basic.py 168 KB
Newer Older
wxchan's avatar
wxchan committed
1
# coding: utf-8
2
"""Wrapper for C API of LightGBM."""
3
import abc
wxchan's avatar
wxchan committed
4
import ctypes
5
import json
wxchan's avatar
wxchan committed
6
import warnings
7
from collections import OrderedDict
8
from copy import deepcopy
9
from enum import Enum
10
from functools import wraps
11
from os import SEEK_END, environ
12
13
from os.path import getsize
from pathlib import Path
14
from tempfile import NamedTemporaryFile
15
from typing import Any, Callable, Dict, Iterable, List, Optional, Set, Tuple, Union
wxchan's avatar
wxchan committed
16
17
18
19

import numpy as np
import scipy.sparse

20
from .compat import PANDAS_INSTALLED, concat, dt_DataTable, pd_CategoricalDtype, pd_DataFrame, pd_Series
wxchan's avatar
wxchan committed
21
22
from .libpath import find_lib_path

23
24
25
ZERO_THRESHOLD = 1e-35


26
27
28
29
def _is_zero(x: float) -> bool:
    return -ZERO_THRESHOLD <= x <= ZERO_THRESHOLD


30
def _get_sample_count(total_nrow: int, params: str) -> int:
31
32
33
34
35
36
37
38
    sample_cnt = ctypes.c_int(0)
    _safe_call(_LIB.LGBM_GetSampleCount(
        ctypes.c_int32(total_nrow),
        c_str(params),
        ctypes.byref(sample_cnt),
    ))
    return sample_cnt.value

wxchan's avatar
wxchan committed
39

40
41
42
43
44
45
class _MissingType(Enum):
    NONE = 'None'
    NAN = 'NaN'
    ZERO = 'Zero'


46
class _DummyLogger:
47
    def info(self, msg: str) -> None:
48
49
        print(msg)

50
    def warning(self, msg: str) -> None:
51
52
53
        warnings.warn(msg, stacklevel=3)


54
55
56
_LOGGER: Any = _DummyLogger()
_INFO_METHOD_NAME = "info"
_WARNING_METHOD_NAME = "warning"
57
58


59
60
61
def register_logger(
    logger: Any, info_method_name: str = "info", warning_method_name: str = "warning"
) -> None:
62
63
64
65
    """Register custom logger.

    Parameters
    ----------
66
    logger : Any
67
        Custom logger.
68
69
70
71
    info_method_name : str, optional (default="info")
        Method used to log info messages.
    warning_method_name : str, optional (default="warning")
        Method used to log warning messages.
72
    """
73
74
75
76
77
78
79
80
81
    def _has_method(logger: Any, method_name: str) -> bool:
        return callable(getattr(logger, method_name, None))

    if not _has_method(logger, info_method_name) or not _has_method(logger, warning_method_name):
        raise TypeError(
            f"Logger must provide '{info_method_name}' and '{warning_method_name}' method"
        )

    global _LOGGER, _INFO_METHOD_NAME, _WARNING_METHOD_NAME
82
    _LOGGER = logger
83
84
    _INFO_METHOD_NAME = info_method_name
    _WARNING_METHOD_NAME = warning_method_name
85
86


87
def _normalize_native_string(func: Callable[[str], None]) -> Callable[[str], None]:
88
    """Join log messages from native library which come by chunks."""
89
    msg_normalized: List[str] = []
90
91

    @wraps(func)
92
    def wrapper(msg: str) -> None:
93
94
95
96
97
98
99
100
101
102
103
        nonlocal msg_normalized
        if msg.strip() == '':
            msg = ''.join(msg_normalized)
            msg_normalized = []
            return func(msg)
        else:
            msg_normalized.append(msg)

    return wrapper


104
def _log_info(msg: str) -> None:
105
    getattr(_LOGGER, _INFO_METHOD_NAME)(msg)
106
107


108
def _log_warning(msg: str) -> None:
109
    getattr(_LOGGER, _WARNING_METHOD_NAME)(msg)
110
111
112


@_normalize_native_string
113
def _log_native(msg: str) -> None:
114
    getattr(_LOGGER, _INFO_METHOD_NAME)(msg)
115
116


117
def _log_callback(msg: bytes) -> None:
118
    """Redirect logs from native library into Python."""
119
    _log_native(str(msg.decode('utf-8')))
120
121


122
def _load_lib() -> ctypes.CDLL:
123
    """Load LightGBM library."""
wxchan's avatar
wxchan committed
124
125
126
    lib_path = find_lib_path()
    lib = ctypes.cdll.LoadLibrary(lib_path[0])
    lib.LGBM_GetLastError.restype = ctypes.c_char_p
127
128
129
    callback = ctypes.CFUNCTYPE(None, ctypes.c_char_p)
    lib.callback = callback(_log_callback)
    if lib.LGBM_RegisterLogCallback(lib.callback) != 0:
130
        raise LightGBMError(lib.LGBM_GetLastError().decode('utf-8'))
wxchan's avatar
wxchan committed
131
132
    return lib

wxchan's avatar
wxchan committed
133

134
135
136
137
138
139
140
# we don't need lib_lightgbm while building docs
_LIB: ctypes.CDLL
if environ.get('LIGHTGBM_BUILD_DOC', False):
    from unittest.mock import Mock  # isort: skip
    _LIB = Mock(ctypes.CDLL)  # type: ignore
else:
    _LIB = _load_lib()
wxchan's avatar
wxchan committed
141

wxchan's avatar
wxchan committed
142

143
_NUMERIC_TYPES = (int, float, bool)
144
_ArrayLike = Union[List, np.ndarray, pd_Series]
145
146


147
def _safe_call(ret: int) -> None:
148
149
    """Check the return value from C API call.

wxchan's avatar
wxchan committed
150
151
152
    Parameters
    ----------
    ret : int
153
        The return value from C API calls.
wxchan's avatar
wxchan committed
154
155
    """
    if ret != 0:
156
        raise LightGBMError(_LIB.LGBM_GetLastError().decode('utf-8'))
wxchan's avatar
wxchan committed
157

wxchan's avatar
wxchan committed
158

159
def _is_numeric(obj: Any) -> bool:
160
    """Check whether object is a number or not, include numpy number, etc."""
wxchan's avatar
wxchan committed
161
162
163
    try:
        float(obj)
        return True
wxchan's avatar
wxchan committed
164
165
166
    except (TypeError, ValueError):
        # TypeError: obj is not a string or a number
        # ValueError: invalid literal
wxchan's avatar
wxchan committed
167
168
        return False

wxchan's avatar
wxchan committed
169

170
def is_numpy_1d_array(data: Any) -> bool:
171
    """Check whether data is a numpy 1-D array."""
172
    return isinstance(data, np.ndarray) and len(data.shape) == 1
wxchan's avatar
wxchan committed
173

wxchan's avatar
wxchan committed
174

175
def is_numpy_column_array(data: Any) -> bool:
176
177
178
179
180
181
182
    """Check whether data is a column numpy array."""
    if not isinstance(data, np.ndarray):
        return False
    shape = data.shape
    return len(shape) == 2 and shape[1] == 1


183
184
def cast_numpy_array_to_dtype(array, dtype):
    """Cast numpy array to given dtype."""
185
186
187
188
189
    if array.dtype == dtype:
        return array
    return array.astype(dtype=dtype, copy=False)


190
def is_1d_list(data: Any) -> bool:
191
    """Check whether data is a 1-D list."""
192
    return isinstance(data, list) and (not data or _is_numeric(data[0]))
wxchan's avatar
wxchan committed
193

wxchan's avatar
wxchan committed
194

195
196
197
198
199
200
201
202
203
204
def _is_1d_collection(data: Any) -> bool:
    """Check whether data is a 1-D collection."""
    return (
        is_numpy_1d_array(data)
        or is_numpy_column_array(data)
        or is_1d_list(data)
        or isinstance(data, pd_Series)
    )


205
def list_to_1d_numpy(data, dtype=np.float32, name='list'):
206
    """Convert data to numpy 1-D array."""
wxchan's avatar
wxchan committed
207
    if is_numpy_1d_array(data):
208
        return cast_numpy_array_to_dtype(data, dtype)
209
210
211
    elif is_numpy_column_array(data):
        _log_warning('Converting column-vector to 1d array')
        array = data.ravel()
212
        return cast_numpy_array_to_dtype(array, dtype)
wxchan's avatar
wxchan committed
213
214
    elif is_1d_list(data):
        return np.array(data, dtype=dtype, copy=False)
215
    elif isinstance(data, pd_Series):
216
        _check_for_bad_pandas_dtypes(data.to_frame().dtypes)
217
        return np.array(data, dtype=dtype, copy=False)  # SparseArray should be supported as well
wxchan's avatar
wxchan committed
218
    else:
219
220
        raise TypeError(f"Wrong type({type(data).__name__}) for {name}.\n"
                        "It should be list, numpy 1-D array or pandas Series")
wxchan's avatar
wxchan committed
221

wxchan's avatar
wxchan committed
222

223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
def _is_numpy_2d_array(data: Any) -> bool:
    """Check whether data is a numpy 2-D array."""
    return isinstance(data, np.ndarray) and len(data.shape) == 2 and data.shape[1] > 1


def _is_2d_list(data: Any) -> bool:
    """Check whether data is a 2-D list."""
    return isinstance(data, list) and len(data) > 0 and is_1d_list(data[0])


def _is_2d_collection(data: Any) -> bool:
    """Check whether data is a 2-D collection."""
    return (
        _is_numpy_2d_array(data)
        or _is_2d_list(data)
        or isinstance(data, pd_DataFrame)
    )


def _data_to_2d_numpy(data: Any, dtype: type = np.float32, name: str = 'list') -> np.ndarray:
    """Convert data to numpy 2-D array."""
    if _is_numpy_2d_array(data):
        return cast_numpy_array_to_dtype(data, dtype)
    if _is_2d_list(data):
        return np.array(data, dtype=dtype)
    if isinstance(data, pd_DataFrame):
249
        _check_for_bad_pandas_dtypes(data.dtypes)
250
251
252
253
254
        return cast_numpy_array_to_dtype(data.values, dtype)
    raise TypeError(f"Wrong type({type(data).__name__}) for {name}.\n"
                    "It should be list of lists, numpy 2-D array or pandas DataFrame")


255
def cfloat32_array_to_numpy(cptr: ctypes.POINTER, length: int) -> np.ndarray:
256
    """Convert a ctypes float pointer array to a numpy array."""
wxchan's avatar
wxchan committed
257
    if isinstance(cptr, ctypes.POINTER(ctypes.c_float)):
258
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
wxchan's avatar
wxchan committed
259
    else:
260
        raise RuntimeError('Expected float pointer')
wxchan's avatar
wxchan committed
261

Guolin Ke's avatar
Guolin Ke committed
262

263
def cfloat64_array_to_numpy(cptr: ctypes.POINTER, length: int) -> np.ndarray:
264
    """Convert a ctypes double pointer array to a numpy array."""
Guolin Ke's avatar
Guolin Ke committed
265
    if isinstance(cptr, ctypes.POINTER(ctypes.c_double)):
266
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
Guolin Ke's avatar
Guolin Ke committed
267
268
269
    else:
        raise RuntimeError('Expected double pointer')

wxchan's avatar
wxchan committed
270

271
def cint32_array_to_numpy(cptr: ctypes.POINTER, length: int) -> np.ndarray:
272
    """Convert a ctypes int pointer array to a numpy array."""
wxchan's avatar
wxchan committed
273
    if isinstance(cptr, ctypes.POINTER(ctypes.c_int32)):
274
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
wxchan's avatar
wxchan committed
275
    else:
276
277
278
        raise RuntimeError('Expected int32 pointer')


279
def cint64_array_to_numpy(cptr: ctypes.POINTER, length: int) -> np.ndarray:
280
281
    """Convert a ctypes int pointer array to a numpy array."""
    if isinstance(cptr, ctypes.POINTER(ctypes.c_int64)):
282
        return np.ctypeslib.as_array(cptr, shape=(length,)).copy()
283
284
    else:
        raise RuntimeError('Expected int64 pointer')
wxchan's avatar
wxchan committed
285

wxchan's avatar
wxchan committed
286

287
def c_str(string: str) -> ctypes.c_char_p:
288
    """Convert a Python string to C string."""
wxchan's avatar
wxchan committed
289
290
    return ctypes.c_char_p(string.encode('utf-8'))

wxchan's avatar
wxchan committed
291

292
def c_array(ctype: type, values: List[Any]) -> ctypes.Array:
293
    """Convert a Python array to C array."""
wxchan's avatar
wxchan committed
294
295
    return (ctype * len(values))(*values)

wxchan's avatar
wxchan committed
296

297
def json_default_with_numpy(obj: Any) -> Any:
298
299
300
301
302
303
304
305
306
    """Convert numpy classes to JSON serializable objects."""
    if isinstance(obj, (np.integer, np.floating, np.bool_)):
        return obj.item()
    elif isinstance(obj, np.ndarray):
        return obj.tolist()
    else:
        return obj


307
def param_dict_to_str(data: Optional[Dict[str, Any]]) -> str:
308
    """Convert Python dictionary to string, which is passed to C API."""
309
    if data is None or not data:
wxchan's avatar
wxchan committed
310
311
312
        return ""
    pairs = []
    for key, val in data.items():
313
        if isinstance(val, (list, tuple, set)) or is_numpy_1d_array(val):
314
315
            def to_string(x):
                if isinstance(x, list):
316
                    return f"[{','.join(map(str, x))}]"
317
318
                else:
                    return str(x)
319
            pairs.append(f"{key}={','.join(map(to_string, val))}")
320
        elif isinstance(val, (str, Path, _NUMERIC_TYPES)) or _is_numeric(val):
321
            pairs.append(f"{key}={val}")
322
        elif val is not None:
323
            raise TypeError(f'Unknown type of parameter:{key}, got:{type(val).__name__}')
wxchan's avatar
wxchan committed
324
    return ' '.join(pairs)
325

wxchan's avatar
wxchan committed
326

327
class _TempFile:
328
329
    """Proxy class to workaround errors on Windows."""

