get_weight(self):
2283
        """Get the weight of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2284
2285
2286

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2287
        weight : numpy array or None
2288
            Weight for each data point from the Dataset. Weights should be non-negative.
Guolin Ke's avatar
Guolin Ke committed
2289
        """
2290
        if self.weight is None:
wxchan's avatar
wxchan committed
2291
            self.weight = self.get_field('weight')
Guolin Ke's avatar
Guolin Ke committed
2292
2293
2294
        return self.weight

    def get_init_score(self):
2295
        """Get the initial score of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2296
2297
2298

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2299
        init_score : numpy array or None
2300
            Init score of Booster.
Guolin Ke's avatar
Guolin Ke committed
2301
        """
2302
        if self.init_score is None:
wxchan's avatar
wxchan committed
2303
            self.init_score = self.get_field('init_score')
Guolin Ke's avatar
Guolin Ke committed
2304
2305
        return self.init_score

2306
2307
2308
2309
2310
    def get_data(self):
        """Get the raw data of the Dataset.

        Returns
        -------
2311
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array or None
2312
2313
2314
2315
            Raw data used in the Dataset construction.
        """
        if self.handle is None:
            raise Exception("Cannot get data before construct Dataset")
Guolin Ke's avatar
Guolin Ke committed
2316
2317
2318
2319
2320
        if self.need_slice and self.used_indices is not None and self.reference is not None:
            self.data = self.reference.data
            if self.data is not None:
                if isinstance(self.data, np.ndarray) or scipy.sparse.issparse(self.data):
                    self.data = self.data[self.used_indices, :]
2321
                elif isinstance(self.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2322
                    self.data = self.data.iloc[self.used_indices].copy()
2323
                elif isinstance(self.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
2324
                    self.data = self.data[self.used_indices, :]
2325
2326
2327
2328
                elif isinstance(self.data, Sequence):
                    self.data = self.data[self.used_indices]
                elif isinstance(self.data, list) and len(self.data) > 0 and all(isinstance(x, Sequence) for x in self.data):
                    self.data = np.array([row for row in self._yield_row_from_seqlist(self.data, self.used_indices)])
Guolin Ke's avatar
Guolin Ke committed
2329
                else:
2330
2331
                    _log_warning(f"Cannot subset {type(self.data).__name__} type of raw data.\n"
                                 "Returning original raw data")
2332
            self.need_slice = False
Guolin Ke's avatar
Guolin Ke committed
2333
2334
2335
        if self.data is None:
            raise LightGBMError("Cannot call `get_data` after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
2336
2337
        return self.data

Guolin Ke's avatar
Guolin Ke committed
2338
    def get_group(self):
2339
        """Get the group of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2340
2341
2342

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2343
        group : numpy array or None
2344
2345
2346
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
2347
2348
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
Guolin Ke's avatar
Guolin Ke committed
2349
        """
2350
        if self.group is None:
wxchan's avatar
wxchan committed
2351
            self.group = self.get_field('group')
Guolin Ke's avatar
Guolin Ke committed
2352
2353
            if self.group is not None:
                # group data from LightGBM is boundaries data, need to convert to group size
Nikita Titov's avatar
Nikita Titov committed
2354
                self.group = np.diff(self.group)
Guolin Ke's avatar
Guolin Ke committed
2355
2356
2357
        return self.group

    def num_data(self):
2358
        """Get the number of rows in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2359
2360
2361

        Returns
        -------
2362
2363
        number_of_rows : int
            The number of rows in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2364
        """
2365
        if self.handle is not None:
2366
            ret = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2367
2368
2369
            _safe_call(_LIB.LGBM_DatasetGetNumData(self.handle,
                                                   ctypes.byref(ret)))
            return ret.value
Guolin Ke's avatar
Guolin Ke committed
2370
        else:
2371
            raise LightGBMError("Cannot get num_data before construct dataset")
Guolin Ke's avatar
Guolin Ke committed
2372
2373

    def num_feature(self):
2374
        """Get the number of columns (features) in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2375
2376
2377

        Returns
        -------
2378
2379
        number_of_columns : int
            The number of columns (features) in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2380
        """
2381
        if self.handle is not None:
2382
            ret = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2383
2384
2385
            _safe_call(_LIB.LGBM_DatasetGetNumFeature(self.handle,
                                                      ctypes.byref(ret)))
            return ret.value
Guolin Ke's avatar
Guolin Ke committed
2386
        else:
2387
            raise LightGBMError("Cannot get num_feature before construct dataset")
Guolin Ke's avatar
Guolin Ke committed
2388

2389
2390
2391
2392
2393
2394
2395
2396
2397
2398
2399
2400
2401
2402
2403
2404
2405
2406
2407
2408
2409
2410
    def feature_num_bin(self, feature: int) -> int:
        """Get the number of bins for a feature.

        Parameters
        ----------
        feature : int
            Index of the feature.

        Returns
        -------
        number_of_bins : int
            The number of constructed bins for the feature in the Dataset.
        """
        if self.handle is not None:
            ret = ctypes.c_int(0)
            _safe_call(_LIB.LGBM_DatasetGetFeatureNumBin(self.handle,
                                                         ctypes.c_int(feature),
                                                         ctypes.byref(ret)))
            return ret.value
        else:
            raise LightGBMError("Cannot get feature_num_bin before construct dataset")

2411
    def get_ref_chain(self, ref_limit=100):
2412
2413
2414
2415
2416
        """Get a chain of Dataset objects.

        Starts with r, then goes to r.reference (if exists),
        then to r.reference.reference, etc.
        until we hit ``ref_limit`` or a reference loop.
2417
2418
2419
2420
2421

        Parameters
        ----------
        ref_limit : int, optional (default=100)
            The limit number of references.
2422
2423
2424

        Returns
        -------
2425
2426
2427
        ref_chain : set of Dataset
            Chain of references of the Datasets.
        """
2428
        head = self
2429
        ref_chain = set()
2430
2431
        while len(ref_chain) < ref_limit:
            if isinstance(head, Dataset):
2432
                ref_chain.add(head)
2433
2434
2435
2436
2437
2438
                if (head.reference is not None) and (head.reference not in ref_chain):
                    head = head.reference
                else:
                    break
            else:
                break
Nikita Titov's avatar
Nikita Titov committed
2439
        return ref_chain
2440

2441
2442
2443
2444
2445
2446
2447
2448
2449
2450
2451
2452
2453
2454
2455
2456
2457
2458
    def add_features_from(self, other):
        """Add features from other Dataset to the current Dataset.

        Both Datasets must be constructed before calling this method.

        Parameters
        ----------
        other : Dataset
            The Dataset to take features from.

        Returns
        -------
        self : Dataset
            Dataset with the new features added.
        """
        if self.handle is None or other.handle is None:
            raise ValueError('Both source and target Datasets must be constructed before adding features')
        _safe_call(_LIB.LGBM_DatasetAddFeaturesFrom(self.handle, other.handle))
Guolin Ke's avatar
Guolin Ke committed
2459
2460
2461
2462
2463
2464
2465
2466
2467
2468
        was_none = self.data is None
        old_self_data_type = type(self.data).__name__
        if other.data is None:
            self.data = None
        elif self.data is not None:
            if isinstance(self.data, np.ndarray):
                if isinstance(other.data, np.ndarray):
                    self.data = np.hstack((self.data, other.data))
                elif scipy.sparse.issparse(other.data):
                    self.data = np.hstack((self.data, other.data.toarray()))
2469
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2470
                    self.data = np.hstack((self.data, other.data.values))
2471
                elif isinstance(other.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
2472
2473
2474
2475
2476
2477
2478
                    self.data = np.hstack((self.data, other.data.to_numpy()))
                else:
                    self.data = None
            elif scipy.sparse.issparse(self.data):
                sparse_format = self.data.getformat()
                if isinstance(other.data, np.ndarray) or scipy.sparse.issparse(other.data):
                    self.data = scipy.sparse.hstack((self.data, other.data), format=sparse_format)
2479
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2480
                    self.data = scipy.sparse.hstack((self.data, other.data.values), format=sparse_format)
2481
                elif isinstance(other.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
2482
2483
2484
                    self.data = scipy.sparse.hstack((self.data, other.data.to_numpy()), format=sparse_format)
                else:
                    self.data = None
2485
            elif isinstance(self.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2486
2487
                if not PANDAS_INSTALLED:
                    raise LightGBMError("Cannot add features to DataFrame type of raw data "
2488
2489
                                        "without pandas installed. "
                                        "Install pandas and restart your session.")
Guolin Ke's avatar
Guolin Ke committed
2490
                if isinstance(other.data, np.ndarray):
2491
                    self.data = concat((self.data, pd_DataFrame(other.data)),
Guolin Ke's avatar
Guolin Ke committed
2492
2493
                                       axis=1, ignore_index=True)
                elif scipy.sparse.issparse(other.data):
2494
                    self.data = concat((self.data, pd_DataFrame(other.data.toarray())),
Guolin Ke's avatar
Guolin Ke committed
2495
                                       axis=1, ignore_index=True)
2496
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2497
2498
                    self.data = concat((self.data, other.data),
                                       axis=1, ignore_index=True)
2499
2500
                elif isinstance(other.data, dt_DataTable):
                    self.data = concat((self.data, pd_DataFrame(other.data.to_numpy())),
Guolin Ke's avatar
Guolin Ke committed
2501
2502
2503
                                       axis=1, ignore_index=True)
                else:
                    self.data = None
2504
            elif isinstance(self.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
2505
                if isinstance(other.data, np.ndarray):
2506
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data)))
Guolin Ke's avatar
Guolin Ke committed
2507
                elif scipy.sparse.issparse(other.data):
2508
2509
2510
2511
2512
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.toarray())))
                elif isinstance(other.data, pd_DataFrame):
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.values)))
                elif isinstance(other.data, dt_DataTable):
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.to_numpy())))
Guolin Ke's avatar
Guolin Ke committed
2513
2514
2515
2516
2517
                else:
                    self.data = None
            else:
                self.data = None
        if self.data is None:
2518
2519
            err_msg = (f"Cannot add features from {type(other.data).__name__} type of raw data to "
                       f"{old_self_data_type} type of raw data.\n")
Guolin Ke's avatar
Guolin Ke committed
2520
2521
            err_msg += ("Set free_raw_data=False when construct Dataset to avoid this"
                        if was_none else "Freeing raw data")
2522
            _log_warning(err_msg)
Guolin Ke's avatar
Guolin Ke committed
2523
        self.feature_name = self.get_feature_name()
2524
2525
        _log_warning("Reseting categorical features.\n"
                     "You can set new categorical features via ``set_categorical_feature`` method")
Guolin Ke's avatar
Guolin Ke committed
2526
2527
        self.categorical_feature = "auto"
        self.pandas_categorical = None
2528
2529
        return self

2530
    def _dump_text(self, filename):
2531
2532
2533
2534
2535
2536
        """Save Dataset to a text file.