330
331
332
    def __enter__(self):
        with NamedTemporaryFile(prefix="lightgbm_tmp_", delete=True) as f:
            self.name = f.name
333
            self.path = Path(self.name)
334
        return self
wxchan's avatar
wxchan committed
335

336
    def __exit__(self, exc_type, exc_val, exc_tb):
337
338
        if self.path.is_file():
            self.path.unlink()
339

wxchan's avatar
wxchan committed
340

341
class LightGBMError(Exception):
342
343
    """Error thrown by LightGBM."""

344
345
346
    pass


347
348
349
350
351
352
353
354
# DeprecationWarning is not shown by default, so let's create our own with higher level
class LGBMDeprecationWarning(UserWarning):
    """Custom deprecation warning."""

    pass


class _ConfigAliases:
355
356
357
358
    # lazy evaluation to allow import without dynamic library, e.g., for docs generation
    aliases = None

    @staticmethod
359
    def _get_all_param_aliases() -> Dict[str, List[str]]:
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
        buffer_len = 1 << 20
        tmp_out_len = ctypes.c_int64(0)
        string_buffer = ctypes.create_string_buffer(buffer_len)
        ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
        _safe_call(_LIB.LGBM_DumpParamAliases(
            ctypes.c_int64(buffer_len),
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
        # if buffer length is not long enough, re-allocate a buffer
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
            ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
            _safe_call(_LIB.LGBM_DumpParamAliases(
                ctypes.c_int64(actual_len),
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
        aliases = json.loads(
            string_buffer.value.decode('utf-8'),
379
            object_hook=lambda obj: {k: [k] + v for k, v in obj.items()}
380
381
        )
        return aliases
382
383

    @classmethod
384
385
386
    def get(cls, *args) -> Set[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
387
388
        ret = set()
        for i in args:
389
            ret.update(cls.get_sorted(i))
390
391
        return ret

392
393
394
395
396
397
    @classmethod
    def get_sorted(cls, name: str) -> List[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
        return cls.aliases.get(name, [name])

398
    @classmethod
399
400
401
    def get_by_alias(cls, *args) -> Set[str]:
        if cls.aliases is None:
            cls.aliases = cls._get_all_param_aliases()
402
403
404
405
        ret = set(args)
        for arg in args:
            for aliases in cls.aliases.values():
                if arg in aliases:
406
                    ret.update(aliases)
407
408
409
                    break
        return ret

410

411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
def _choose_param_value(main_param_name: str, params: Dict[str, Any], default_value: Any) -> Dict[str, Any]:
    """Get a single parameter value, accounting for aliases.

    Parameters
    ----------
    main_param_name : str
        Name of the main parameter to get a value for. One of the keys of ``_ConfigAliases``.
    params : dict
        Dictionary of LightGBM parameters.
    default_value : Any
        Default value to use for the parameter, if none is found in ``params``.

    Returns
    -------
    params : dict
        A ``params`` dict with exactly one value for ``main_param_name``, and all aliases ``main_param_name`` removed.
        If both ``main_param_name`` and one or more aliases for it are found, the value of ``main_param_name`` will be preferred.
    """
    # avoid side effects on passed-in parameters
    params = deepcopy(params)

432
433
    aliases = _ConfigAliases.get_sorted(main_param_name)
    aliases = [a for a in aliases if a != main_param_name]
434
435

    # if main_param_name was provided, keep that value and remove all aliases
436
    if main_param_name in params.keys():
437
438
439
        for param in aliases:
            params.pop(param, None)
        return params
440

441
442
443
444
445
    # if main param name was not found, search for an alias
    for param in aliases:
        if param in params.keys():
            params[main_param_name] = params[param]
            break
446

447
448
449
450
451
452
453
    if main_param_name in params.keys():
        for param in aliases:
            params.pop(param, None)
        return params

    # neither of main_param_name, aliases were found
    params[main_param_name] = default_value
454
455
456
457

    return params


458
459
MAX_INT32 = (1 << 31) - 1

460
"""Macro definition of data type in C API of LightGBM"""
wxchan's avatar
wxchan committed
461
462
463
464
C_API_DTYPE_FLOAT32 = 0
C_API_DTYPE_FLOAT64 = 1
C_API_DTYPE_INT32 = 2
C_API_DTYPE_INT64 = 3
Guolin Ke's avatar
Guolin Ke committed
465

466
"""Matrix is row major in Python"""
wxchan's avatar
wxchan committed
467
468
C_API_IS_ROW_MAJOR = 1

469
"""Macro definition of prediction type in C API of LightGBM"""
wxchan's avatar
wxchan committed
470
471
472
C_API_PREDICT_NORMAL = 0
C_API_PREDICT_RAW_SCORE = 1
C_API_PREDICT_LEAF_INDEX = 2
473
C_API_PREDICT_CONTRIB = 3
wxchan's avatar
wxchan committed
474

475
476
477
478
"""Macro definition of sparse matrix type"""
C_API_MATRIX_TYPE_CSR = 0
C_API_MATRIX_TYPE_CSC = 1

479
480
481
482
"""Macro definition of feature importance type"""
C_API_FEATURE_IMPORTANCE_SPLIT = 0
C_API_FEATURE_IMPORTANCE_GAIN = 1

483
"""Data type of data field"""
wxchan's avatar
wxchan committed
484
485
FIELD_TYPE_MAPPER = {"label": C_API_DTYPE_FLOAT32,
                     "weight": C_API_DTYPE_FLOAT32,
Guolin Ke's avatar
Guolin Ke committed
486
                     "init_score": C_API_DTYPE_FLOAT64,
487
                     "group": C_API_DTYPE_INT32}
wxchan's avatar
wxchan committed
488

489
490
491
492
"""String name to int feature importance type mapper"""
FEATURE_IMPORTANCE_TYPE_MAPPER = {"split": C_API_FEATURE_IMPORTANCE_SPLIT,
                                  "gain": C_API_FEATURE_IMPORTANCE_GAIN}

wxchan's avatar
wxchan committed
493

494
def convert_from_sliced_object(data):
495
    """Fix the memory of multi-dimensional sliced object."""
496
    if isinstance(data, np.ndarray) and isinstance(data.base, np.ndarray):
497
        if not data.flags.c_contiguous:
498
499
            _log_warning("Usage of np.ndarray subset (sliced data) is not recommended "
                         "due to it will double the peak memory cost in LightGBM.")
500
501
502
503
            return np.copy(data)
    return data


wxchan's avatar
wxchan committed
504
def c_float_array(data):
505
    """Get pointer of float numpy array / list."""
wxchan's avatar
wxchan committed
506
507
508
    if is_1d_list(data):
        data = np.array(data, copy=False)
    if is_numpy_1d_array(data):
509
510
        data = convert_from_sliced_object(data)
        assert data.flags.c_contiguous
wxchan's avatar
wxchan committed
511
512
513
514
515
516
517
        if data.dtype == np.float32:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_float))
            type_data = C_API_DTYPE_FLOAT32
        elif data.dtype == np.float64:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_double))
            type_data = C_API_DTYPE_FLOAT64
        else:
518
            raise TypeError(f"Expected np.float32 or np.float64, met type({data.dtype})")
wxchan's avatar
wxchan committed
519
    else:
520
        raise TypeError(f"Unknown type({type(data).__name__})")
521
    return (ptr_data, type_data, data)  # return `data` to avoid the temporary copy is freed
wxchan's avatar
wxchan committed
522

wxchan's avatar
wxchan committed
523

wxchan's avatar
wxchan committed
524
def c_int_array(data):
525
    """Get pointer of int numpy array / list."""
wxchan's avatar
wxchan committed
526
527
528
    if is_1d_list(data):
        data = np.array(data, copy=False)
    if is_numpy_1d_array(data):
529
530
        data = convert_from_sliced_object(data)
        assert data.flags.c_contiguous
wxchan's avatar
wxchan committed
531
532
533
534
535
536
537
        if data.dtype == np.int32:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_int32))
            type_data = C_API_DTYPE_INT32
        elif data.dtype == np.int64:
            ptr_data = data.ctypes.data_as(ctypes.POINTER(ctypes.c_int64))
            type_data = C_API_DTYPE_INT64
        else:
538
            raise TypeError(f"Expected np.int32 or np.int64, met type({data.dtype})")
wxchan's avatar
wxchan committed
539
    else:
540
        raise TypeError(f"Unknown type({type(data).__name__})")
541
    return (ptr_data, type_data, data)  # return `data` to avoid the temporary copy is freed
wxchan's avatar
wxchan committed
542

wxchan's avatar
wxchan committed
543

544
def _check_for_bad_pandas_dtypes(pandas_dtypes_series):
545
546
547
548
549
550
551
552
    float128 = getattr(np, 'float128', type(None))

    def is_allowed_numpy_dtype(dtype):
        return (
            issubclass(dtype, (np.integer, np.floating, np.bool_))
            and not issubclass(dtype, (np.timedelta64, float128))
        )

553
554
555
556
557
558
559
560
    bad_pandas_dtypes = [
        f'{column_name}: {pandas_dtype}'
        for column_name, pandas_dtype in pandas_dtypes_series.iteritems()
        if not is_allowed_numpy_dtype(pandas_dtype.type)
    ]
    if bad_pandas_dtypes:
        raise ValueError('pandas dtypes must be int, float or bool.\n'
                         f'Fields with bad pandas dtypes: {", ".join(bad_pandas_dtypes)}')
561
562


563
def _data_from_pandas(data, feature_name, categorical_feature, pandas_categorical):
564
    if isinstance(data, pd_DataFrame):
565
566
        if len(data.shape) != 2 or data.shape[0] < 1:
            raise ValueError('Input data must be 2 dimensional and non empty.')
567
        if feature_name == 'auto' or feature_name is None:
568
            data = data.rename(columns=str, copy=False)
569
        cat_cols = [col for col, dtype in zip(data.columns, data.dtypes) if isinstance(dtype, pd_CategoricalDtype)]
570
        cat_cols_not_ordered = [col for col in cat_cols if not data[col].cat.ordered]
571
572
573
574
575
        if pandas_categorical is None:  # train dataset
            pandas_categorical = [list(data[col].cat.categories) for col in cat_cols]
        else:
            if len(cat_cols) != len(pandas_categorical):
                raise ValueError('train and valid dataset categorical_feature do not match.')
576
            for col, category in zip(cat_cols, pandas_categorical):
577
578
                if list(data[col].cat.categories) != list(category):
                    data[col] = data[col].cat.set_categories(category)
579
        if len(cat_cols):  # cat_cols is list
580
            data = data.copy(deep=False)  # not alter origin DataFrame
581
            data[cat_cols] = data[cat_cols].apply(lambda x: x.cat.codes).replace({-1: np.nan})
582
583
584
        if categorical_feature is not None:
            if feature_name is None:
                feature_name = list(data.columns)
585
            if categorical_feature == 'auto':  # use cat cols from DataFrame
586
                categorical_feature = cat_cols_not_ordered
587
588
            else:  # use cat cols specified by user
                categorical_feature = list(categorical_feature)
589
590
        if feature_name == 'auto':
            feature_name = list(data.columns)
591
        _check_for_bad_pandas_dtypes(data.dtypes)
592
593
594
595
        df_dtypes = [dtype.type for dtype in data.dtypes]
        df_dtypes.append(np.float32)  # so that the target dtype considers floats
        target_dtype = np.find_common_type(df_dtypes, [])
        data = data.astype(target_dtype, copy=False).values
596
597
598
599
600
601
    else:
        if feature_name == 'auto':
            feature_name = None
        if categorical_feature == 'auto':
            categorical_feature = None
    return data, feature_name, categorical_feature, pandas_categorical
602
603
604


def _label_from_pandas(label):
605
    if isinstance(label, pd_DataFrame):
606
607
        if len(label.columns) > 1:
            raise ValueError('DataFrame for label cannot have multiple columns')
608
        _check_for_bad_pandas_dtypes(label.dtypes)
609
        label = np.ravel(label.values.astype(np.float32, copy=False))
610
611
612
    return label


613
def _dump_pandas_categorical(pandas_categorical, file_name=None):
614
615
    categorical_json = json.dumps(pandas_categorical, default=json_default_with_numpy)
    pandas_str = f'\npandas_categorical:{categorical_json}\n'
616
617
618
619
620
621
    if file_name is not None:
        with open(file_name, 'a') as f:
            f.write(pandas_str)
    return pandas_str


622
623
624
625
def _load_pandas_categorical(
    file_name: Optional[Union[str, Path]] = None,
    model_str: Optional[str] = None
) -> Optional[str]:
626
627
    pandas_key = 'pandas_categorical:'
    offset = -len(pandas_key)
628
    if file_name is not None:
629
        max_offset = -getsize(file_name)
630
631
632
633
        with open(file_name, 'rb') as f:
            while True:
                if offset < max_offset:
                    offset = max_offset
634
                f.seek(offset, SEEK_END)
635
636
637
638
                lines = f.readlines()
                if len(lines) >= 2:
                    break
                offset *= 2
639
        last_line = lines[-1].decode('utf-8').strip()
640
        if not last_line.startswith(pandas_key):
641
            last_line = lines[-2].decode('utf-8').strip()
642
    elif model_str is not None:
643
644
645
646
647
648
        idx = model_str.rfind('\n', 0, offset)
        last_line = model_str[idx:].strip()
    if last_line.startswith(pandas_key):
        return json.loads(last_line[len(pandas_key):])
    else:
        return None
649
650


651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
class Sequence(abc.ABC):
    """
    Generic data access interface.