        This format cannot be loaded back in by LightGBM, but is useful for debugging purposes.

        Parameters
        ----------
2537
        filename : str or pathlib.Path
2538
2539
2540
2541
2542
2543
2544
2545
2546
            Name of the output file.

        Returns
        -------
        self : Dataset
            Returns self.
        """
        _safe_call(_LIB.LGBM_DatasetDumpText(
            self.construct().handle,
2547
            c_str(str(filename))))
2548
2549
        return self

wxchan's avatar
wxchan committed
2550

2551
class Booster:
2552
    """Booster in LightGBM."""
2553

2554
    def __init__(self, params=None, train_set=None, model_file=None, model_str=None):
2555
        """Initialize the Booster.
wxchan's avatar
wxchan committed
2556
2557
2558

        Parameters
        ----------
Nikita Titov's avatar
Nikita Titov committed
2559
        params : dict or None, optional (default=None)
2560
2561
2562
            Parameters for Booster.
        train_set : Dataset or None, optional (default=None)
            Training dataset.
2563
        model_file : str, pathlib.Path or None, optional (default=None)
wxchan's avatar
wxchan committed
2564
            Path to the model file.
2565
        model_str : str or None, optional (default=None)
2566
            Model will be loaded from this string.
wxchan's avatar
wxchan committed
2567
        """
2568
        self.handle = None
2569
        self.network = False
wxchan's avatar
wxchan committed
2570
        self.__need_reload_eval_info = True
2571
        self._train_data_name = "training"
wxchan's avatar
wxchan committed
2572
        self.__attr = {}
2573
        self.__set_objective_to_none = False
wxchan's avatar
wxchan committed
2574
        self.best_iteration = -1
wxchan's avatar
wxchan committed
2575
        self.best_score = {}
2576
        params = {} if params is None else deepcopy(params)
wxchan's avatar
wxchan committed
2577
        if train_set is not None:
2578
            # Training task
wxchan's avatar
wxchan committed
2579
            if not isinstance(train_set, Dataset):
2580
                raise TypeError(f'Training data should be Dataset instance, met {type(train_set).__name__}')
2581
2582
2583
2584
2585
2586
2587
2588
2589
2590
2591
2592
2593
2594
2595
2596
2597
2598
2599
2600
2601
2602
2603
2604
2605
2606
2607
2608
2609
2610
2611
2612
2613
2614
            params = _choose_param_value(
                main_param_name="machines",
                params=params,
                default_value=None
            )
            # if "machines" is given, assume user wants to do distributed learning, and set up network
            if params["machines"] is None:
                params.pop("machines", None)
            else:
                machines = params["machines"]
                if isinstance(machines, str):
                    num_machines_from_machine_list = len(machines.split(','))
                elif isinstance(machines, (list, set)):
                    num_machines_from_machine_list = len(machines)
                    machines = ','.join(machines)
                else:
                    raise ValueError("Invalid machines in params.")

                params = _choose_param_value(
                    main_param_name="num_machines",
                    params=params,
                    default_value=num_machines_from_machine_list
                )
                params = _choose_param_value(
                    main_param_name="local_listen_port",
                    params=params,
                    default_value=12400
                )
                self.set_network(
                    machines=machines,
                    local_listen_port=params["local_listen_port"],
                    listen_time_out=params.get("time_out", 120),
                    num_machines=params["num_machines"]
                )
2615
            # construct booster object
2616
2617
2618
2619
            train_set.construct()
            # copy the parameters from train_set
            params.update(train_set.get_params())
            params_str = param_dict_to_str(params)
2620
            self.handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
2621
            _safe_call(_LIB.LGBM_BoosterCreate(
2622
                train_set.handle,
wxchan's avatar
wxchan committed
2623
2624
                c_str(params_str),
                ctypes.byref(self.handle)))
2625
            # save reference to data
wxchan's avatar
wxchan committed
2626
2627
2628
2629
            self.train_set = train_set
            self.valid_sets = []
            self.name_valid_sets = []
            self.__num_dataset = 1
Guolin Ke's avatar
Guolin Ke committed
2630
2631
            self.__init_predictor = train_set._predictor
            if self.__init_predictor is not None:
wxchan's avatar
wxchan committed
2632
2633
                _safe_call(_LIB.LGBM_BoosterMerge(
                    self.handle,
Guolin Ke's avatar
Guolin Ke committed
2634
                    self.__init_predictor.handle))
Guolin Ke's avatar
Guolin Ke committed
2635
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2636
2637
2638
2639
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
                self.handle,
                ctypes.byref(out_num_class)))
            self.__num_class = out_num_class.value
2640
            # buffer for inner predict
wxchan's avatar
wxchan committed
2641
2642
2643
            self.__inner_predict_buffer = [None]
            self.__is_predicted_cur_iter = [False]
            self.__get_eval_info()
2644
            self.pandas_categorical = train_set.pandas_categorical
2645
            self.train_set_version = train_set.version
wxchan's avatar
wxchan committed
2646
        elif model_file is not None:
2647
            # Prediction task
Guolin Ke's avatar
Guolin Ke committed
2648
            out_num_iterations = ctypes.c_int(0)
2649
            self.handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
2650
            _safe_call(_LIB.LGBM_BoosterCreateFromModelfile(
2651
                c_str(str(model_file)),
wxchan's avatar
wxchan committed
2652
2653
                ctypes.byref(out_num_iterations),
                ctypes.byref(self.handle)))
Guolin Ke's avatar
Guolin Ke committed
2654
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2655
2656
2657
2658
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
                self.handle,
                ctypes.byref(out_num_class)))
            self.__num_class = out_num_class.value
2659
            self.pandas_categorical = _load_pandas_categorical(file_name=model_file)
2660
        elif model_str is not None:
2661
            self.model_from_string(model_str)
wxchan's avatar
wxchan committed
2662
        else:
2663
2664
            raise TypeError('Need at least one training dataset or model file or model string '
                            'to create Booster instance')
2665
        self.params = params
wxchan's avatar
wxchan committed
2666
2667

    def __del__(self):
2668
2669
2670
2671
2672
2673
2674
2675
2676
2677
        try:
            if self.network:
                self.free_network()
        except AttributeError:
            pass
        try:
            if self.handle is not None:
                _safe_call(_LIB.LGBM_BoosterFree(self.handle))
        except AttributeError:
            pass
wxchan's avatar
wxchan committed
2678

wxchan's avatar
wxchan committed
2679
2680
2681
2682
    def __copy__(self):
        return self.__deepcopy__(None)

    def __deepcopy__(self, _):
2683
        model_str = self.model_to_string(num_iteration=-1)
2684
        booster = Booster(model_str=model_str)
2685
        return booster
wxchan's avatar
wxchan committed
2686
2687
2688
2689
2690
2691
2692

    def __getstate__(self):
        this = self.__dict__.copy()
        handle = this['handle']
        this.pop('train_set', None)
        this.pop('valid_sets', None)
        if handle is not None:
2693
            this["handle"] = self.model_to_string(num_iteration=-1)
wxchan's avatar
wxchan committed
2694
2695
2696
        return this

    def __setstate__(self, state):
2697
2698
        model_str = state.get('handle', None)
        if model_str is not None:
wxchan's avatar
wxchan committed
2699
            handle = ctypes.c_void_p()
Guolin Ke's avatar
Guolin Ke committed
2700
            out_num_iterations = ctypes.c_int(0)
2701
2702
2703
2704
            _safe_call(_LIB.LGBM_BoosterLoadModelFromString(
                c_str(model_str),
                ctypes.byref(out_num_iterations),
                ctypes.byref(handle)))
wxchan's avatar
wxchan committed
2705
2706
2707
            state['handle'] = handle
        self.__dict__.update(state)

wxchan's avatar
wxchan committed
2708
    def free_dataset(self):
Nikita Titov's avatar
Nikita Titov committed
2709
2710
2711
2712
2713
2714
2715
        """Free Booster's Datasets.