    Object should support the following operations:

    .. code-block::

        # Get total row number.
        >>> len(seq)
        # Random access by row index. Used for data sampling.
        >>> seq[10]
        # Range data access. Used to read data in batch when constructing Dataset.
        >>> seq[0:100]
        # Optionally specify batch_size to control range data read size.
        >>> seq.batch_size

    - With random access, **data sampling does not need to go through all data**.
    - With range data access, there's **no need to read all data into memory thus reduce memory usage**.

671
672
    .. versionadded:: 3.3.0

673
674
675
676
677
678
679
680
681
    Attributes
    ----------
    batch_size : int
        Default size of a batch.
    """

    batch_size = 4096  # Defaults to read 4K rows in each batch.

    @abc.abstractmethod
682
    def __getitem__(self, idx: Union[int, slice, List[int]]) -> np.ndarray:
683
684
685
686
687
688
689
        """Return data for given row index.

        A basic implementation should look like this:

        .. code-block:: python

            if isinstance(idx, numbers.Integral):
690
                return self._get_one_line(idx)
691
            elif isinstance(idx, slice):
692
693
                return np.stack([self._get_one_line(i) for i in range(idx.start, idx.stop)])
            elif isinstance(idx, list):
694
                # Only required if using ``Dataset.subset()``.
695
                return np.array([self._get_one_line(i) for i in idx])
696
            else:
697
                raise TypeError(f"Sequence index must be integer, slice or list, got {type(idx).__name__}")
698
699
700

        Parameters
        ----------
701
        idx : int, slice[int], list[int]
702
703
704
705
            Item index.

        Returns
        -------
706
        result : numpy 1-D array or numpy 2-D array
707
            1-D array if idx is int, 2-D array if idx is slice or list.
708
709
710
711
712
713
714
715
716
        """
        raise NotImplementedError("Sub-classes of lightgbm.Sequence must implement __getitem__()")

    @abc.abstractmethod
    def __len__(self) -> int:
        """Return row count of this sequence."""
        raise NotImplementedError("Sub-classes of lightgbm.Sequence must implement __len__()")


717
class _InnerPredictor:
718
719
720
721
722
    """_InnerPredictor of LightGBM.

    Not exposed to user.
    Used only for prediction, usually used for continued training.

Nikita Titov's avatar
Nikita Titov committed
723
724
725
    .. note::

        Can be converted from Booster, but cannot be converted to Booster.
Guolin Ke's avatar
Guolin Ke committed
726
    """
727

728
729
730
731
732
733
    def __init__(
        self,
        model_file: Optional[Union[str, Path]] = None,
        booster_handle: Optional[ctypes.c_void_p] = None,
        pred_parameter: Optional[Dict[str, Any]] = None
    ):
734
        """Initialize the _InnerPredictor.
wxchan's avatar
wxchan committed
735
736
737

        Parameters
        ----------
738
        model_file : str, pathlib.Path or None, optional (default=None)
wxchan's avatar
wxchan committed
739
            Path to the model file.
740
741
742
        booster_handle : object or None, optional (default=None)
            Handle of Booster.
        pred_parameter: dict or None, optional (default=None)
743
            Other parameters for the prediction.
wxchan's avatar
wxchan committed
744
745
746
747
748
        """
        self.handle = ctypes.c_void_p()
        self.__is_manage_handle = True
        if model_file is not None:
            """Prediction task"""
Guolin Ke's avatar
Guolin Ke committed
749
            out_num_iterations = ctypes.c_int(0)
wxchan's avatar
wxchan committed
750
            _safe_call(_LIB.LGBM_BoosterCreateFromModelfile(
751
                c_str(str(model_file)),
wxchan's avatar
wxchan committed
752
753
                ctypes.byref(out_num_iterations),
                ctypes.byref(self.handle)))
Guolin Ke's avatar
Guolin Ke committed
754
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
755
756
757
758
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
                self.handle,
                ctypes.byref(out_num_class)))
            self.num_class = out_num_class.value
759
            self.num_total_iteration = out_num_iterations.value
760
            self.pandas_categorical = _load_pandas_categorical(file_name=model_file)
wxchan's avatar
wxchan committed
761
        elif booster_handle is not None:
Guolin Ke's avatar
Guolin Ke committed
762
            self.__is_manage_handle = False
wxchan's avatar
wxchan committed
763
            self.handle = booster_handle
Guolin Ke's avatar
Guolin Ke committed
764
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
765
766
767
768
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
                self.handle,
                ctypes.byref(out_num_class)))
            self.num_class = out_num_class.value
769
            self.num_total_iteration = self.current_iteration()
770
            self.pandas_categorical = None
wxchan's avatar
wxchan committed
771
        else:
772
            raise TypeError('Need model_file or booster_handle to create a predictor')
wxchan's avatar
wxchan committed
773

774
775
        pred_parameter = {} if pred_parameter is None else pred_parameter
        self.pred_parameter = param_dict_to_str(pred_parameter)
cbecker's avatar
cbecker committed
776

777
    def __del__(self) -> None:
778
779
780
781
782
        try:
            if self.__is_manage_handle:
                _safe_call(_LIB.LGBM_BoosterFree(self.handle))
        except AttributeError:
            pass
wxchan's avatar
wxchan committed
783

784
    def __getstate__(self) -> Dict[str, Any]:
785
786
787
788
        this = self.__dict__.copy()
        this.pop('handle', None)
        return this

789
790
791
792
793
794
795
796
797
798
799
    def predict(
        self,
        data,
        start_iteration: int = 0,
        num_iteration: int = -1,
        raw_score: bool = False,
        pred_leaf: bool = False,
        pred_contrib: bool = False,
        data_has_header: bool = False,
        validate_features: bool = False
    ):
800
        """Predict logic.
wxchan's avatar
wxchan committed
801
802
803

        Parameters
        ----------
804
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
805
            Data source for prediction.
806
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
807
808
        start_iteration : int, optional (default=0)
            Start index of the iteration to predict.
809
810
811
812
813
814
815
816
817
818
819
        num_iteration : int, optional (default=-1)
            Iteration used for prediction.
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        pred_leaf : bool, optional (default=False)
            Whether to predict leaf index.
        pred_contrib : bool, optional (default=False)
            Whether to predict feature contributions.
        data_has_header : bool, optional (default=False)
            Whether data has header.
            Used only for txt data.
820
821
822
        validate_features : bool, optional (default=False)
            If True, ensure that the features used to predict match the ones used to train.
            Used only if data is pandas DataFrame.
wxchan's avatar
wxchan committed
823
824
825

        Returns
        -------
826
        result : numpy array, scipy.sparse or list of scipy.sparse
827
            Prediction result.
828
            Can be sparse or a list of sparse objects (each element represents predictions for one class) for feature contributions (when ``pred_contrib=True``).
wxchan's avatar
wxchan committed
829
        """
wxchan's avatar
wxchan committed
830
        if isinstance(data, Dataset):
831
            raise TypeError("Cannot use Dataset instance for prediction, please use raw data instead")
832
833
834
835
836
837
838
839
840
841
842
        elif isinstance(data, pd_DataFrame) and validate_features:
            data_names = [str(x) for x in data.columns]
            ptr_names = (ctypes.c_char_p * len(data_names))()
            ptr_names[:] = [x.encode('utf-8') for x in data_names]
            _safe_call(
                _LIB.LGBM_BoosterValidateFeatureNames(
                    self.handle,
                    ptr_names,
                    ctypes.c_int(len(data_names)),
                )
            )
843
        data = _data_from_pandas(data, None, None, self.pandas_categorical)[0]
wxchan's avatar
wxchan committed
844
845
846
847
848
        predict_type = C_API_PREDICT_NORMAL
        if raw_score:
            predict_type = C_API_PREDICT_RAW_SCORE
        if pred_leaf:
            predict_type = C_API_PREDICT_LEAF_INDEX
849
850
        if pred_contrib:
            predict_type = C_API_PREDICT_CONTRIB
wxchan's avatar
wxchan committed
851
        int_data_has_header = 1 if data_has_header else 0
cbecker's avatar
cbecker committed
852

853
        if isinstance(data, (str, Path)):
854
            with _TempFile() as f:
wxchan's avatar
wxchan committed
855
856
                _safe_call(_LIB.LGBM_BoosterPredictForFile(
                    self.handle,
857
                    c_str(str(data)),
Guolin Ke's avatar
Guolin Ke committed
858
859
                    ctypes.c_int(int_data_has_header),
                    ctypes.c_int(predict_type),
860
                    ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
861
                    ctypes.c_int(num_iteration),
862
                    c_str(self.pred_parameter),
wxchan's avatar
wxchan committed
863
                    c_str(f.name)))
864
865
                preds = np.loadtxt(f.name, dtype=np.float64)
                nrow = preds.shape[0]
wxchan's avatar
wxchan committed
866
        elif isinstance(data, scipy.sparse.csr_matrix):
867
            preds, nrow = self.__pred_for_csr(data, start_iteration, num_iteration, predict_type)
Guolin Ke's avatar
Guolin Ke committed
868
        elif isinstance(data, scipy.sparse.csc_matrix):
869
            preds, nrow = self.__pred_for_csc(data, start_iteration, num_iteration, predict_type)
wxchan's avatar
wxchan committed
870
        elif isinstance(data, np.ndarray):
871
            preds, nrow = self.__pred_for_np2d(data, start_iteration, num_iteration, predict_type)
872
873
874
        elif isinstance(data, list):
            try:
                data = np.array(data)
875
            except BaseException:
876
                raise ValueError('Cannot convert data list to numpy array.')
877
            preds, nrow = self.__pred_for_np2d(data, start_iteration, num_iteration, predict_type)
878
        elif isinstance(data, dt_DataTable):
879
            preds, nrow = self.__pred_for_np2d(data.to_numpy(), start_iteration, num_iteration, predict_type)
wxchan's avatar
wxchan committed
880
881
        else:
            try:
882
                _log_warning('Converting data to scipy sparse matrix.')
wxchan's avatar
wxchan committed
883
                csr = scipy.sparse.csr_matrix(data)
884
            except BaseException:
885
                raise TypeError(f'Cannot predict data for type {type(data).__name__}')
886
            preds, nrow = self.__pred_for_csr(csr, start_iteration, num_iteration, predict_type)
wxchan's avatar
wxchan committed
887
888
        if pred_leaf:
            preds = preds.astype(np.int32)
889
        is_sparse = scipy.sparse.issparse(preds) or isinstance(preds, list)
890
        if not is_sparse and preds.size != nrow:
wxchan's avatar
wxchan committed
891
            if preds.size % nrow == 0:
892
                preds = preds.reshape(nrow, -1)
wxchan's avatar
wxchan committed
893
            else:
894
                raise ValueError(f'Length of predict result ({preds.size}) cannot be divide nrow ({nrow})')
wxchan's avatar
wxchan committed
895
896
        return preds

897
    def __get_num_preds(self, start_iteration, num_iteration, nrow, predict_type):
898
        """Get size of prediction result."""
899
        if nrow > MAX_INT32:
900
            raise LightGBMError('LightGBM cannot perform prediction for data '
901
                                f'with number of rows greater than MAX_INT32 ({MAX_INT32}).\n'
902
                                'You can split your data into chunks '
903
                                'and then concatenate predictions for them')
Guolin Ke's avatar
Guolin Ke committed
904
905
906
        n_preds = ctypes.c_int64(0)
        _safe_call(_LIB.LGBM_BoosterCalcNumPredict(
            self.handle,
Guolin Ke's avatar
Guolin Ke committed
907
908
            ctypes.c_int(nrow),
            ctypes.c_int(predict_type),
909
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
910
            ctypes.c_int(num_iteration),
Guolin Ke's avatar
Guolin Ke committed
911
912
            ctypes.byref(n_preds)))
        return n_preds.value
wxchan's avatar
wxchan committed
913

914
    def __pred_for_np2d(self, mat, start_iteration, num_iteration, predict_type):
915
        """Predict for a 2-D numpy matrix."""
wxchan's avatar
wxchan committed
916
        if len(mat.shape) != 2:
917
            raise ValueError('Input numpy.ndarray or list must be 2 dimensional')
wxchan's avatar
wxchan committed
918

919
        def inner_predict(mat, start_iteration, num_iteration, predict_type, preds=None):
920
921
            if mat.dtype == np.float32 or mat.dtype == np.float64:
                data = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
922
            else:  # change non-float data to float data, need to copy
923
924
                data = np.array(mat.reshape(mat.size), dtype=np.float32)
            ptr_data, type_ptr_data, _ = c_float_array(data)
925
            n_preds = self.__get_num_preds(start_iteration, num_iteration, mat.shape[0], predict_type)
926
            if preds is None:
927
                preds = np.empty(n_preds, dtype=np.float64)
928
929
930
931
932
933
934
            elif len(preds.shape) != 1 or len(preds) != n_preds:
                raise ValueError("Wrong length of pre-allocated predict array")
            out_num_preds = ctypes.c_int64(0)
            _safe_call(_LIB.LGBM_BoosterPredictForMat(
                self.handle,
                ptr_data,
                ctypes.c_int(type_ptr_data),
935
936
                ctypes.c_int32(mat.shape[0]),
                ctypes.c_int32(mat.shape[1]),
937
938
                ctypes.c_int(C_API_IS_ROW_MAJOR),
                ctypes.c_int(predict_type),
939
                ctypes.c_int(start_iteration),
940
941
942
943
944
945
946
947
948
949
950
951
                ctypes.c_int(num_iteration),
                c_str(self.pred_parameter),
                ctypes.byref(out_num_preds),
                preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
            if n_preds != out_num_preds.value:
                raise ValueError("Wrong length for predict results")
            return preds, mat.shape[0]

        nrow = mat.shape[0]
        if nrow > MAX_INT32:
            sections = np.arange(start=MAX_INT32, stop=nrow, step=MAX_INT32)
            # __get_num_preds() cannot work with nrow > MAX_INT32, so calculate overall number of predictions piecemeal
952
            n_preds = [self.__get_num_preds(start_iteration, num_iteration, i, predict_type) for i in np.diff([0] + list(sections) + [nrow])]
953
            n_preds_sections = np.array([0] + n_preds, dtype=np.intp).cumsum()
954
            preds = np.empty(sum(n_preds), dtype=np.float64)
955
956
            for chunk, (start_idx_pred, end_idx_pred) in zip(np.array_split(mat, sections),
                                                             zip(n_preds_sections, n_preds_sections[1:])):
957
                # avoid memory consumption by arrays concatenation operations
958
                inner_predict(chunk, start_iteration, num_iteration, predict_type, preds[start_idx_pred:end_idx_pred])
959
            return preds, nrow
wxchan's avatar
wxchan committed
960
        else:
961
            return inner_predict(mat, start_iteration, num_iteration, predict_type)
wxchan's avatar
wxchan committed
962

963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
    def __create_sparse_native(self, cs, out_shape, out_ptr_indptr, out_ptr_indices, out_ptr_data,
                               indptr_type, data_type, is_csr=True):
        # create numpy array from output arrays
        data_indices_len = out_shape[0]
        indptr_len = out_shape[1]
        if indptr_type == C_API_DTYPE_INT32:
            out_indptr = cint32_array_to_numpy(out_ptr_indptr, indptr_len)
        elif indptr_type == C_API_DTYPE_INT64:
            out_indptr = cint64_array_to_numpy(out_ptr_indptr, indptr_len)
        else:
            raise TypeError("Expected int32 or int64 type for indptr")
        if data_type == C_API_DTYPE_FLOAT32:
            out_data = cfloat32_array_to_numpy(out_ptr_data, data_indices_len)
        elif data_type == C_API_DTYPE_FLOAT64:
            out_data = cfloat64_array_to_numpy(out_ptr_data, data_indices_len)
        else:
            raise TypeError("Expected float32 or float64 type for data")
        out_indices = cint32_array_to_numpy(out_ptr_indices, data_indices_len)
        # break up indptr based on number of rows (note more than one matrix in multiclass case)
        per_class_indptr_shape = cs.indptr.shape[0]
        # for CSC there is extra column added
        if not is_csr:
            per_class_indptr_shape += 1
        out_indptr_arrays = np.split(out_indptr, out_indptr.shape[0] / per_class_indptr_shape)
        # reformat output into a csr or csc matrix or list of csr or csc matrices
        cs_output_matrices = []
        offset = 0
        for cs_indptr in out_indptr_arrays:
            matrix_indptr_len = cs_indptr[cs_indptr.shape[0] - 1]
            cs_indices = out_indices[offset + cs_indptr[0]:offset + matrix_indptr_len]
            cs_data = out_data[offset + cs_indptr[0]:offset + matrix_indptr_len]
            offset += matrix_indptr_len
            # same shape as input csr or csc matrix except extra column for expected value
            cs_shape = [cs.shape[0], cs.shape[1] + 1]
            # note: make sure we copy data as it will be deallocated next
            if is_csr:
                cs_output_matrices.append(scipy.sparse.csr_matrix((cs_data, cs_indices, cs_indptr), cs_shape))
            else:
                cs_output_matrices.append(scipy.sparse.csc_matrix((cs_data, cs_indices, cs_indptr), cs_shape))
        # free the temporary native indptr, indices, and data
        _safe_call(_LIB.LGBM_BoosterFreePredictSparse(out_ptr_indptr, out_ptr_indices, out_ptr_data,
                                                      ctypes.c_int(indptr_type), ctypes.c_int(data_type)))
        if len(cs_output_matrices) == 1:
            return cs_output_matrices[0]
        return cs_output_matrices

1009
    def __pred_for_csr(self, csr, start_iteration, num_iteration, predict_type):
1010
        """Predict for a CSR data."""
1011
        def inner_predict(csr, start_iteration, num_iteration, predict_type, preds=None):
1012
            nrow = len(csr.indptr) - 1
1013
            n_preds = self.__get_num_preds(start_iteration, num_iteration, nrow, predict_type)
1014
            if preds is None:
1015
                preds = np.empty(n_preds, dtype=np.float64)
1016
1017
1018
1019
1020
1021
1022
            elif len(preds.shape) != 1 or len(preds) != n_preds:
                raise ValueError("Wrong length of pre-allocated predict array")
            out_num_preds = ctypes.c_int64(0)

            ptr_indptr, type_ptr_indptr, __ = c_int_array(csr.indptr)
            ptr_data, type_ptr_data, _ = c_float_array(csr.data)

1023
            assert csr.shape[1] <= MAX_INT32
1024
            csr_indices = csr.indices.astype(np.int32, copy=False)
1025

1026
1027
1028
            _safe_call(_LIB.LGBM_BoosterPredictForCSR(
                self.handle,
                ptr_indptr,
1029
                ctypes.c_int(type_ptr_indptr),
1030
                csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
1031
1032
1033
1034
1035
1036
                ptr_data,
                ctypes.c_int(type_ptr_data),
                ctypes.c_int64(len(csr.indptr)),
                ctypes.c_int64(len(csr.data)),
                ctypes.c_int64(csr.shape[1]),
                ctypes.c_int(predict_type),
1037
                ctypes.c_int(start_iteration),
1038
1039
1040
1041
1042
1043
1044
                ctypes.c_int(num_iteration),
                c_str(self.pred_parameter),
                ctypes.byref(out_num_preds),
                preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
            if n_preds != out_num_preds.value:
                raise ValueError("Wrong length for predict results")
            return preds, nrow
wxchan's avatar
wxchan committed
1045

1046
        def inner_predict_sparse(csr, start_iteration, num_iteration, predict_type):
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
            ptr_indptr, type_ptr_indptr, __ = c_int_array(csr.indptr)
            ptr_data, type_ptr_data, _ = c_float_array(csr.data)
            csr_indices = csr.indices.astype(np.int32, copy=False)
            matrix_type = C_API_MATRIX_TYPE_CSR
            if type_ptr_indptr == C_API_DTYPE_INT32:
                out_ptr_indptr = ctypes.POINTER(ctypes.c_int32)()
            else:
                out_ptr_indptr = ctypes.POINTER(ctypes.c_int64)()
            out_ptr_indices = ctypes.POINTER(ctypes.c_int32)()
            if type_ptr_data == C_API_DTYPE_FLOAT32:
                out_ptr_data = ctypes.POINTER(ctypes.c_float)()
            else:
                out_ptr_data = ctypes.POINTER(ctypes.c_double)()
1060
            out_shape = np.empty(2, dtype=np.int64)
1061
1062
1063
            _safe_call(_LIB.LGBM_BoosterPredictSparseOutput(
                self.handle,
                ptr_indptr,
1064
                ctypes.c_int(type_ptr_indptr),
1065
1066
1067
1068
1069
1070
1071
                csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
                ptr_data,
                ctypes.c_int(type_ptr_data),
                ctypes.c_int64(len(csr.indptr)),
                ctypes.c_int64(len(csr.data)),
                ctypes.c_int64(csr.shape[1]),
                ctypes.c_int(predict_type),
1072
                ctypes.c_int(start_iteration),
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
                ctypes.c_int(num_iteration),
                c_str(self.pred_parameter),
                ctypes.c_int(matrix_type),
                out_shape.ctypes.data_as(ctypes.POINTER(ctypes.c_int64)),
                ctypes.byref(out_ptr_indptr),
                ctypes.byref(out_ptr_indices),
                ctypes.byref(out_ptr_data)))
            matrices = self.__create_sparse_native(csr, out_shape, out_ptr_indptr, out_ptr_indices, out_ptr_data,
                                                   type_ptr_indptr, type_ptr_data, is_csr=True)
            nrow = len(csr.indptr) - 1
            return matrices, nrow

        if predict_type == C_API_PREDICT_CONTRIB:
1086
            return inner_predict_sparse(csr, start_iteration, num_iteration, predict_type)
1087
1088
1089
1090
        nrow = len(csr.indptr) - 1
        if nrow > MAX_INT32:
            sections = [0] + list(np.arange(start=MAX_INT32, stop=nrow, step=MAX_INT32)) + [nrow]
            # __get_num_preds() cannot work with nrow > MAX_INT32, so calculate overall number of predictions piecemeal
1091
            n_preds = [self.__get_num_preds(start_iteration, num_iteration, i, predict_type) for i in np.diff(sections)]
1092
            n_preds_sections = np.array([0] + n_preds, dtype=np.intp).cumsum()
1093
            preds = np.empty(sum(n_preds), dtype=np.float64)
1094
1095
            for (start_idx, end_idx), (start_idx_pred, end_idx_pred) in zip(zip(sections, sections[1:]),
                                                                            zip(n_preds_sections, n_preds_sections[1:])):
1096
                # avoid memory consumption by arrays concatenation operations
1097
                inner_predict(csr[start_idx:end_idx], start_iteration, num_iteration, predict_type, preds[start_idx_pred:end_idx_pred])
1098
1099
            return preds, nrow
        else:
1100
            return inner_predict(csr, start_iteration, num_iteration, predict_type)
Guolin Ke's avatar
Guolin Ke committed
1101