        Returns
        -------
        self : Booster
            Booster without Datasets.
        """
wxchan's avatar
wxchan committed
2716
2717
        self.__dict__.pop('train_set', None)
        self.__dict__.pop('valid_sets', None)
2718
        self.__num_dataset = 0
Nikita Titov's avatar
Nikita Titov committed
2719
        return self
wxchan's avatar
wxchan committed
2720

2721
2722
2723
    def _free_buffer(self):
        self.__inner_predict_buffer = []
        self.__is_predicted_cur_iter = []
Nikita Titov's avatar
Nikita Titov committed
2724
        return self
2725

2726
2727
2728
2729
2730
2731
2732
    def set_network(
        self,
        machines: Union[List[str], Set[str], str],
        local_listen_port: int = 12400,
        listen_time_out: int = 120,
        num_machines: int = 1
    ) -> "Booster":
2733
2734
2735
2736
        """Set the network configuration.

        Parameters
        ----------
2737
        machines : list, set or str
2738
            Names of machines.
Nikita Titov's avatar
Nikita Titov committed
2739
        local_listen_port : int, optional (default=12400)
2740
            TCP listen port for local machines.
Nikita Titov's avatar
Nikita Titov committed
2741
        listen_time_out : int, optional (default=120)
2742
            Socket time-out in minutes.
Nikita Titov's avatar
Nikita Titov committed
2743
        num_machines : int, optional (default=1)
2744
            The number of machines for distributed learning application.
Nikita Titov's avatar
Nikita Titov committed
2745
2746
2747
2748
2749

        Returns
        -------
        self : Booster
            Booster with set network.
2750
        """
2751
2752
        if isinstance(machines, (list, set)):
            machines = ','.join(machines)
2753
2754
2755
2756
2757
        _safe_call(_LIB.LGBM_NetworkInit(c_str(machines),
                                         ctypes.c_int(local_listen_port),
                                         ctypes.c_int(listen_time_out),
                                         ctypes.c_int(num_machines)))
        self.network = True
Nikita Titov's avatar
Nikita Titov committed
2758
        return self
2759
2760

    def free_network(self):
Nikita Titov's avatar
Nikita Titov committed
2761
2762
2763
2764
2765
2766
2767
        """Free Booster's network.

        Returns
        -------
        self : Booster
            Booster with freed network.
        """
2768
2769
        _safe_call(_LIB.LGBM_NetworkFree())
        self.network = False
Nikita Titov's avatar
Nikita Titov committed
2770
        return self
2771

2772
2773
2774
    def trees_to_dataframe(self):
        """Parse the fitted model and return in an easy-to-read pandas DataFrame.

2775
2776
2777
2778
        The returned DataFrame has the following columns.

            - ``tree_index`` : int64, which tree a node belongs to. 0-based, so a value of ``6``, for example, means "this node is in the 7th tree".
            - ``node_depth`` : int64, how far a node is from the root of the tree. The root node has a value of ``1``, its direct children are ``2``, etc.
2779
2780
2781
2782
2783
            - ``node_index`` : str, unique identifier for a node.
            - ``left_child`` : str, ``node_index`` of the child node to the left of a split. ``None`` for leaf nodes.
            - ``right_child`` : str, ``node_index`` of the child node to the right of a split. ``None`` for leaf nodes.
            - ``parent_index`` : str, ``node_index`` of this node's parent. ``None`` for the root node.
            - ``split_feature`` : str, name of the feature used for splitting. ``None`` for leaf nodes.
2784
2785
            - ``split_gain`` : float64, gain from adding this split to the tree. ``NaN`` for leaf nodes.
            - ``threshold`` : float64, value of the feature used to decide which side of the split a record will go down. ``NaN`` for leaf nodes.
2786
            - ``decision_type`` : str, logical operator describing how to compare a value to ``threshold``.
2787
2788
              For example, ``split_feature = "Column_10", threshold = 15, decision_type = "<="`` means that
              records where ``Column_10 <= 15`` follow the left side of the split, otherwise follows the right side of the split. ``None`` for leaf nodes.
2789
2790
            - ``missing_direction`` : str, split direction that missing values should go to. ``None`` for leaf nodes.
            - ``missing_type`` : str, describes what types of values are treated as missing.
2791
            - ``value`` : float64, predicted value for this leaf node, multiplied by the learning rate.
2792
            - ``weight`` : float64 or int64, sum of Hessian (second-order derivative of objective), summed over observations that fall in this node.
2793
2794
            - ``count`` : int64, number of records in the training data that fall into this node.

2795
2796
2797
2798
2799
2800
        Returns
        -------
        result : pandas DataFrame
            Returns a pandas DataFrame of the parsed model.
        """
        if not PANDAS_INSTALLED:
2801
2802
            raise LightGBMError('This method cannot be run without pandas installed. '
                                'You must install pandas and restart your session to use this method.')
2803
2804
2805
2806
2807
2808
2809
2810
2811
2812
2813

        if self.num_trees() == 0:
            raise LightGBMError('There are no trees in this Booster and thus nothing to parse')

        def _is_split_node(tree):
            return 'split_index' in tree.keys()

        def create_node_record(tree, node_depth=1, tree_index=None,
                               feature_names=None, parent_node=None):

            def _get_node_index(tree, tree_index):
2814
                tree_num = f'{tree_index}-' if tree_index is not None else ''
2815
2816
2817
                is_split = _is_split_node(tree)
                node_type = 'S' if is_split else 'L'
                # if a single node tree it won't have `leaf_index` so return 0
2818
2819
                node_num = tree.get('split_index' if is_split else 'leaf_index', 0)
                return f"{tree_num}{node_type}{node_num}"
2820
2821
2822
2823
2824
2825
2826
2827
2828
2829
2830
2831

            def _get_split_feature(tree, feature_names):
                if _is_split_node(tree):
                    if feature_names is not None:
                        feature_name = feature_names[tree['split_feature']]
                    else:
                        feature_name = tree['split_feature']
                else:
                    feature_name = None
                return feature_name

            def _is_single_node_tree(tree):
2832
                return set(tree.keys()) == {'leaf_value'}
2833
2834
2835
2836
2837
2838
2839
2840
2841
2842
2843
2844
2845
2846
2847
2848
2849
2850
2851
2852
2853
2854
2855
2856
2857
2858
2859
2860
2861
2862
2863
2864
2865
2866
2867
2868
2869
2870
2871
2872
2873
2874
2875
2876
2877
2878
2879
2880
2881
2882
2883
2884
2885
2886
2887
2888
2889
2890
2891
2892
2893
2894
2895
2896
2897
2898
2899
2900
2901
2902
2903
2904
2905

            # Create the node record, and populate universal data members
            node = OrderedDict()
            node['tree_index'] = tree_index
            node['node_depth'] = node_depth
            node['node_index'] = _get_node_index(tree, tree_index)
            node['left_child'] = None
            node['right_child'] = None
            node['parent_index'] = parent_node
            node['split_feature'] = _get_split_feature(tree, feature_names)
            node['split_gain'] = None
            node['threshold'] = None
            node['decision_type'] = None
            node['missing_direction'] = None
            node['missing_type'] = None
            node['value'] = None
            node['weight'] = None
            node['count'] = None

            # Update values to reflect node type (leaf or split)
            if _is_split_node(tree):
                node['left_child'] = _get_node_index(tree['left_child'], tree_index)
                node['right_child'] = _get_node_index(tree['right_child'], tree_index)
                node['split_gain'] = tree['split_gain']
                node['threshold'] = tree['threshold']
                node['decision_type'] = tree['decision_type']
                node['missing_direction'] = 'left' if tree['default_left'] else 'right'
                node['missing_type'] = tree['missing_type']
                node['value'] = tree['internal_value']
                node['weight'] = tree['internal_weight']
                node['count'] = tree['internal_count']
            else:
                node['value'] = tree['leaf_value']
                if not _is_single_node_tree(tree):
                    node['weight'] = tree['leaf_weight']
                    node['count'] = tree['leaf_count']

            return node

        def tree_dict_to_node_list(tree, node_depth=1, tree_index=None,
                                   feature_names=None, parent_node=None):

            node = create_node_record(tree,
                                      node_depth=node_depth,
                                      tree_index=tree_index,
                                      feature_names=feature_names,
                                      parent_node=parent_node)

            res = [node]

            if _is_split_node(tree):
                # traverse the next level of the tree
                children = ['left_child', 'right_child']
                for child in children:
                    subtree_list = tree_dict_to_node_list(
                        tree[child],
                        node_depth=node_depth + 1,
                        tree_index=tree_index,
                        feature_names=feature_names,
                        parent_node=node['node_index'])
                    # In tree format, "subtree_list" is a list of node records (dicts),
                    # and we add node to the list.
                    res.extend(subtree_list)
            return res

        model_dict = self.dump_model()
        feature_names = model_dict['feature_names']
        model_list = []
        for tree in model_dict['tree_info']:
            model_list.extend(tree_dict_to_node_list(tree['tree_structure'],
                                                     tree_index=tree['tree_index'],
                                                     feature_names=feature_names))

2906
        return pd_DataFrame(model_list, columns=model_list[0].keys())
2907

wxchan's avatar
wxchan committed
2908
    def set_train_data_name(self, name):
2909
2910
2911
2912
        """Set the name to the training Dataset.

        Parameters
        ----------
2913
        name : str
Nikita Titov's avatar
Nikita Titov committed
2914
2915
2916
2917
2918
2919
            Name for the training Dataset.