1102
    def __pred_for_csc(self, csc, start_iteration, num_iteration, predict_type):
1103
        """Predict for a CSC data."""
1104
        def inner_predict_sparse(csc, start_iteration, num_iteration, predict_type):
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
            ptr_indptr, type_ptr_indptr, __ = c_int_array(csc.indptr)
            ptr_data, type_ptr_data, _ = c_float_array(csc.data)
            csc_indices = csc.indices.astype(np.int32, copy=False)
            matrix_type = C_API_MATRIX_TYPE_CSC
            if type_ptr_indptr == C_API_DTYPE_INT32:
                out_ptr_indptr = ctypes.POINTER(ctypes.c_int32)()
            else:
                out_ptr_indptr = ctypes.POINTER(ctypes.c_int64)()
            out_ptr_indices = ctypes.POINTER(ctypes.c_int32)()
            if type_ptr_data == C_API_DTYPE_FLOAT32:
                out_ptr_data = ctypes.POINTER(ctypes.c_float)()
            else:
                out_ptr_data = ctypes.POINTER(ctypes.c_double)()
1118
            out_shape = np.empty(2, dtype=np.int64)
1119
1120
1121
            _safe_call(_LIB.LGBM_BoosterPredictSparseOutput(
                self.handle,
                ptr_indptr,
1122
                ctypes.c_int(type_ptr_indptr),
1123
1124
1125
1126
1127
1128
1129
                csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
                ptr_data,
                ctypes.c_int(type_ptr_data),
                ctypes.c_int64(len(csc.indptr)),
                ctypes.c_int64(len(csc.data)),
                ctypes.c_int64(csc.shape[0]),
                ctypes.c_int(predict_type),
1130
                ctypes.c_int(start_iteration),
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
                ctypes.c_int(num_iteration),
                c_str(self.pred_parameter),
                ctypes.c_int(matrix_type),
                out_shape.ctypes.data_as(ctypes.POINTER(ctypes.c_int64)),
                ctypes.byref(out_ptr_indptr),
                ctypes.byref(out_ptr_indices),
                ctypes.byref(out_ptr_data)))
            matrices = self.__create_sparse_native(csc, out_shape, out_ptr_indptr, out_ptr_indices, out_ptr_data,
                                                   type_ptr_indptr, type_ptr_data, is_csr=False)
            nrow = csc.shape[0]
            return matrices, nrow

Guolin Ke's avatar
Guolin Ke committed
1143
        nrow = csc.shape[0]
1144
        if nrow > MAX_INT32:
1145
            return self.__pred_for_csr(csc.tocsr(), start_iteration, num_iteration, predict_type)
1146
        if predict_type == C_API_PREDICT_CONTRIB:
1147
1148
            return inner_predict_sparse(csc, start_iteration, num_iteration, predict_type)
        n_preds = self.__get_num_preds(start_iteration, num_iteration, nrow, predict_type)
1149
        preds = np.empty(n_preds, dtype=np.float64)
Guolin Ke's avatar
Guolin Ke committed
1150
1151
        out_num_preds = ctypes.c_int64(0)

1152
1153
        ptr_indptr, type_ptr_indptr, __ = c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = c_float_array(csc.data)
Guolin Ke's avatar
Guolin Ke committed
1154

1155
        assert csc.shape[0] <= MAX_INT32
1156
        csc_indices = csc.indices.astype(np.int32, copy=False)
1157

Guolin Ke's avatar
Guolin Ke committed
1158
1159
1160
        _safe_call(_LIB.LGBM_BoosterPredictForCSC(
            self.handle,
            ptr_indptr,
1161
            ctypes.c_int(type_ptr_indptr),
1162
            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
Guolin Ke's avatar
Guolin Ke committed
1163
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1164
1165
1166
1167
1168
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
            ctypes.c_int(predict_type),
1169
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
1170
            ctypes.c_int(num_iteration),
1171
            c_str(self.pred_parameter),
Guolin Ke's avatar
Guolin Ke committed
1172
            ctypes.byref(out_num_preds),
wxchan's avatar
wxchan committed
1173
            preds.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
wxchan's avatar
wxchan committed
1174
        if n_preds != out_num_preds.value:
1175
            raise ValueError("Wrong length for predict results")
wxchan's avatar
wxchan committed
1176
1177
        return preds, nrow

1178
    def current_iteration(self) -> int:
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
        """Get the index of the current iteration.

        Returns
        -------
        cur_iter : int
            The index of the current iteration.
        """
        out_cur_iter = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetCurrentIteration(
            self.handle,
            ctypes.byref(out_cur_iter)))
        return out_cur_iter.value

wxchan's avatar
wxchan committed
1192

1193
class Dataset:
wxchan's avatar
wxchan committed
1194
    """Dataset in LightGBM."""
1195

1196
    def __init__(self, data, label=None, reference=None,
1197
                 weight=None, group=None, init_score=None,
1198
                 feature_name='auto', categorical_feature='auto', params=None,
wxchan's avatar
wxchan committed
1199
                 free_raw_data=True):
1200
        """Initialize Dataset.
1201

wxchan's avatar
wxchan committed
1202
1203
        Parameters
        ----------
1204
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array
wxchan's avatar
wxchan committed
1205
            Data source of Dataset.
1206
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM) or a LightGBM Dataset binary file.
1207
        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None, optional (default=None)
1208
1209
1210
            Label of the data.
        reference : Dataset or None, optional (default=None)
            If this is Dataset for validation, training data should be used as reference.
1211
        weight : list, numpy 1-D array, pandas Series or None, optional (default=None)
1212
            Weight for each instance. Weights should be non-negative.
1213
        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
1214
1215
1216
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
1217
1218
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
1219
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None, optional (default=None)
1220
            Init score for Dataset.
1221
        feature_name : list of str, or 'auto', optional (default="auto")
1222
1223
            Feature names.
            If 'auto' and data is pandas DataFrame, data columns names are used.
1224
        categorical_feature : list of str or int, or 'auto', optional (default="auto")
1225
1226
            Categorical features.
            If list of int, interpreted as indices.
1227
            If list of str, interpreted as feature names (need to specify ``feature_name`` as well).
1228
            If 'auto' and data is pandas DataFrame, pandas unordered categorical columns are used.
1229
            All values in categorical features will be cast to int32 and thus should be less than int32 max value (2147483647).
1230
            Large values could be memory consuming. Consider using consecutive integers starting from zero.
1231
            All negative values in categorical features will be treated as missing values.
1232
            The output cannot be monotonically constrained with respect to a categorical feature.
1233
            Floating point numbers in categorical features will be rounded towards 0.
Nikita Titov's avatar
Nikita Titov committed
1234
        params : dict or None, optional (default=None)
1235
            Other parameters for Dataset.
Nikita Titov's avatar
Nikita Titov committed
1236
        free_raw_data : bool, optional (default=True)
1237
            If True, raw data is freed after constructing inner Dataset.
wxchan's avatar
wxchan committed
1238
        """
wxchan's avatar
wxchan committed
1239
1240
1241
1242
1243
1244
        self.handle = None
        self.data = data
        self.label = label
        self.reference = reference
        self.weight = weight
        self.group = group
1245
        self.init_score = init_score
wxchan's avatar
wxchan committed
1246
        self.feature_name = feature_name
1247
        self.categorical_feature = categorical_feature
1248
        self.params = deepcopy(params)
wxchan's avatar
wxchan committed
1249
1250
        self.free_raw_data = free_raw_data
        self.used_indices = None
1251
        self.need_slice = True
wxchan's avatar
wxchan committed
1252
        self._predictor = None
1253
        self.pandas_categorical = None
1254
        self.params_back_up = None
1255
1256
        self.feature_penalty = None
        self.monotone_constraints = None
1257
        self.version = 0
1258
        self._start_row = 0  # Used when pushing rows one by one.
wxchan's avatar
wxchan committed
1259

1260
    def __del__(self) -> None:
1261
1262
1263
1264
        try:
            self._free_handle()
        except AttributeError:
            pass
1265

1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
    def _create_sample_indices(self, total_nrow: int) -> np.ndarray:
        """Get an array of randomly chosen indices from this ``Dataset``.

        Indices are sampled without replacement.

        Parameters
        ----------
        total_nrow : int
            Total number of rows to sample from.
            If this value is greater than the value of parameter ``bin_construct_sample_cnt``, only ``bin_construct_sample_cnt`` indices will be used.
            If Dataset has multiple input data, this should be the sum of rows of every file.

        Returns
        -------
        indices : numpy array
            Indices for sampled data.
        """
        param_str = param_dict_to_str(self.get_params())
        sample_cnt = _get_sample_count(total_nrow, param_str)
        indices = np.empty(sample_cnt, dtype=np.int32)
        ptr_data, _, _ = c_int_array(indices)
        actual_sample_cnt = ctypes.c_int32(0)

        _safe_call(_LIB.LGBM_SampleIndices(
            ctypes.c_int32(total_nrow),
            c_str(param_str),
            ptr_data,
            ctypes.byref(actual_sample_cnt),
        ))
1295
1296
        assert sample_cnt == actual_sample_cnt.value
        return indices
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331

    def _init_from_ref_dataset(self, total_nrow: int, ref_dataset: 'Dataset') -> 'Dataset':
        """Create dataset from a reference dataset.

        Parameters
        ----------
        total_nrow : int
            Number of rows expected to add to dataset.
        ref_dataset : Dataset
            Reference dataset to extract meta from.

        Returns
        -------
        self : Dataset
            Constructed Dataset object.
        """
        self.handle = ctypes.c_void_p()
        _safe_call(_LIB.LGBM_DatasetCreateByReference(
            ref_dataset,
            ctypes.c_int64(total_nrow),
            ctypes.byref(self.handle),
        ))
        return self

    def _init_from_sample(
        self,
        sample_data: List[np.ndarray],
        sample_indices: List[np.ndarray],
        sample_cnt: int,
        total_nrow: int,
    ) -> "Dataset":
        """Create Dataset from sampled data structures.

        Parameters
        ----------
1332
        sample_data : list of numpy array
1333
            Sample data for each column.
1334
        sample_indices : list of numpy array
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
            Sample data row index for each column.
        sample_cnt : int
            Number of samples.
        total_nrow : int
            Total number of rows for all input files.

        Returns
        -------
        self : Dataset
            Constructed Dataset object.
        """
        ncol = len(sample_indices)
        assert len(sample_data) == ncol, "#sample data column != #column indices"

        for i in range(ncol):
            if sample_data[i].dtype != np.double:
                raise ValueError(f"sample_data[{i}] type {sample_data[i].dtype} is not double")
            if sample_indices[i].dtype != np.int32:
                raise ValueError(f"sample_indices[{i}] type {sample_indices[i].dtype} is not int32")

        # c type: double**
        # each double* element points to start of each column of sample data.
        sample_col_ptr = (ctypes.POINTER(ctypes.c_double) * ncol)()
        # c type int**
        # each int* points to start of indices for each column
        indices_col_ptr = (ctypes.POINTER(ctypes.c_int32) * ncol)()
        for i in range(ncol):
            sample_col_ptr[i] = c_float_array(sample_data[i])[0]
            indices_col_ptr[i] = c_int_array(sample_indices[i])[0]

        num_per_col = np.array([len(d) for d in sample_indices], dtype=np.int32)
        num_per_col_ptr, _, _ = c_int_array(num_per_col)

        self.handle = ctypes.c_void_p()
        params_str = param_dict_to_str(self.get_params())
        _safe_call(_LIB.LGBM_DatasetCreateFromSampledColumn(
            ctypes.cast(sample_col_ptr, ctypes.POINTER(ctypes.POINTER(ctypes.c_double))),
            ctypes.cast(indices_col_ptr, ctypes.POINTER(ctypes.POINTER(ctypes.c_int32))),
            ctypes.c_int32(ncol),
            num_per_col_ptr,
            ctypes.c_int32(sample_cnt),
            ctypes.c_int32(total_nrow),
1377
            ctypes.c_int64(total_nrow),
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
            c_str(params_str),
            ctypes.byref(self.handle),
        ))
        return self

    def _push_rows(self, data: np.ndarray) -> 'Dataset':
        """Add rows to Dataset.

        Parameters
        ----------
        data : numpy 1-D array
            New data to add to the Dataset.

        Returns
        -------
        self : Dataset
            Dataset object.
        """
        nrow, ncol = data.shape
        data = data.reshape(data.size)
        data_ptr, data_type, _ = c_float_array(data)

        _safe_call(_LIB.LGBM_DatasetPushRows(
            self.handle,
            data_ptr,
            data_type,
            ctypes.c_int32(nrow),
            ctypes.c_int32(ncol),
            ctypes.c_int32(self._start_row),
        ))
        self._start_row += nrow
        return self

1411
    def get_params(self) -> Dict[str, Any]:
1412
1413
1414
1415
        """Get the used parameters in the Dataset.