        Returns
        -------
        self : Booster
            Booster with set training Dataset name.
2920
        """
2921
        self._train_data_name = name
Nikita Titov's avatar
Nikita Titov committed
2922
        return self
wxchan's avatar
wxchan committed
2923
2924

    def add_valid(self, data, name):
2925
        """Add validation data.
wxchan's avatar
wxchan committed
2926
2927
2928
2929

        Parameters
        ----------
        data : Dataset
2930
            Validation data.
2931
        name : str
2932
            Name of validation data.
Nikita Titov's avatar
Nikita Titov committed
2933
2934
2935
2936
2937

        Returns
        -------
        self : Booster
            Booster with set validation data.
wxchan's avatar
wxchan committed
2938
        """
Guolin Ke's avatar
Guolin Ke committed
2939
        if not isinstance(data, Dataset):
2940
            raise TypeError(f'Validation data should be Dataset instance, met {type(data).__name__}')
Guolin Ke's avatar
Guolin Ke committed
2941
        if data._predictor is not self.__init_predictor:
2942
2943
            raise LightGBMError("Add validation data failed, "
                                "you should use same predictor for these data")
wxchan's avatar
wxchan committed
2944
2945
        _safe_call(_LIB.LGBM_BoosterAddValidData(
            self.handle,
wxchan's avatar
wxchan committed
2946
            data.construct().handle))
wxchan's avatar
wxchan committed
2947
2948
2949
2950
2951
        self.valid_sets.append(data)
        self.name_valid_sets.append(name)
        self.__num_dataset += 1
        self.__inner_predict_buffer.append(None)
        self.__is_predicted_cur_iter.append(False)
Nikita Titov's avatar
Nikita Titov committed
2952
        return self
wxchan's avatar
wxchan committed
2953
2954

    def reset_parameter(self, params):
2955
        """Reset parameters of Booster.
wxchan's avatar
wxchan committed
2956
2957
2958
2959

        Parameters
        ----------
        params : dict
2960
            New parameters for Booster.
Nikita Titov's avatar
Nikita Titov committed
2961
2962
2963
2964
2965

        Returns
        -------
        self : Booster
            Booster with new parameters.
wxchan's avatar
wxchan committed
2966
2967
2968
2969
2970
2971
        """
        params_str = param_dict_to_str(params)
        if params_str:
            _safe_call(_LIB.LGBM_BoosterResetParameter(
                self.handle,
                c_str(params_str)))
Guolin Ke's avatar
Guolin Ke committed
2972
        self.params.update(params)
Nikita Titov's avatar
Nikita Titov committed
2973
        return self
wxchan's avatar
wxchan committed
2974
2975

    def update(self, train_set=None, fobj=None):
Nikita Titov's avatar
Nikita Titov committed
2976
        """Update Booster for one iteration.
2977

wxchan's avatar
wxchan committed
2978
2979
        Parameters
        ----------
2980
2981
2982
2983
        train_set : Dataset or None, optional (default=None)
            Training data.
            If None, last training data is used.
        fobj : callable or None, optional (default=None)
wxchan's avatar
wxchan committed
2984
            Customized objective function.
2985
2986
2987
            Should accept two parameters: preds, train_data,
            and return (grad, hess).

2988
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
2989
                    The predicted values.
2990
2991
                    Predicted values are returned before any transformation,
                    e.g. they are raw margin instead of probability of positive class for binary task.
2992
2993
                train_data : Dataset
                    The training dataset.
2994
                grad : numpy 1-D array or numpy 2-D array (for multi-class task)
2995
2996
                    The value of the first order derivative (gradient) of the loss
                    with respect to the elements of preds for each sample point.
2997
                hess : numpy 1-D array or numpy 2-D array (for multi-class task)
2998
2999
                    The value of the second order derivative (Hessian) of the loss
                    with respect to the elements of preds for each sample point.
wxchan's avatar
wxchan committed
3000

3001
            For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes],
3002
            and grad and hess should be returned in the same format.
3003

wxchan's avatar
wxchan committed
3004
3005
        Returns
        -------
3006
3007
        is_finished : bool
            Whether the update was successfully finished.
wxchan's avatar
wxchan committed
3008
        """
3009
        # need reset training data
3010
3011
3012
3013
3014
3015
        if train_set is None and self.train_set_version != self.train_set.version:
            train_set = self.train_set
            is_the_same_train_set = False
        else:
            is_the_same_train_set = train_set is self.train_set and self.train_set_version == train_set.version
        if train_set is not None and not is_the_same_train_set:
Guolin Ke's avatar
Guolin Ke committed
3016
            if not isinstance(train_set, Dataset):
3017
                raise TypeError(f'Training data should be Dataset instance, met {type(train_set).__name__}')
Guolin Ke's avatar
Guolin Ke committed
3018
            if train_set._predictor is not self.__init_predictor:
3019
3020
                raise LightGBMError("Replace training data failed, "
                                    "you should use same predictor for these data")
wxchan's avatar
wxchan committed
3021
3022
3023
            self.train_set = train_set
            _safe_call(_LIB.LGBM_BoosterResetTrainingData(
                self.handle,
wxchan's avatar
wxchan committed
3024
                self.train_set.construct().handle))
wxchan's avatar
wxchan committed
3025
            self.__inner_predict_buffer[0] = None
3026
            self.train_set_version = self.train_set.version
wxchan's avatar
wxchan committed
3027
3028
        is_finished = ctypes.c_int(0)
        if fobj is None:
3029
            if self.__set_objective_to_none:
3030
                raise LightGBMError('Cannot update due to null objective function.')
wxchan's avatar
wxchan committed
3031
3032
3033
            _safe_call(_LIB.LGBM_BoosterUpdateOneIter(
                self.handle,
                ctypes.byref(is_finished)))
3034
            self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
wxchan's avatar
wxchan committed
3035
3036
            return is_finished.value == 1
        else:
3037
            if not self.__set_objective_to_none:
Nikita Titov's avatar
Nikita Titov committed
3038
                self.reset_parameter({"objective": "none"}).__set_objective_to_none = True
wxchan's avatar
wxchan committed
3039
3040
3041
3042
            grad, hess = fobj(self.__inner_predict(0), self.train_set)
            return self.__boost(grad, hess)

    def __boost(self, grad, hess):
3043
        """Boost Booster for one iteration with customized gradient statistics.
Nikita Titov's avatar
Nikita Titov committed
3044

Nikita Titov's avatar
Nikita Titov committed
3045
3046
        .. note::

3047
3048
            Score is returned before any transformation,
            e.g. it is raw margin instead of probability of positive class for binary task.
3049
            For multi-class task, score are numpy 2-D array of shape = [n_samples, n_classes],
3050
            and grad and hess should be returned in the same format.
3051

wxchan's avatar
wxchan committed
3052
3053
        Parameters
        ----------
3054
        grad : numpy 1-D array or numpy 2-D array (for multi-class task)
3055
3056
            The value of the first order derivative (gradient) of the loss
            with respect to the elements of score for each sample point.
3057
        hess : numpy 1-D array or numpy 2-D array (for multi-class task)
3058
3059
            The value of the second order derivative (Hessian) of the loss
            with respect to the elements of score for each sample point.
wxchan's avatar
wxchan committed
3060
3061
3062

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
3063
3064
        is_finished : bool
            Whether the boost was successfully finished.
wxchan's avatar
wxchan committed
3065
        """
3066
3067
3068
        if self.__num_class > 1:
            grad = grad.ravel(order='F')
            hess = hess.ravel(order='F')
3069
3070
        grad = list_to_1d_numpy(grad, name='gradient')
        hess = list_to_1d_numpy(hess, name='hessian')
3071
3072
        assert grad.flags.c_contiguous
        assert hess.flags.c_contiguous
wxchan's avatar
wxchan committed
3073
        if len(grad) != len(hess):
3074
3075
            raise ValueError(f"Lengths of gradient ({len(grad)}) and Hessian ({len(hess)}) don't match")
        num_train_data = self.train_set.num_data()
3076
        if len(grad) != num_train_data * self.__num_class:
3077
3078
3079
            raise ValueError(
                f"Lengths of gradient ({len(grad)}) and Hessian ({len(hess)}) "
                f"don't match training data length ({num_train_data}) * "
3080
                f"number of models per one iteration ({self.__num_class})"
3081
            )
wxchan's avatar
wxchan committed
3082
3083
3084
3085
3086
3087
        is_finished = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterUpdateOneIterCustom(
            self.handle,
            grad.ctypes.data_as(ctypes.POINTER(ctypes.c_float)),
            hess.ctypes.data_as(ctypes.POINTER(ctypes.c_float)),
            ctypes.byref(is_finished)))
3088
        self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
wxchan's avatar
wxchan committed
3089
3090
3091
        return is_finished.value == 1

    def rollback_one_iter(self):
Nikita Titov's avatar
Nikita Titov committed
3092
3093
3094
3095
3096
3097
3098
        """Rollback one iteration.

        Returns
        -------
        self : Booster
            Booster with rolled back one iteration.
        """
wxchan's avatar
wxchan committed
3099
3100
        _safe_call(_LIB.LGBM_BoosterRollbackOneIter(
            self.handle))
3101
        self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
Nikita Titov's avatar
Nikita Titov committed
3102
        return self
wxchan's avatar
wxchan committed
3103
3104

    def current_iteration(self):
3105
3106
3107
3108
3109
3110
3111
        """Get the index of the current iteration.

        Returns
        -------
        cur_iter : int
            The index of the current iteration.
        """
Guolin Ke's avatar
Guolin Ke committed
3112
        out_cur_iter = ctypes.c_int(0)
wxchan's avatar
wxchan committed
3113
3114
3115
3116
3117
        _safe_call(_LIB.LGBM_BoosterGetCurrentIteration(
            self.handle,
            ctypes.byref(out_cur_iter)))
        return out_cur_iter.value

3118
3119
3120
3121
3122
3123
3124
3125
3126
3127
3128
3129
3130
3131
3132
3133
3134
3135
3136
3137
3138
3139
3140
3141
3142
3143
3144
3145
    def num_model_per_iteration(self):
        """Get number of models per iteration.