        Returns
        -------
1416
        params : dict
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
            The used parameters in this Dataset object.
        """
        if self.params is not None:
            # no min_data, nthreads and verbose in this function
            dataset_params = _ConfigAliases.get("bin_construct_sample_cnt",
                                                "categorical_feature",
                                                "data_random_seed",
                                                "enable_bundle",
                                                "feature_pre_filter",
                                                "forcedbins_filename",
                                                "group_column",
                                                "header",
                                                "ignore_column",
                                                "is_enable_sparse",
                                                "label_column",
1432
                                                "linear_tree",
1433
1434
1435
1436
                                                "max_bin",
                                                "max_bin_by_feature",
                                                "min_data_in_bin",
                                                "pre_partition",
Nikita Titov's avatar
Nikita Titov committed
1437
                                                "precise_float_parser",
1438
1439
1440
1441
1442
                                                "two_round",
                                                "use_missing",
                                                "weight_column",
                                                "zero_as_missing")
            return {k: v for k, v in self.params.items() if k in dataset_params}
1443
1444
        else:
            return {}
1445

1446
    def _free_handle(self) -> "Dataset":
1447
        if self.handle is not None:
1448
            _safe_call(_LIB.LGBM_DatasetFree(self.handle))
1449
            self.handle = None
Guolin Ke's avatar
Guolin Ke committed
1450
1451
1452
        self.need_slice = True
        if self.used_indices is not None:
            self.data = None
Nikita Titov's avatar
Nikita Titov committed
1453
        return self
wxchan's avatar
wxchan committed
1454

Guolin Ke's avatar
Guolin Ke committed
1455
1456
    def _set_init_score_by_predictor(self, predictor, data, used_indices=None):
        data_has_header = False
1457
        if isinstance(data, (str, Path)):
Guolin Ke's avatar
Guolin Ke committed
1458
            # check data has header or not
1459
            data_has_header = any(self.params.get(alias, False) for alias in _ConfigAliases.get("header"))
Guolin Ke's avatar
Guolin Ke committed
1460
        num_data = self.num_data()
1461
1462
1463
        if predictor is not None:
            init_score = predictor.predict(data,
                                           raw_score=True,
1464
1465
                                           data_has_header=data_has_header)
            init_score = init_score.ravel()
1466
1467
            if used_indices is not None:
                assert not self.need_slice
1468
                if isinstance(data, (str, Path)):
1469
                    sub_init_score = np.empty(num_data * predictor.num_class, dtype=np.float64)
1470
                    assert num_data == len(used_indices)
1471
1472
                    for i in range(len(used_indices)):
                        for j in range(predictor.num_class):
1473
1474
1475
1476
                            sub_init_score[i * predictor.num_class + j] = init_score[used_indices[i] * predictor.num_class + j]
                    init_score = sub_init_score
            if predictor.num_class > 1:
                # need to regroup init_score
1477
                new_init_score = np.empty(init_score.size, dtype=np.float64)
1478
1479
                for i in range(num_data):
                    for j in range(predictor.num_class):
1480
1481
1482
                        new_init_score[j * num_data + i] = init_score[i * predictor.num_class + j]
                init_score = new_init_score
        elif self.init_score is not None:
1483
            init_score = np.zeros(self.init_score.shape, dtype=np.float64)
1484
1485
        else:
            return self
Guolin Ke's avatar
Guolin Ke committed
1486
1487
        self.set_init_score(init_score)

1488
    def _lazy_init(self, data, label=None, reference=None,
1489
                   weight=None, group=None, init_score=None, predictor=None,
1490
                   feature_name='auto', categorical_feature='auto', params=None):
wxchan's avatar
wxchan committed
1491
1492
        if data is None:
            self.handle = None
Nikita Titov's avatar
Nikita Titov committed
1493
            return self
Guolin Ke's avatar
Guolin Ke committed
1494
1495
1496
        if reference is not None:
            self.pandas_categorical = reference.pandas_categorical
            categorical_feature = reference.categorical_feature
1497
1498
1499
1500
        data, feature_name, categorical_feature, self.pandas_categorical = _data_from_pandas(data,
                                                                                             feature_name,
                                                                                             categorical_feature,
                                                                                             self.pandas_categorical)
wxchan's avatar
wxchan committed
1501
        label = _label_from_pandas(label)
Guolin Ke's avatar
Guolin Ke committed
1502

1503
        # process for args
wxchan's avatar
wxchan committed
1504
        params = {} if params is None else params
1505
1506
1507
        args_names = (getattr(self.__class__, '_lazy_init')
                      .__code__
                      .co_varnames[:getattr(self.__class__, '_lazy_init').__code__.co_argcount])
1508
        for key in params.keys():
1509
            if key in args_names:
1510
1511
                _log_warning(f'{key} keyword has been found in `params` and will be ignored.\n'
                             f'Please use {key} argument of the Dataset constructor to pass this parameter.')
1512
        # get categorical features
1513
1514
1515
1516
1517
1518
        if categorical_feature is not None:
            categorical_indices = set()
            feature_dict = {}
            if feature_name is not None:
                feature_dict = {name: i for i, name in enumerate(feature_name)}
            for name in categorical_feature:
1519
                if isinstance(name, str) and name in feature_dict:
1520
                    categorical_indices.add(feature_dict[name])
1521
                elif isinstance(name, int):
1522
1523
                    categorical_indices.add(name)
                else:
1524
                    raise TypeError(f"Wrong type({type(name).__name__}) or unknown name({name}) in categorical_feature")
1525
            if categorical_indices:
1526
1527
                for cat_alias in _ConfigAliases.get("categorical_feature"):
                    if cat_alias in params:
1528
                        # If the params[cat_alias] is equal to categorical_indices, do not report the warning.
1529
                        if not (isinstance(params[cat_alias], list) and set(params[cat_alias]) == categorical_indices):
1530
                            _log_warning(f'{cat_alias} in param dict is overridden.')
1531
                        params.pop(cat_alias, None)
1532
                params['categorical_column'] = sorted(categorical_indices)
1533

wxchan's avatar
wxchan committed
1534
        params_str = param_dict_to_str(params)
1535
        self.params = params
1536
        # process for reference dataset
wxchan's avatar
wxchan committed
1537
        ref_dataset = None
wxchan's avatar
wxchan committed
1538
        if isinstance(reference, Dataset):
1539
            ref_dataset = reference.construct().handle
wxchan's avatar
wxchan committed
1540
1541
        elif reference is not None:
            raise TypeError('Reference dataset should be None or dataset instance')
1542
        # start construct data
1543
        if isinstance(data, (str, Path)):
wxchan's avatar
wxchan committed
1544
1545
            self.handle = ctypes.c_void_p()
            _safe_call(_LIB.LGBM_DatasetCreateFromFile(
1546
                c_str(str(data)),
wxchan's avatar
wxchan committed
1547
1548
1549
1550
1551
                c_str(params_str),
                ref_dataset,
                ctypes.byref(self.handle)))
        elif isinstance(data, scipy.sparse.csr_matrix):
            self.__init_from_csr(data, params_str, ref_dataset)
Guolin Ke's avatar
Guolin Ke committed
1552
1553
        elif isinstance(data, scipy.sparse.csc_matrix):
            self.__init_from_csc(data, params_str, ref_dataset)
wxchan's avatar
wxchan committed
1554
1555
        elif isinstance(data, np.ndarray):
            self.__init_from_np2d(data, params_str, ref_dataset)
1556
1557
1558
1559
1560
1561
1562
1563
1564
        elif isinstance(data, list) and len(data) > 0:
            if all(isinstance(x, np.ndarray) for x in data):
                self.__init_from_list_np2d(data, params_str, ref_dataset)
            elif all(isinstance(x, Sequence) for x in data):
                self.__init_from_seqs(data, ref_dataset)
            else:
                raise TypeError('Data list can only be of ndarray or Sequence')
        elif isinstance(data, Sequence):
            self.__init_from_seqs([data], ref_dataset)
1565
        elif isinstance(data, dt_DataTable):
1566
            self.__init_from_np2d(data.to_numpy(), params_str, ref_dataset)
wxchan's avatar
wxchan committed
1567
1568
1569
1570
        else:
            try:
                csr = scipy.sparse.csr_matrix(data)
                self.__init_from_csr(csr, params_str, ref_dataset)
1571
            except BaseException:
1572
                raise TypeError(f'Cannot initialize Dataset from {type(data).__name__}')
wxchan's avatar
wxchan committed
1573
1574
1575
        if label is not None:
            self.set_label(label)
        if self.get_label() is None:
1576
            raise ValueError("Label should not be None")
wxchan's avatar
wxchan committed
1577
1578
1579
1580
        if weight is not None:
            self.set_weight(weight)
        if group is not None:
            self.set_group(group)
1581
1582
        if isinstance(predictor, _InnerPredictor):
            if self._predictor is None and init_score is not None:
1583
                _log_warning("The init_score will be overridden by the prediction of init_model.")
Guolin Ke's avatar
Guolin Ke committed
1584
            self._set_init_score_by_predictor(predictor, data)
1585
1586
        elif init_score is not None:
            self.set_init_score(init_score)
Guolin Ke's avatar
Guolin Ke committed
1587
        elif predictor is not None:
1588
            raise TypeError(f'Wrong predictor type {type(predictor).__name__}')
Guolin Ke's avatar
Guolin Ke committed
1589
        # set feature names
Nikita Titov's avatar
Nikita Titov committed
1590
        return self.set_feature_name(feature_name)
wxchan's avatar
wxchan committed
1591

1592
1593
    @staticmethod
    def _yield_row_from_seqlist(seqs: List[Sequence], indices: Iterable[int]):
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
        offset = 0
        seq_id = 0
        seq = seqs[seq_id]
        for row_id in indices:
            assert row_id >= offset, "sample indices are expected to be monotonic"
            while row_id >= offset + len(seq):
                offset += len(seq)
                seq_id += 1
                seq = seqs[seq_id]
            id_in_seq = row_id - offset
            row = seq[id_in_seq]
            yield row if row.flags['OWNDATA'] else row.copy()

    def __sample(self, seqs: List[Sequence], total_nrow: int) -> Tuple[List[np.ndarray], List[np.ndarray]]:
        """Sample data from seqs.

        Mimics behavior in c_api.cpp:LGBM_DatasetCreateFromMats()

        Returns
        -------
            sampled_rows, sampled_row_indices
        """
        indices = self._create_sample_indices(total_nrow)

        # Select sampled rows, transpose to column order.
1619
        sampled = np.array([row for row in self._yield_row_from_seqlist(seqs, indices)])
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
        sampled = sampled.T

        filtered = []
        filtered_idx = []
        sampled_row_range = np.arange(len(indices), dtype=np.int32)
        for col in sampled:
            col_predicate = (np.abs(col) > ZERO_THRESHOLD) | np.isnan(col)
            filtered_col = col[col_predicate]
            filtered_row_idx = sampled_row_range[col_predicate]

            filtered.append(filtered_col)
            filtered_idx.append(filtered_row_idx)

        return filtered, filtered_idx

    def __init_from_seqs(self, seqs: List[Sequence], ref_dataset: Optional['Dataset'] = None):
        """
        Initialize data from list of Sequence objects.

        Sequence: Generic Data Access Object
            Supports random access and access by batch if properly defined by user

        Data scheme uniformity are trusted, not checked
        """
        total_nrow = sum(len(seq) for seq in seqs)

        # create validation dataset from ref_dataset
        if ref_dataset is not None:
            self._init_from_ref_dataset(total_nrow, ref_dataset)
        else:
            param_str = param_dict_to_str(self.get_params())
            sample_cnt = _get_sample_count(total_nrow, param_str)

            sample_data, col_indices = self.__sample(seqs, total_nrow)
            self._init_from_sample(sample_data, col_indices, sample_cnt, total_nrow)

        for seq in seqs:
            nrow = len(seq)
            batch_size = getattr(seq, 'batch_size', None) or Sequence.batch_size
            for start in range(0, nrow, batch_size):
                end = min(start + batch_size, nrow)
                self._push_rows(seq[start:end])
        return self

wxchan's avatar
wxchan committed
1664
    def __init_from_np2d(self, mat, params_str, ref_dataset):
1665
        """Initialize data from a 2-D numpy matrix."""
wxchan's avatar
wxchan committed
1666
1667
1668
1669
1670
1671
        if len(mat.shape) != 2:
            raise ValueError('Input numpy.ndarray must be 2 dimensional')

        self.handle = ctypes.c_void_p()
        if mat.dtype == np.float32 or mat.dtype == np.float64:
            data = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
1672
        else:  # change non-float data to float data, need to copy
wxchan's avatar
wxchan committed
1673
1674
            data = np.array(mat.reshape(mat.size), dtype=np.float32)

1675
        ptr_data, type_ptr_data, _ = c_float_array(data)
wxchan's avatar
wxchan committed
1676
1677
        _safe_call(_LIB.LGBM_DatasetCreateFromMat(
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1678
            ctypes.c_int(type_ptr_data),
1679
1680
            ctypes.c_int32(mat.shape[0]),
            ctypes.c_int32(mat.shape[1]),
Guolin Ke's avatar
Guolin Ke committed
1681
            ctypes.c_int(C_API_IS_ROW_MAJOR),
wxchan's avatar
wxchan committed
1682
1683
1684
            c_str(params_str),
            ref_dataset,
            ctypes.byref(self.handle)))
Nikita Titov's avatar
Nikita Titov committed
1685
        return self
wxchan's avatar
wxchan committed
1686