        Returns
        -------
        model_per_iter : int
            The number of models per iteration.
        """
        model_per_iter = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterNumModelPerIteration(
            self.handle,
            ctypes.byref(model_per_iter)))
        return model_per_iter.value

    def num_trees(self):
        """Get number of weak sub-models.

        Returns
        -------
        num_trees : int
            The number of weak sub-models.
        """
        num_trees = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterNumberOfTotalModel(
            self.handle,
            ctypes.byref(num_trees)))
        return num_trees.value

3146
3147
3148
3149
3150
3151
3152
3153
3154
3155
3156
3157
3158
3159
3160
3161
3162
3163
3164
3165
3166
3167
3168
3169
3170
3171
3172
3173
    def upper_bound(self):
        """Get upper bound value of a model.

        Returns
        -------
        upper_bound : double
            Upper bound value of the model.
        """
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetUpperBoundValue(
            self.handle,
            ctypes.byref(ret)))
        return ret.value

    def lower_bound(self):
        """Get lower bound value of a model.

        Returns
        -------
        lower_bound : double
            Lower bound value of the model.
        """
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetLowerBoundValue(
            self.handle,
            ctypes.byref(ret)))
        return ret.value

wxchan's avatar
wxchan committed
3174
    def eval(self, data, name, feval=None):
3175
        """Evaluate for data.
wxchan's avatar
wxchan committed
3176
3177
3178

        Parameters
        ----------
3179
3180
        data : Dataset
            Data for the evaluating.
3181
        name : str
3182
            Name of the data.
3183
        feval : callable, list of callable, or None, optional (default=None)
3184
            Customized evaluation function.
3185
            Each evaluation function should accept two parameters: preds, eval_data,
3186
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
3187

3188
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
3189
                    The predicted values.
3190
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
3191
3192
                    If ``fobj`` is specified, predicted values are returned before any transformation,
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
3193
                eval_data : Dataset
3194
                    A ``Dataset`` to evaluate.
3195
                eval_name : str
Andrew Ziem's avatar
Andrew Ziem committed
3196
                    The name of evaluation function (without whitespace).
3197
3198
3199
3200
3201
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

wxchan's avatar
wxchan committed
3202
3203
        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
3204
        result : list
3205
            List with evaluation results.
wxchan's avatar
wxchan committed
3206
        """
Guolin Ke's avatar
Guolin Ke committed
3207
3208
        if not isinstance(data, Dataset):
            raise TypeError("Can only eval for Dataset instance")
wxchan's avatar
wxchan committed
3209
3210
3211
3212
        data_idx = -1
        if data is self.train_set:
            data_idx = 0
        else:
3213
            for i in range(len(self.valid_sets)):
wxchan's avatar
wxchan committed
3214
3215
3216
                if data is self.valid_sets[i]:
                    data_idx = i + 1
                    break
3217
        # need to push new valid data
wxchan's avatar
wxchan committed
3218
3219
3220
3221
3222
3223
3224
        if data_idx == -1:
            self.add_valid(data, name)
            data_idx = self.__num_dataset - 1

        return self.__inner_eval(name, data_idx, feval)

    def eval_train(self, feval=None):
3225
        """Evaluate for training data.
wxchan's avatar
wxchan committed
3226
3227
3228

        Parameters
        ----------
3229
        feval : callable, list of callable, or None, optional (default=None)
3230
            Customized evaluation function.
3231
            Each evaluation function should accept two parameters: preds, eval_data,
3232
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
3233

3234
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
3235
                    The predicted values.
3236
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
3237
3238
                    If ``fobj`` is specified, predicted values are returned before any transformation,
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
Akshita Dixit's avatar
Akshita Dixit committed
3239
                eval_data : Dataset
3240
                    The training dataset.
3241
                eval_name : str
Andrew Ziem's avatar
Andrew Ziem committed
3242
                    The name of evaluation function (without whitespace).
3243
3244
3245
3246
3247
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

wxchan's avatar
wxchan committed
3248
3249
        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
3250
        result : list
3251
            List with evaluation results.
wxchan's avatar
wxchan committed
3252
        """
3253
        return self.__inner_eval(self._train_data_name, 0, feval)
wxchan's avatar
wxchan committed
3254
3255

    def eval_valid(self, feval=None):
3256
        """Evaluate for validation data.
wxchan's avatar
wxchan committed
3257
3258
3259

        Parameters
        ----------
3260
        feval : callable, list of callable, or None, optional (default=None)
3261
            Customized evaluation function.
3262
            Each evaluation function should accept two parameters: preds, eval_data,
3263
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
3264

3265
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
3266
                    The predicted values.
3267
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
3268
3269
                    If ``fobj`` is specified, predicted values are returned before any transformation,
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
Akshita Dixit's avatar
Akshita Dixit committed
3270
                eval_data : Dataset
3271
                    The validation dataset.
3272
                eval_name : str
Andrew Ziem's avatar
Andrew Ziem committed
3273
                    The name of evaluation function (without whitespace).
3274
3275
3276
3277
3278
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

wxchan's avatar
wxchan committed
3279
3280
        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
3281
        result : list
3282
            List with evaluation results.
wxchan's avatar
wxchan committed
3283
        """
3284
        return [item for i in range(1, self.__num_dataset)
wxchan's avatar
wxchan committed
3285
                for item in self.__inner_eval(self.name_valid_sets[i - 1], i, feval)]
wxchan's avatar
wxchan committed
3286

3287
    def save_model(self, filename, num_iteration=None, start_iteration=0, importance_type='split'):
3288
        """Save Booster to file.
wxchan's avatar
wxchan committed
3289
3290
3291

        Parameters
        ----------
3292
        filename : str or pathlib.Path
3293
            Filename to save Booster.
3294
3295
3296
3297
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be saved.
            If None, if the best iteration exists, it is saved; otherwise, all iterations are saved.
            If <= 0, all iterations are saved.
Nikita Titov's avatar
Nikita Titov committed
3298
        start_iteration : int, optional (default=0)
3299
            Start index of the iteration that should be saved.
3300
        importance_type : str, optional (default="split")
3301
3302
3303
            What type of feature importance should be saved.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
Nikita Titov's avatar
Nikita Titov committed
3304
3305
3306
3307
3308

        Returns
        -------
        self : Booster
            Returns self.
wxchan's avatar
wxchan committed
3309
        """
3310
        if num_iteration is None:
3311
            num_iteration = self.best_iteration
3312
        importance_type_int = FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
wxchan's avatar
wxchan committed
3313
3314
        _safe_call(_LIB.LGBM_BoosterSaveModel(
            self.handle,
3315
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
3316
            ctypes.c_int(num_iteration),
3317
            ctypes.c_int(importance_type_int),
3318
            c_str(str(filename))))
3319
        _dump_pandas_categorical(self.pandas_categorical, filename)
Nikita Titov's avatar
Nikita Titov committed
3320
        return self
wxchan's avatar
wxchan committed
3321

3322
    def shuffle_models(self, start_iteration=0, end_iteration=-1):
3323
        """Shuffle models.
Nikita Titov's avatar
Nikita Titov committed
3324

3325
3326
3327
        Parameters
        ----------
        start_iteration : int, optional (default=0)
3328
            The first iteration that will be shuffled.
3329
3330
        end_iteration : int, optional (default=-1)
            The last iteration that will be shuffled.
3331
            If <= 0, means the last available iteration.
3332

Nikita Titov's avatar
Nikita Titov committed
3333
3334
3335
3336
        Returns
        -------
        self : Booster
            Booster with shuffled models.
3337
        """
3338
3339
        _safe_call(_LIB.LGBM_BoosterShuffleModels(
            self.handle,
Guolin Ke's avatar
Guolin Ke committed
3340
3341
            ctypes.c_int(start_iteration),
            ctypes.c_int(end_iteration)))
Nikita Titov's avatar
Nikita Titov committed
3342
        return self
3343

3344
    def model_from_string(self, model_str):
3345
3346
3347
3348
        """Load Booster from a string.

        Parameters
        ----------
3349
        model_str : str
3350
3351
3352
3353
            Model will be loaded from this string.

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
3354
        self : Booster
3355
3356
            Loaded Booster object.
        """
3357
3358
3359
3360
        if self.handle is not None:
            _safe_call(_LIB.LGBM_BoosterFree(self.handle))
        self._free_buffer()
        self.handle = ctypes.c_void_p()
3361
3362
3363
3364
3365
3366
3367
3368
3369
3370
        out_num_iterations = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterLoadModelFromString(
            c_str(model_str),
            ctypes.byref(out_num_iterations),
            ctypes.byref(self.handle)))
        out_num_class = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetNumClasses(
            self.handle,
            ctypes.byref(out_num_class)))
        self.__num_class = out_num_class.value
3371
        self.pandas_categorical = _load_pandas_categorical(model_str=model_str)
3372
3373
        return self

3374
    def model_to_string(self, num_iteration=None, start_iteration=0, importance_type='split'):
3375
        """Save Booster to string.
3376

3377
3378
3379
3380
3381
3382
        Parameters
        ----------
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be saved.
            If None, if the best iteration exists, it is saved; otherwise, all iterations are saved.
            If <= 0, all iterations are saved.
Nikita Titov's avatar
Nikita Titov committed
3383
        start_iteration : int, optional (default=0)
3384
            Start index of the iteration that should be saved.
3385
        importance_type : str, optional (default="split")
3386
3387
3388
            What type of feature importance should be saved.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
3389
3390
3391

        Returns
        -------
3392
        str_repr : str
3393
3394
            String representation of Booster.
        """
3395
        if num_iteration is None:
3396
            num_iteration = self.best_iteration
3397
        importance_type_int = FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
3398
        buffer_len = 1 << 20
3399
        tmp_out_len = ctypes.c_int64(0)
3400
3401
3402
3403
        string_buffer = ctypes.create_string_buffer(buffer_len)
        ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
        _safe_call(_LIB.LGBM_BoosterSaveModelToString(
            self.handle,
3404
            ctypes.c_int(start_iteration),
3405
            ctypes.c_int(num_iteration),
3406
            ctypes.c_int(importance_type_int),
3407
            ctypes.c_int64(buffer_len),
3408
3409
3410
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
3411
        # if buffer length is not long enough, re-allocate a buffer
3412
3413
3414
3415
3416
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
            ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
            _safe_call(_LIB.LGBM_BoosterSaveModelToString(
                self.handle,
3417
                ctypes.c_int(start_iteration),
3418
                ctypes.c_int(num_iteration),
3419
                ctypes.c_int(importance_type_int),
3420
                ctypes.c_int64(actual_len),
3421
3422
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
3423
        ret = string_buffer.value.decode('utf-8')
3424
3425
        ret += _dump_pandas_categorical(self.pandas_categorical)
        return ret
3426

3427
    def dump_model(self, num_iteration=None, start_iteration=0, importance_type='split', object_hook=None):
Nikita Titov's avatar
Nikita Titov committed
3428
        """Dump Booster to JSON format.
wxchan's avatar
wxchan committed
3429

3430
3431
        Parameters
        ----------
3432
3433
3434
3435
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be dumped.
            If None, if the best iteration exists, it is dumped; otherwise, all iterations are dumped.
            If <= 0, all iterations are dumped.
Nikita Titov's avatar
Nikita Titov committed
3436
        start_iteration : int, optional (default=0)
3437
            Start index of the iteration that should be dumped.
3438
        importance_type : str, optional (default="split")
3439
3440
3441
            What type of feature importance should be dumped.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
3442
3443
3444
3445
3446
3447
3448
3449
3450
        object_hook : callable or None, optional (default=None)
            If not None, ``object_hook`` is a function called while parsing the json
            string returned by the C API. It may be used to alter the json, to store
            specific values while building the json structure. It avoids
            walking through the structure again. It saves a significant amount
            of time if the number of trees is huge.
            Signature is ``def object_hook(node: dict) -> dict``.
            None is equivalent to ``lambda node: node``.
            See documentation of ``json.loads()`` for further details.
3451

wxchan's avatar
wxchan committed
3452
3453
        Returns
        -------
3454
        json_repr : dict
Nikita Titov's avatar
Nikita Titov committed
3455
            JSON format of Booster.
wxchan's avatar
wxchan committed
3456
        """
3457
        if num_iteration is None:
3458
            num_iteration = self.best_iteration
3459
        importance_type_int = FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
wxchan's avatar
wxchan committed
3460
        buffer_len = 1 << 20
3461
        tmp_out_len = ctypes.c_int64(0)
wxchan's avatar
wxchan committed
3462
3463
3464
3465
        string_buffer = ctypes.create_string_buffer(buffer_len)
        ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
        _safe_call(_LIB.LGBM_BoosterDumpModel(
            self.handle,
3466
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
3467
            ctypes.c_int(num_iteration),
3468
            ctypes.c_int(importance_type_int),
3469
            ctypes.c_int64(buffer_len),
wxchan's avatar
wxchan committed
3470
            ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
3471
            ptr_string_buffer))
wxchan's avatar
wxchan committed
3472
        actual_len = tmp_out_len.value
3473
        # if buffer length is not long enough, reallocate a buffer
wxchan's avatar
wxchan committed
3474
3475
3476
3477
3478
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
            ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
            _safe_call(_LIB.LGBM_BoosterDumpModel(
                self.handle,
3479
                ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
3480
                ctypes.c_int(num_iteration),
3481
                ctypes.c_int(importance_type_int),
3482
                ctypes.c_int64(actual_len),
wxchan's avatar
wxchan committed
3483
                ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
3484
                ptr_string_buffer))
3485
        ret = json.loads(string_buffer.value.decode('utf-8'), object_hook=object_hook)
3486
3487
3488
        ret['pandas_categorical'] = json.loads(json.dumps(self.pandas_categorical,
                                                          default=json_default_with_numpy))
        return ret
wxchan's avatar
wxchan committed
3489

3490
    def predict(self, data, start_iteration=0, num_iteration=None,
3491
                raw_score=False, pred_leaf=False, pred_contrib=False,
3492
                data_has_header=False, is_reshape=True, **kwargs):
3493
        """Make a prediction.
wxchan's avatar
wxchan committed
3494
3495
3496

        Parameters
        ----------
3497
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
3498
            Data source for prediction.
3499
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
3500
        start_iteration : int, optional (default=0)
3501
            Start index of the iteration to predict.
3502
            If <= 0, starts from the first iteration.
3503
        num_iteration : int or None, optional (default=None)
3504
3505
3506
3507
            Total number of iterations used in the prediction.
            If None, if the best iteration exists and start_iteration <= 0, the best iteration is used;
            otherwise, all iterations from ``start_iteration`` are used (no limits).
            If <= 0, all iterations from ``start_iteration`` are used (no limits).
3508
3509
3510
3511
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        pred_leaf : bool, optional (default=False)
            Whether to predict leaf index.
3512
3513
        pred_contrib : bool, optional (default=False)
            Whether to predict feature contributions.
3514

Nikita Titov's avatar
Nikita Titov committed
3515
3516
3517
3518
3519
3520
3521
            .. note::

                If you want to get more explanations for your model's predictions using SHAP values,
                like SHAP interaction values,
                you can install the shap package (https://github.com/slundberg/shap).
                Note that unlike the shap package, with ``pred_contrib`` we return a matrix with an extra
                column, where the last column is the expected value.
3522

3523
3524
        data_has_header : bool, optional (default=False)
            Whether the data has header.
3525
            Used only if data is str.
3526
3527
        is_reshape : bool, optional (default=True)
            If True, result is reshaped to [nrow, ncol].
3528
3529
        **kwargs
            Other parameters for the prediction.
wxchan's avatar
wxchan committed
3530
3531
3532

        Returns
        -------
3533
        result : numpy array, scipy.sparse or list of scipy.sparse
3534
            Prediction result.
3535
            Can be sparse or a list of sparse objects (each element represents predictions for one class) for feature contributions (when ``pred_contrib=True``).
wxchan's avatar
wxchan committed
3536
        """
3537
        predictor = self._to_predictor(deepcopy(kwargs))
3538
        if num_iteration is None:
3539
            if start_iteration <= 0:
3540
3541
3542
3543
                num_iteration = self.best_iteration
            else:
                num_iteration = -1
        return predictor.predict(data, start_iteration, num_iteration,
3544
3545
                                 raw_score, pred_leaf, pred_contrib,
                                 data_has_header, is_reshape)
wxchan's avatar
wxchan committed
3546

3547
3548
3549
3550
3551
3552
3553
3554
3555
3556
3557
3558
3559
3560
3561
    def refit(
        self,
        data,
        label,
        decay_rate=0.9,
        reference=None,
        weight=None,
        group=None,
        init_score=None,
        feature_name='auto',
        categorical_feature='auto',
        dataset_params=None,
        free_raw_data=True,
        **kwargs
    ):
Guolin Ke's avatar
Guolin Ke committed
3562
3563
3564
3565
        """Refit the existing Booster by new data.

        Parameters
        ----------
3566
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
Guolin Ke's avatar
Guolin Ke committed
3567
            Data source for refit.
3568
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
3569
        label : list, numpy 1-D array or pandas Series / one-column DataFrame
Guolin Ke's avatar
Guolin Ke committed
3570
3571
            Label for refit.
        decay_rate : float, optional (default=0.9)
3572
3573
            Decay rate of refit,
            will use ``leaf_output = decay_rate * old_leaf_output + (1.0 - decay_rate) * new_leaf_output`` to refit trees.
3574
3575
3576
        reference : Dataset or None, optional (default=None)
            Reference for ``data``.
        weight : list, numpy 1-D array, pandas Series or None, optional (default=None)
3577
            Weight for each ``data`` instance. Weights should be non-negative.
3578
3579
3580
3581
3582
3583
3584
3585
3586
3587
3588
3589
3590
3591
3592
3593
        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
            Group/query size for ``data``.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None, optional (default=None)
            Init score for ``data``.
        feature_name : list of str, or 'auto', optional (default="auto")
            Feature names for ``data``.
            If 'auto' and data is pandas DataFrame, data columns names are used.
        categorical_feature : list of str or int, or 'auto', optional (default="auto")
            Categorical features for ``data``.
            If list of int, interpreted as indices.
            If list of str, interpreted as feature names (need to specify ``feature_name`` as well).
            If 'auto' and data is pandas DataFrame, pandas unordered categorical columns are used.
3594
            All values in categorical features will be cast to int32 and thus should be less than int32 max value (2147483647).
3595
3596
3597
            Large values could be memory consuming. Consider using consecutive integers starting from zero.
            All negative values in categorical features will be treated as missing values.
            The output cannot be monotonically constrained with respect to a categorical feature.
3598
            Floating point numbers in categorical features will be rounded towards 0.
3599
3600
3601
3602
        dataset_params : dict or None, optional (default=None)
            Other parameters for Dataset ``data``.
        free_raw_data : bool, optional (default=True)
            If True, raw data is freed after constructing inner Dataset for ``data``.
3603
3604
        **kwargs
            Other parameters for refit.
3605
            These parameters will be passed to ``predict`` method.
Guolin Ke's avatar
Guolin Ke committed
3606
3607
3608
3609
3610
3611