1687
    def __init_from_list_np2d(self, mats, params_str, ref_dataset):
1688
        """Initialize data from a list of 2-D numpy matrices."""
1689
        ncol = mats[0].shape[1]
1690
        nrow = np.empty((len(mats),), np.int32)
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
        if mats[0].dtype == np.float64:
            ptr_data = (ctypes.POINTER(ctypes.c_double) * len(mats))()
        else:
            ptr_data = (ctypes.POINTER(ctypes.c_float) * len(mats))()

        holders = []
        type_ptr_data = None

        for i, mat in enumerate(mats):
            if len(mat.shape) != 2:
                raise ValueError('Input numpy.ndarray must be 2 dimensional')

            if mat.shape[1] != ncol:
                raise ValueError('Input arrays must have same number of columns')

            nrow[i] = mat.shape[0]

            if mat.dtype == np.float32 or mat.dtype == np.float64:
                mats[i] = np.array(mat.reshape(mat.size), dtype=mat.dtype, copy=False)
1710
            else:  # change non-float data to float data, need to copy
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
                mats[i] = np.array(mat.reshape(mat.size), dtype=np.float32)

            chunk_ptr_data, chunk_type_ptr_data, holder = c_float_array(mats[i])
            if type_ptr_data is not None and chunk_type_ptr_data != type_ptr_data:
                raise ValueError('Input chunks must have same type')
            ptr_data[i] = chunk_ptr_data
            type_ptr_data = chunk_type_ptr_data
            holders.append(holder)

        self.handle = ctypes.c_void_p()
        _safe_call(_LIB.LGBM_DatasetCreateFromMats(
1722
            ctypes.c_int32(len(mats)),
1723
1724
1725
            ctypes.cast(ptr_data, ctypes.POINTER(ctypes.POINTER(ctypes.c_double))),
            ctypes.c_int(type_ptr_data),
            nrow.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
1726
            ctypes.c_int32(ncol),
1727
1728
1729
1730
            ctypes.c_int(C_API_IS_ROW_MAJOR),
            c_str(params_str),
            ref_dataset,
            ctypes.byref(self.handle)))
Nikita Titov's avatar
Nikita Titov committed
1731
        return self
1732

wxchan's avatar
wxchan committed
1733
    def __init_from_csr(self, csr, params_str, ref_dataset):
1734
        """Initialize data from a CSR matrix."""
wxchan's avatar
wxchan committed
1735
        if len(csr.indices) != len(csr.data):
1736
            raise ValueError(f'Length mismatch: {len(csr.indices)} vs {len(csr.data)}')
wxchan's avatar
wxchan committed
1737
1738
        self.handle = ctypes.c_void_p()

1739
1740
        ptr_indptr, type_ptr_indptr, __ = c_int_array(csr.indptr)
        ptr_data, type_ptr_data, _ = c_float_array(csr.data)
wxchan's avatar
wxchan committed
1741

1742
        assert csr.shape[1] <= MAX_INT32
1743
        csr_indices = csr.indices.astype(np.int32, copy=False)
1744

wxchan's avatar
wxchan committed
1745
1746
        _safe_call(_LIB.LGBM_DatasetCreateFromCSR(
            ptr_indptr,
Guolin Ke's avatar
Guolin Ke committed
1747
            ctypes.c_int(type_ptr_indptr),
1748
            csr_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
wxchan's avatar
wxchan committed
1749
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1750
1751
1752
1753
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csr.indptr)),
            ctypes.c_int64(len(csr.data)),
            ctypes.c_int64(csr.shape[1]),
wxchan's avatar
wxchan committed
1754
1755
1756
            c_str(params_str),
            ref_dataset,
            ctypes.byref(self.handle)))
Nikita Titov's avatar
Nikita Titov committed
1757
        return self
wxchan's avatar
wxchan committed
1758

Guolin Ke's avatar
Guolin Ke committed
1759
    def __init_from_csc(self, csc, params_str, ref_dataset):
1760
        """Initialize data from a CSC matrix."""
Guolin Ke's avatar
Guolin Ke committed
1761
        if len(csc.indices) != len(csc.data):
1762
            raise ValueError(f'Length mismatch: {len(csc.indices)} vs {len(csc.data)}')
Guolin Ke's avatar
Guolin Ke committed
1763
1764
        self.handle = ctypes.c_void_p()

1765
1766
        ptr_indptr, type_ptr_indptr, __ = c_int_array(csc.indptr)
        ptr_data, type_ptr_data, _ = c_float_array(csc.data)
Guolin Ke's avatar
Guolin Ke committed
1767

1768
        assert csc.shape[0] <= MAX_INT32
1769
        csc_indices = csc.indices.astype(np.int32, copy=False)
1770

Guolin Ke's avatar
Guolin Ke committed
1771
1772
        _safe_call(_LIB.LGBM_DatasetCreateFromCSC(
            ptr_indptr,
Guolin Ke's avatar
Guolin Ke committed
1773
            ctypes.c_int(type_ptr_indptr),
1774
            csc_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
Guolin Ke's avatar
Guolin Ke committed
1775
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
1776
1777
1778
1779
            ctypes.c_int(type_ptr_data),
            ctypes.c_int64(len(csc.indptr)),
            ctypes.c_int64(len(csc.data)),
            ctypes.c_int64(csc.shape[0]),
Guolin Ke's avatar
Guolin Ke committed
1780
1781
1782
            c_str(params_str),
            ref_dataset,
            ctypes.byref(self.handle)))
Nikita Titov's avatar
Nikita Titov committed
1783
        return self
Guolin Ke's avatar
Guolin Ke committed
1784

1785
    @staticmethod
1786
1787
1788
1789
1790
1791
    def _compare_params_for_warning(
        params: Optional[Dict[str, Any]],
        other_params: Optional[Dict[str, Any]],
        ignore_keys: Set[str]
    ) -> bool:
        """Compare two dictionaries with params ignoring some keys.
1792

1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
        It is only for the warning purpose.

        Parameters
        ----------
        params : dict or None
            One dictionary with parameters to compare.
        other_params : dict or None
            Another dictionary with parameters to compare.
        ignore_keys : set
            Keys that should be ignored during comparing two dictionaries.
1803
1804
1805

        Returns
        -------
1806
1807
        compare_result : bool
          Returns whether two dictionaries with params are equal.
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
        """
        if params is None:
            params = {}
        if other_params is None:
            other_params = {}
        for k in other_params:
            if k not in ignore_keys:
                if k not in params or params[k] != other_params[k]:
                    return False
        for k in params:
            if k not in ignore_keys:
                if k not in other_params or params[k] != other_params[k]:
                    return False
        return True

1823
    def construct(self) -> "Dataset":
1824
1825
1826
1827
1828
        """Lazy init.

        Returns
        -------
        self : Dataset
Nikita Titov's avatar
Nikita Titov committed
1829
            Constructed Dataset object.
1830
        """
1831
        if self.handle is None:
wxchan's avatar
wxchan committed
1832
            if self.reference is not None:
1833
                reference_params = self.reference.get_params()
1834
1835
                params = self.get_params()
                if params != reference_params:
1836
1837
1838
1839
1840
                    if not self._compare_params_for_warning(
                        params=params,
                        other_params=reference_params,
                        ignore_keys=_ConfigAliases.get("categorical_feature")
                    ):
1841
                        _log_warning('Overriding the parameters from Reference Dataset.')
1842
                    self._update_params(reference_params)
wxchan's avatar
wxchan committed
1843
                if self.used_indices is None:
1844
                    # create valid
1845
                    self._lazy_init(self.data, label=self.label, reference=self.reference,
1846
1847
                                    weight=self.weight, group=self.group,
                                    init_score=self.init_score, predictor=self._predictor,
1848
                                    feature_name=self.feature_name, params=self.params)
wxchan's avatar
wxchan committed
1849
                else:
1850
                    # construct subset
wxchan's avatar
wxchan committed
1851
                    used_indices = list_to_1d_numpy(self.used_indices, np.int32, name='used_indices')
1852
                    assert used_indices.flags.c_contiguous
Guolin Ke's avatar
Guolin Ke committed
1853
                    if self.reference.group is not None:
1854
                        group_info = np.array(self.reference.group).astype(np.int32, copy=False)
1855
                        _, self.group = np.unique(np.repeat(range(len(group_info)), repeats=group_info)[self.used_indices],
1856
                                                  return_counts=True)
1857
                    self.handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
1858
1859
                    params_str = param_dict_to_str(self.params)
                    _safe_call(_LIB.LGBM_DatasetGetSubset(
1860
                        self.reference.construct().handle,
wxchan's avatar
wxchan committed
1861
                        used_indices.ctypes.data_as(ctypes.POINTER(ctypes.c_int32)),
1862
                        ctypes.c_int32(used_indices.shape[0]),
wxchan's avatar
wxchan committed
1863
1864
                        c_str(params_str),
                        ctypes.byref(self.handle)))
Guolin Ke's avatar
Guolin Ke committed
1865
1866
                    if not self.free_raw_data:
                        self.get_data()
Guolin Ke's avatar
Guolin Ke committed
1867
1868
                    if self.group is not None:
                        self.set_group(self.group)
wxchan's avatar
wxchan committed
1869
1870
                    if self.get_label() is None:
                        raise ValueError("Label should not be None.")
Guolin Ke's avatar
Guolin Ke committed
1871
1872
1873
                    if isinstance(self._predictor, _InnerPredictor) and self._predictor is not self.reference._predictor:
                        self.get_data()
                        self._set_init_score_by_predictor(self._predictor, self.data, used_indices)
wxchan's avatar
wxchan committed
1874
            else:
1875
                # create train
1876
                self._lazy_init(self.data, label=self.label,
1877
1878
                                weight=self.weight, group=self.group,
                                init_score=self.init_score, predictor=self._predictor,
1879
                                feature_name=self.feature_name, categorical_feature=self.categorical_feature, params=self.params)
wxchan's avatar
wxchan committed
1880
1881
            if self.free_raw_data:
                self.data = None
1882
            self.feature_name = self.get_feature_name()
wxchan's avatar
wxchan committed
1883
        return self
wxchan's avatar
wxchan committed
1884

1885
1886
1887
1888
1889
1890
1891
1892
1893
    def create_valid(
        self,
        data,
        label=None,
        weight=None,
        group=None,
        init_score=None,
        params: Optional[Dict[str, Any]] = None
    ) -> "Dataset":
1894
        """Create validation data align with current Dataset.
wxchan's avatar
wxchan committed
1895
1896
1897

        Parameters
        ----------
1898
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array
wxchan's avatar
wxchan committed
1899
            Data source of Dataset.
1900
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM) or a LightGBM Dataset binary file.
1901
        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None, optional (default=None)
1902
1903
            Label of the data.
        weight : list, numpy 1-D array, pandas Series or None, optional (default=None)
1904
            Weight for each instance. Weights should be non-negative.
1905
        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
1906
1907
1908
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
1909
1910
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
1911
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None, optional (default=None)
1912
            Init score for Dataset.
Nikita Titov's avatar
Nikita Titov committed
1913
        params : dict or None, optional (default=None)
1914
            Other parameters for validation Dataset.
1915
1916
1917

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
1918
1919
        valid : Dataset
            Validation Dataset with reference to self.
wxchan's avatar
wxchan committed
1920
        """
1921
        ret = Dataset(data, label=label, reference=self,
1922
                      weight=weight, group=group, init_score=init_score,
1923
                      params=params, free_raw_data=self.free_raw_data)
wxchan's avatar
wxchan committed
1924
        ret._predictor = self._predictor
1925
        ret.pandas_categorical = self.pandas_categorical
wxchan's avatar
wxchan committed
1926
        return ret
wxchan's avatar
wxchan committed
1927

1928
1929
1930
1931
1932
    def subset(
        self,
        used_indices: List[int],
        params: Optional[Dict[str, Any]] = None
    ) -> "Dataset":
1933
        """Get subset of current Dataset.
wxchan's avatar
wxchan committed
1934
1935
1936
1937

        Parameters
        ----------
        used_indices : list of int
1938
            Indices used to create the subset.
Nikita Titov's avatar
Nikita Titov committed
1939
        params : dict or None, optional (default=None)
1940
            These parameters will be passed to Dataset constructor.
1941
1942
1943
1944
1945

        Returns
        -------
        subset : Dataset
            Subset of the current Dataset.
wxchan's avatar
wxchan committed
1946
        """
wxchan's avatar
wxchan committed
1947
1948
        if params is None:
            params = self.params
wxchan's avatar
wxchan committed
1949
        ret = Dataset(None, reference=self, feature_name=self.feature_name,
1950
1951
                      categorical_feature=self.categorical_feature, params=params,
                      free_raw_data=self.free_raw_data)
wxchan's avatar
wxchan committed
1952
        ret._predictor = self._predictor
1953
        ret.pandas_categorical = self.pandas_categorical
1954
        ret.used_indices = sorted(used_indices)
wxchan's avatar
wxchan committed
1955
1956
        return ret

1957
    def save_binary(self, filename: Union[str, Path]) -> "Dataset":
1958
        """Save Dataset to a binary file.
wxchan's avatar
wxchan committed
1959

1960
1961
1962
1963
1964
        .. note::

            Please note that `init_score` is not saved in binary file.
            If you need it, please set it again after loading Dataset.