        Returns
        -------
        result : Booster
            Refitted Booster.
        """
3612
3613
        if self.__set_objective_to_none:
            raise LightGBMError('Cannot refit due to null objective function.')
3614
3615
        if dataset_params is None:
            dataset_params = {}
3616
        predictor = self._to_predictor(deepcopy(kwargs))
3617
        leaf_preds = predictor.predict(data, -1, pred_leaf=True)
3618
        nrow, ncol = leaf_preds.shape
3619
        out_is_linear = ctypes.c_int(0)
3620
3621
3622
        _safe_call(_LIB.LGBM_BoosterGetLinear(
            self.handle,
            ctypes.byref(out_is_linear)))
Nikita Titov's avatar
Nikita Titov committed
3623
3624
3625
3626
3627
        new_params = _choose_param_value(
            main_param_name="linear_tree",
            params=self.params,
            default_value=None
        )
3628
        new_params["linear_tree"] = bool(out_is_linear.value)
3629
3630
3631
3632
3633
3634
3635
3636
3637
3638
3639
3640
3641
        new_params.update(dataset_params)
        train_set = Dataset(
            data=data,
            label=label,
            reference=reference,
            weight=weight,
            group=group,
            init_score=init_score,
            feature_name=feature_name,
            categorical_feature=categorical_feature,
            params=new_params,
            free_raw_data=free_raw_data,
        )
3642
        new_params['refit_decay_rate'] = decay_rate
3643
        new_booster = Booster(new_params, train_set)
Guolin Ke's avatar
Guolin Ke committed
3644
3645
3646
3647
3648
        # Copy models
        _safe_call(_LIB.LGBM_BoosterMerge(
            new_booster.handle,
            predictor.handle))
        leaf_preds = leaf_preds.reshape(-1)
3649
        ptr_data, _, _ = c_int_array(leaf_preds)
Guolin Ke's avatar
Guolin Ke committed
3650
3651
3652
        _safe_call(_LIB.LGBM_BoosterRefit(
            new_booster.handle,
            ptr_data,
3653
3654
            ctypes.c_int32(nrow),
            ctypes.c_int32(ncol)))
3655
3656
        new_booster.network = self.network
        new_booster.__attr = self.__attr.copy()
Guolin Ke's avatar
Guolin Ke committed
3657
3658
        return new_booster

3659
    def get_leaf_output(self, tree_id, leaf_id):
3660
3661
3662
3663
3664
3665
3666
3667
3668
3669
3670
3671
3672
3673
        """Get the output of a leaf.

        Parameters
        ----------
        tree_id : int
            The index of the tree.
        leaf_id : int
            The index of the leaf in the tree.

        Returns
        -------
        result : float
            The output of the leaf.
        """
3674
3675
3676
3677
3678
3679
3680
3681
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetLeafValue(
            self.handle,
            ctypes.c_int(tree_id),
            ctypes.c_int(leaf_id),
            ctypes.byref(ret)))
        return ret.value

3682
    def _to_predictor(self, pred_parameter=None):
3683
        """Convert to predictor."""
3684
        predictor = _InnerPredictor(booster_handle=self.handle, pred_parameter=pred_parameter)
3685
        predictor.pandas_categorical = self.pandas_categorical
wxchan's avatar
wxchan committed
3686
3687
        return predictor

3688
    def num_feature(self):
3689
3690
3691
3692
3693
3694
3695
        """Get number of features.

        Returns
        -------
        num_feature : int
            The number of features.
        """
3696
3697
3698
3699
3700
3701
        out_num_feature = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetNumFeature(
            self.handle,
            ctypes.byref(out_num_feature)))
        return out_num_feature.value

wxchan's avatar
wxchan committed
3702
    def feature_name(self):
3703
        """Get names of features.
wxchan's avatar
wxchan committed
3704
3705
3706

        Returns
        -------
3707
        result : list of str
3708
            List with names of features.
wxchan's avatar
wxchan committed
3709
        """
3710
        num_feature = self.num_feature()
3711
        # Get name of features
wxchan's avatar
wxchan committed
3712
        tmp_out_len = ctypes.c_int(0)
3713
3714
        reserved_string_buffer_size = 255
        required_string_buffer_size = ctypes.c_size_t(0)
3715
        string_buffers = [ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(num_feature)]
wxchan's avatar
wxchan committed
3716
3717
3718
        ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
        _safe_call(_LIB.LGBM_BoosterGetFeatureNames(
            self.handle,
3719
            ctypes.c_int(num_feature),
wxchan's avatar
wxchan committed
3720
            ctypes.byref(tmp_out_len),
3721
            ctypes.c_size_t(reserved_string_buffer_size),
3722
            ctypes.byref(required_string_buffer_size),
wxchan's avatar
wxchan committed
3723
3724
3725
            ptr_string_buffers))
        if num_feature != tmp_out_len.value:
            raise ValueError("Length of feature names doesn't equal with num_feature")
3726
3727
3728
3729
3730
3731
3732
3733
3734
3735
3736
3737
        actual_string_buffer_size = required_string_buffer_size.value
        # if buffer length is not long enough, reallocate buffers
        if reserved_string_buffer_size < actual_string_buffer_size:
            string_buffers = [ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(num_feature)]
            ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
            _safe_call(_LIB.LGBM_BoosterGetFeatureNames(
                self.handle,
                ctypes.c_int(num_feature),
                ctypes.byref(tmp_out_len),
                ctypes.c_size_t(actual_string_buffer_size),
                ctypes.byref(required_string_buffer_size),
                ptr_string_buffers))
3738
        return [string_buffers[i].value.decode('utf-8') for i in range(num_feature)]
wxchan's avatar
wxchan committed
3739

3740
    def feature_importance(self, importance_type='split', iteration=None):
3741
        """Get feature importances.
3742

3743
3744
        Parameters
        ----------
3745
        importance_type : str, optional (default="split")
3746
3747
3748
            How the importance is calculated.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
3749
3750
3751
3752
        iteration : int or None, optional (default=None)
            Limit number of iterations in the feature importance calculation.
            If None, if the best iteration exists, it is used; otherwise, all trees are used.
            If <= 0, all trees are used (no limits).
3753

3754
3755
        Returns
        -------
3756
3757
        result : numpy array
            Array with feature importances.
3758
        """
3759
3760
        if iteration is None:
            iteration = self.best_iteration
3761
        importance_type_int = FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
3762
        result = np.empty(self.num_feature(), dtype=np.float64)
3763
3764
3765
3766
3767
3768
        _safe_call(_LIB.LGBM_BoosterFeatureImportance(
            self.handle,
            ctypes.c_int(iteration),
            ctypes.c_int(importance_type_int),
            result.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
        if importance_type_int == 0:
3769
            return result.astype(np.int32)
3770
3771
        else:
            return result
3772

3773
3774
3775
3776
3777
    def get_split_value_histogram(self, feature, bins=None, xgboost_style=False):
        """Get split value histogram for the specified feature.

        Parameters
        ----------
3778
        feature : int or str
3779
3780
            The feature name or index the histogram is calculated for.
            If int, interpreted as index.
3781
            If str, interpreted as name.
3782

Nikita Titov's avatar
Nikita Titov committed
3783
3784
3785
            .. warning::

                Categorical features are not supported.
3786

3787
        bins : int, str or None, optional (default=None)
3788
3789
3790
            The maximum number of bins.
            If None, or int and > number of unique split values and ``xgboost_style=True``,
            the number of bins equals number of unique split values.
3791
            If str, it should be one from the list of the supported values by ``numpy.histogram()`` function.
3792
3793
3794
3795
3796
3797
3798
3799
3800
3801
3802
3803
3804
3805
3806
3807
3808
        xgboost_style : bool, optional (default=False)
            Whether the returned result should be in the same form as it is in XGBoost.
            If False, the returned value is tuple of 2 numpy arrays as it is in ``numpy.histogram()`` function.
            If True, the returned value is matrix, in which the first column is the right edges of non-empty bins
            and the second one is the histogram values.

        Returns
        -------
        result_tuple : tuple of 2 numpy arrays
            If ``xgboost_style=False``, the values of the histogram of used splitting values for the specified feature
            and the bin edges.
        result_array_like : numpy array or pandas DataFrame (if pandas is installed)
            If ``xgboost_style=True``, the histogram of used splitting values for the specified feature.
        """
        def add(root):
            """Recursively add thresholds."""
            if 'split_index' in root:  # non-leaf
3809
                if feature_names is not None and isinstance(feature, str):
3810
3811
3812
3813
                    split_feature = feature_names[root['split_feature']]
                else:
                    split_feature = root['split_feature']
                if split_feature == feature:
3814
                    if isinstance(root['threshold'], str):
3815
3816
3817
                        raise LightGBMError('Cannot compute split value histogram for the categorical feature')
                    else:
                        values.append(root['threshold'])
3818
3819
3820
3821
3822
3823
3824
3825
3826
3827
                add(root['left_child'])
                add(root['right_child'])

        model = self.dump_model()
        feature_names = model.get('feature_names')
        tree_infos = model['tree_info']
        values = []
        for tree_info in tree_infos:
            add(tree_info['tree_structure'])

3828
        if bins is None or isinstance(bins, int) and xgboost_style:
3829
3830
3831
3832
3833
3834
3835
            n_unique = len(np.unique(values))
            bins = max(min(n_unique, bins) if bins is not None else n_unique, 1)
        hist, bin_edges = np.histogram(values, bins=bins)
        if xgboost_style:
            ret = np.column_stack((bin_edges[1:], hist))
            ret = ret[ret[:, 1] > 0]
            if PANDAS_INSTALLED:
3836
                return pd_DataFrame(ret, columns=['SplitValue', 'Count'])
3837
3838
3839
3840
3841
            else:
                return ret
        else:
            return hist, bin_edges

wxchan's avatar
wxchan committed
3842
    def __inner_eval(self, data_name, data_idx, feval=None):
3843
        """Evaluate training or validation data."""
wxchan's avatar
wxchan committed
3844
        if data_idx >= self.__num_dataset:
3845
            raise ValueError("Data_idx should be smaller than number of dataset")
wxchan's avatar
wxchan committed
3846
3847
3848
        self.__get_eval_info()
        ret = []
        if self.__num_inner_eval > 0:
3849
            result = np.empty(self.__num_inner_eval, dtype=np.float64)
Guolin Ke's avatar
Guolin Ke committed
3850
            tmp_out_len = ctypes.c_int(0)
wxchan's avatar
wxchan committed
3851
3852
            _safe_call(_LIB.LGBM_BoosterGetEval(
                self.handle,
Guolin Ke's avatar
Guolin Ke committed
3853
                ctypes.c_int(data_idx),
wxchan's avatar
wxchan committed
3854
                ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
3855
                result.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
wxchan's avatar
wxchan committed
3856
            if tmp_out_len.value != self.__num_inner_eval:
3857
                raise ValueError("Wrong length of eval results")
3858
            for i in range(self.__num_inner_eval):
3859
3860
                ret.append((data_name, self.__name_inner_eval[i],
                            result[i], self.__higher_better_inner_eval[i]))
3861
3862
        if callable(feval):
            feval = [feval]
wxchan's avatar
wxchan committed
3863
3864
3865
3866
3867
        if feval is not None:
            if data_idx == 0:
                cur_data = self.train_set
            else:
                cur_data = self.valid_sets[data_idx - 1]
3868
3869
3870
3871
3872
3873
3874
3875
3876
            for eval_function in feval:
                if eval_function is None:
                    continue
                feval_ret = eval_function(self.__inner_predict(data_idx), cur_data)
                if isinstance(feval_ret, list):
                    for eval_name, val, is_higher_better in feval_ret:
                        ret.append((data_name, eval_name, val, is_higher_better))
                else:
                    eval_name, val, is_higher_better = feval_ret
wxchan's avatar
wxchan committed
3877
3878
3879
3880
                    ret.append((data_name, eval_name, val, is_higher_better))
        return ret

    def __inner_predict(self, data_idx):
3881
        """Predict for training and validation dataset."""
wxchan's avatar
wxchan committed
3882
        if data_idx >= self.__num_dataset:
3883
            raise ValueError("Data_idx should be smaller than number of dataset")
wxchan's avatar
wxchan committed
3884
3885
3886
3887
3888
        if self.__inner_predict_buffer[data_idx] is None:
            if data_idx == 0:
                n_preds = self.train_set.num_data() * self.__num_class
            else:
                n_preds = self.valid_sets[data_idx - 1].num_data() * self.__num_class
3889
            self.__inner_predict_buffer[data_idx] = np.empty(n_preds, dtype=np.float64)
3890
        # avoid to predict many time in one iteration
wxchan's avatar
wxchan committed
3891
3892
        if not self.__is_predicted_cur_iter[data_idx]:
            tmp_out_len = ctypes.c_int64(0)
Guolin Ke's avatar
Guolin Ke committed
3893
            data_ptr = self.__inner_predict_buffer[data_idx].ctypes.data_as(ctypes.POINTER(ctypes.c_double))
wxchan's avatar
wxchan committed
3894
3895
            _safe_call(_LIB.LGBM_BoosterGetPredict(
                self.handle,
Guolin Ke's avatar
Guolin Ke committed
3896
                ctypes.c_int(data_idx),
wxchan's avatar
wxchan committed
3897
3898
3899
                ctypes.byref(tmp_out_len),
                data_ptr))
            if tmp_out_len.value != len(self.__inner_predict_buffer[data_idx]):
3900
                raise ValueError(f"Wrong length of predict results for data {data_idx}")
wxchan's avatar
wxchan committed
3901
            self.__is_predicted_cur_iter[data_idx] = True
3902
3903
3904
3905
3906
        result = self.__inner_predict_buffer[data_idx]
        if self.__num_class > 1:
            num_data = result.size // self.__num_class
            result = result.reshape(num_data, self.__num_class, order='F')
        return result
wxchan's avatar
wxchan committed
3907
3908

    def __get_eval_info(self):
3909
        """Get inner evaluation count and names."""
wxchan's avatar
wxchan committed
3910
3911
        if self.__need_reload_eval_info:
            self.__need_reload_eval_info = False
Guolin Ke's avatar
Guolin Ke committed
3912
            out_num_eval = ctypes.c_int(0)
3913
            # Get num of inner evals
wxchan's avatar
wxchan committed
3914
3915
3916
3917
3918
            _safe_call(_LIB.LGBM_BoosterGetEvalCounts(
                self.handle,
                ctypes.byref(out_num_eval)))
            self.__num_inner_eval = out_num_eval.value
            if self.__num_inner_eval > 0:
3919
                # Get name of eval metrics
Guolin Ke's avatar
Guolin Ke committed
3920
                tmp_out_len = ctypes.c_int(0)
3921
3922
3923
                reserved_string_buffer_size = 255
                required_string_buffer_size = ctypes.c_size_t(0)
                string_buffers = [
3924
                    ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(self.__num_inner_eval)
3925
                ]
wxchan's avatar
wxchan committed
3926
                ptr_string_buffers = (ctypes.c_char_p * self.__num_inner_eval)(*map(ctypes.addressof, string_buffers))
wxchan's avatar
wxchan committed
3927
3928
                _safe_call(_LIB.LGBM_BoosterGetEvalNames(
                    self.handle,
3929
                    ctypes.c_int(self.__num_inner_eval),
wxchan's avatar
wxchan committed
3930
                    ctypes.byref(tmp_out_len),
3931
                    ctypes.c_size_t(reserved_string_buffer_size),
3932
                    ctypes.byref(required_string_buffer_size),
wxchan's avatar
wxchan committed
3933
3934
                    ptr_string_buffers))
                if self.__num_inner_eval != tmp_out_len.value:
3935
                    raise ValueError("Length of eval names doesn't equal with num_evals")
3936
3937
3938
3939
3940
3941
3942
3943
3944
3945
3946
3947
3948
3949
3950
3951
3952
3953
3954
3955
                actual_string_buffer_size = required_string_buffer_size.value
                # if buffer length is not long enough, reallocate buffers
                if reserved_string_buffer_size < actual_string_buffer_size:
                    string_buffers = [
                        ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(self.__num_inner_eval)
                    ]
                    ptr_string_buffers = (ctypes.c_char_p * self.__num_inner_eval)(*map(ctypes.addressof, string_buffers))
                    _safe_call(_LIB.LGBM_BoosterGetEvalNames(
                        self.handle,
                        ctypes.c_int(self.__num_inner_eval),
                        ctypes.byref(tmp_out_len),
                        ctypes.c_size_t(actual_string_buffer_size),
                        ctypes.byref(required_string_buffer_size),
                        ptr_string_buffers))
                self.__name_inner_eval = [
                    string_buffers[i].value.decode('utf-8') for i in range(self.__num_inner_eval)
                ]
                self.__higher_better_inner_eval = [
                    name.startswith(('auc', 'ndcg@', 'map@', 'average_precision')) for name in self.__name_inner_eval
                ]
3956

wxchan's avatar
wxchan committed
3957
    def attr(self, key):
3958
        """Get attribute string from the Booster.
wxchan's avatar
wxchan committed
3959
3960
3961

        Parameters
        ----------
3962
        key : str
3963
            The name of the attribute.
wxchan's avatar
wxchan committed
3964
3965
3966

        Returns
        -------
3967
        value : str or None
3968
            The attribute value.
Nikita Titov's avatar
Nikita Titov committed
3969
            Returns None if attribute does not exist.
wxchan's avatar
wxchan committed
3970
        """
3971
        return self.__attr.get(key, None)
wxchan's avatar
wxchan committed
3972
3973

    def set_attr(self, **kwargs):
3974
        """Set attributes to the Booster.
wxchan's avatar
wxchan committed
3975
3976
3977
3978

        Parameters
        ----------
        **kwargs
3979
3980
            The attributes to set.
            Setting a value to None deletes an attribute.
Nikita Titov's avatar
Nikita Titov committed
3981
3982
3983
3984

        Returns
        -------
        self : Booster
3985
            Booster with set attributes.
wxchan's avatar
wxchan committed
3986
3987
3988
        """
        for key, value in kwargs.items():
            if value is not None:
3989
                if not isinstance(value, str):
Nikita Titov's avatar
Nikita Titov committed
3990
                    raise ValueError("Only string values are accepted")
wxchan's avatar
wxchan committed
3991
3992
3993
                self.__attr[key] = value
            else:
                self.__attr.pop(key, None)
Nikita Titov's avatar
Nikita Titov committed
3994
        return self