wxchan's avatar
wxchan committed
1965
1966
        Parameters
        ----------
1967
        filename : str or pathlib.Path
wxchan's avatar
wxchan committed
1968
            Name of the output file.
Nikita Titov's avatar
Nikita Titov committed
1969
1970
1971
1972
1973

        Returns
        -------
        self : Dataset
            Returns self.
wxchan's avatar
wxchan committed
1974
1975
1976
        """
        _safe_call(_LIB.LGBM_DatasetSaveBinary(
            self.construct().handle,
1977
            c_str(str(filename))))
Nikita Titov's avatar
Nikita Titov committed
1978
        return self
wxchan's avatar
wxchan committed
1979

1980
    def _update_params(self, params: Optional[Dict[str, Any]]) -> "Dataset":
1981
1982
        if not params:
            return self
1983
        params = deepcopy(params)
1984
1985
1986
1987
1988

        def update():
            if not self.params:
                self.params = params
            else:
1989
                self.params_back_up = deepcopy(self.params)
1990
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
2001
2002
2003
                self.params.update(params)

        if self.handle is None:
            update()
        elif params is not None:
            ret = _LIB.LGBM_DatasetUpdateParamChecking(
                c_str(param_dict_to_str(self.params)),
                c_str(param_dict_to_str(params)))
            if ret != 0:
                # could be updated if data is not freed
                if self.data is not None:
                    update()
                    self._free_handle()
                else:
2004
                    raise LightGBMError(_LIB.LGBM_GetLastError().decode('utf-8'))
Nikita Titov's avatar
Nikita Titov committed
2005
        return self
wxchan's avatar
wxchan committed
2006

2007
    def _reverse_update_params(self) -> "Dataset":
2008
        if self.handle is None:
2009
            self.params = deepcopy(self.params_back_up)
2010
            self.params_back_up = None
Nikita Titov's avatar
Nikita Titov committed
2011
        return self
2012

2013
2014
2015
2016
2017
    def set_field(
        self,
        field_name: str,
        data
    ) -> "Dataset":
wxchan's avatar
wxchan committed
2018
        """Set property into the Dataset.
wxchan's avatar
wxchan committed
2019
2020
2021

        Parameters
        ----------
2022
        field_name : str
2023
            The field name of the information.
2024
2025
        data : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None
            The data to be set.
Nikita Titov's avatar
Nikita Titov committed
2026
2027
2028
2029
2030

        Returns
        -------
        self : Dataset
            Dataset with set property.
wxchan's avatar
wxchan committed
2031
        """
2032
        if self.handle is None:
2033
            raise Exception(f"Cannot set {field_name} before construct dataset")
wxchan's avatar
wxchan committed
2034
        if data is None:
2035
            # set to None
wxchan's avatar
wxchan committed
2036
2037
2038
2039
            _safe_call(_LIB.LGBM_DatasetSetField(
                self.handle,
                c_str(field_name),
                None,
Guolin Ke's avatar
Guolin Ke committed
2040
2041
                ctypes.c_int(0),
                ctypes.c_int(FIELD_TYPE_MAPPER[field_name])))
Nikita Titov's avatar
Nikita Titov committed
2042
            return self
2043
        if field_name == 'init_score':
Guolin Ke's avatar
Guolin Ke committed
2044
            dtype = np.float64
2045
2046
2047
2048
2049
2050
2051
2052
2053
2054
2055
2056
2057
2058
            if _is_1d_collection(data):
                data = list_to_1d_numpy(data, dtype, name=field_name)
            elif _is_2d_collection(data):
                data = _data_to_2d_numpy(data, dtype, name=field_name)
                data = data.ravel(order='F')
            else:
                raise TypeError(
                    'init_score must be list, numpy 1-D array or pandas Series.\n'
                    'In multiclass classification init_score can also be a list of lists, numpy 2-D array or pandas DataFrame.'
                )
        else:
            dtype = np.int32 if field_name == 'group' else np.float32
            data = list_to_1d_numpy(data, dtype, name=field_name)

2059
2060
        if data.dtype == np.float32 or data.dtype == np.float64:
            ptr_data, type_data, _ = c_float_array(data)
wxchan's avatar
wxchan committed
2061
        elif data.dtype == np.int32:
2062
            ptr_data, type_data, _ = c_int_array(data)
wxchan's avatar
wxchan committed
2063
        else:
2064
            raise TypeError(f"Expected np.float32/64 or np.int32, met type({data.dtype})")
wxchan's avatar
wxchan committed
2065
        if type_data != FIELD_TYPE_MAPPER[field_name]:
2066
            raise TypeError("Input type error for set_field")
wxchan's avatar
wxchan committed
2067
2068
2069
2070
        _safe_call(_LIB.LGBM_DatasetSetField(
            self.handle,
            c_str(field_name),
            ptr_data,
Guolin Ke's avatar
Guolin Ke committed
2071
2072
            ctypes.c_int(len(data)),
            ctypes.c_int(type_data)))
2073
        self.version += 1
Nikita Titov's avatar
Nikita Titov committed
2074
        return self
wxchan's avatar
wxchan committed
2075

2076
    def get_field(self, field_name: str) -> Optional[np.ndarray]:
wxchan's avatar
wxchan committed
2077
        """Get property from the Dataset.
wxchan's avatar
wxchan committed
2078
2079
2080

        Parameters
        ----------
2081
        field_name : str
2082
            The field name of the information.
wxchan's avatar
wxchan committed
2083
2084
2085

        Returns
        -------
2086
        info : numpy array or None
2087
            A numpy array with information from the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2088
        """
2089
        if self.handle is None:
2090
            raise Exception(f"Cannot get {field_name} before construct Dataset")
2091
2092
        tmp_out_len = ctypes.c_int(0)
        out_type = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2093
2094
2095
2096
2097
2098
2099
2100
2101
2102
2103
2104
        ret = ctypes.POINTER(ctypes.c_void_p)()
        _safe_call(_LIB.LGBM_DatasetGetField(
            self.handle,
            c_str(field_name),
            ctypes.byref(tmp_out_len),
            ctypes.byref(ret),
            ctypes.byref(out_type)))
        if out_type.value != FIELD_TYPE_MAPPER[field_name]:
            raise TypeError("Return type error for get_field")
        if tmp_out_len.value == 0:
            return None
        if out_type.value == C_API_DTYPE_INT32:
2105
            arr = cint32_array_to_numpy(ctypes.cast(ret, ctypes.POINTER(ctypes.c_int32)), tmp_out_len.value)
wxchan's avatar
wxchan committed
2106
        elif out_type.value == C_API_DTYPE_FLOAT32:
2107
            arr = cfloat32_array_to_numpy(ctypes.cast(ret, ctypes.POINTER(ctypes.c_float)), tmp_out_len.value)
Guolin Ke's avatar
Guolin Ke committed
2108
        elif out_type.value == C_API_DTYPE_FLOAT64:
2109
            arr = cfloat64_array_to_numpy(ctypes.cast(ret, ctypes.POINTER(ctypes.c_double)), tmp_out_len.value)
2110
        else:
wxchan's avatar
wxchan committed
2111
            raise TypeError("Unknown type")
2112
2113
2114
2115
2116
2117
        if field_name == 'init_score':
            num_data = self.num_data()
            num_classes = arr.size // num_data
            if num_classes > 1:
                arr = arr.reshape((num_data, num_classes), order='F')
        return arr
Guolin Ke's avatar
Guolin Ke committed
2118

2119
2120
2121
2122
    def set_categorical_feature(
        self,
        categorical_feature: Union[List[int], List[str]]
    ) -> "Dataset":
2123
        """Set categorical features.
2124
2125
2126

        Parameters
        ----------
2127
        categorical_feature : list of int or str
2128
            Names or indices of categorical features.
Nikita Titov's avatar
Nikita Titov committed
2129
2130
2131
2132
2133

        Returns
        -------
        self : Dataset
            Dataset with set categorical features.
2134
2135
        """
        if self.categorical_feature == categorical_feature:
Nikita Titov's avatar
Nikita Titov committed
2136
            return self
2137
        if self.data is not None:
2138
2139
            if self.categorical_feature is None:
                self.categorical_feature = categorical_feature
Nikita Titov's avatar
Nikita Titov committed
2140
                return self._free_handle()
2141
            elif categorical_feature == 'auto':
Nikita Titov's avatar
Nikita Titov committed
2142
                return self
2143
            else:
2144
2145
2146
                if self.categorical_feature != 'auto':
                    _log_warning('categorical_feature in Dataset is overridden.\n'
                                 f'New categorical_feature is {sorted(list(categorical_feature))}')
2147
                self.categorical_feature = categorical_feature
Nikita Titov's avatar
Nikita Titov committed
2148
                return self._free_handle()
2149
        else:
2150
2151
            raise LightGBMError("Cannot set categorical feature after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
2152

2153
2154
2155
2156
    def _set_predictor(
        self,
        predictor: Optional[_InnerPredictor]
    ) -> "Dataset":
2157
2158
2159
2160
        """Set predictor for continued training.

        It is not recommended for user to call this function.
        Please use init_model argument in engine.train() or engine.cv() instead.
Guolin Ke's avatar
Guolin Ke committed
2161
        """
2162
        if predictor is self._predictor and (predictor is None or predictor.current_iteration() == self._predictor.current_iteration()):
Nikita Titov's avatar
Nikita Titov committed
2163
            return self
2164
        if self.handle is None:
Guolin Ke's avatar
Guolin Ke committed
2165
            self._predictor = predictor
2166
2167
2168
2169
2170
2171
        elif self.data is not None:
            self._predictor = predictor
            self._set_init_score_by_predictor(self._predictor, self.data)
        elif self.used_indices is not None and self.reference is not None and self.reference.data is not None:
            self._predictor = predictor
            self._set_init_score_by_predictor(self._predictor, self.reference.data, self.used_indices)
Guolin Ke's avatar
Guolin Ke committed
2172
        else:
2173
2174
            raise LightGBMError("Cannot set predictor after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
2175
        return self
Guolin Ke's avatar
Guolin Ke committed
2176

2177
    def set_reference(self, reference: "Dataset") -> "Dataset":
2178
        """Set reference Dataset.
Guolin Ke's avatar
Guolin Ke committed
2179
2180
2181
2182

        Parameters
        ----------
        reference : Dataset
2183
            Reference that is used as a template to construct the current Dataset.
Nikita Titov's avatar
Nikita Titov committed
2184
2185
2186
2187
2188

        Returns
        -------
        self : Dataset
            Dataset with set reference.
Guolin Ke's avatar
Guolin Ke committed
2189
        """
2190
2191
2192
        self.set_categorical_feature(reference.categorical_feature) \
            .set_feature_name(reference.feature_name) \
            ._set_predictor(reference._predictor)
2193
        # we're done if self and reference share a common upstream reference
2194
        if self.get_ref_chain().intersection(reference.get_ref_chain()):
Nikita Titov's avatar
Nikita Titov committed
2195
            return self
Guolin Ke's avatar
Guolin Ke committed
2196
2197
        if self.data is not None:
            self.reference = reference
Nikita Titov's avatar
Nikita Titov committed
2198
            return self._free_handle()
Guolin Ke's avatar
Guolin Ke committed
2199
        else:
2200
2201
            raise LightGBMError("Cannot set reference after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
Guolin Ke's avatar
Guolin Ke committed
2202

2203
    def set_feature_name(self, feature_name: List[str]) -> "Dataset":
2204
        """Set feature name.
Guolin Ke's avatar
Guolin Ke committed
2205
2206
2207

        Parameters
        ----------
2208
        feature_name : list of str
2209
            Feature names.
Nikita Titov's avatar
Nikita Titov committed
2210
2211
2212
2213
2214

        Returns
        -------
        self : Dataset
            Dataset with set feature name.
Guolin Ke's avatar
Guolin Ke committed
2215
        """
2216
2217
        if feature_name != 'auto':
            self.feature_name = feature_name
2218
        if self.handle is not None and feature_name is not None and feature_name != 'auto':
wxchan's avatar
wxchan committed
2219
            if len(feature_name) != self.num_feature():
2220
                raise ValueError(f"Length of feature_name({len(feature_name)}) and num_feature({self.num_feature()}) don't match")
2221
            c_feature_name = [c_str(name) for name in feature_name]
wxchan's avatar
wxchan committed
2222
2223
2224
            _safe_call(_LIB.LGBM_DatasetSetFeatureNames(
                self.handle,
                c_array(ctypes.c_char_p, c_feature_name),
Guolin Ke's avatar
Guolin Ke committed
2225
                ctypes.c_int(len(feature_name))))
Nikita Titov's avatar
Nikita Titov committed
2226
        return self
Guolin Ke's avatar
Guolin Ke committed
2227

2228
    def set_label(self, label) -> "Dataset":
2229
        """Set label of Dataset.
Guolin Ke's avatar
Guolin Ke committed
2230
2231
2232

        Parameters
        ----------
2233
        label : list, numpy 1-D array, pandas Series / one-column DataFrame or None
2234
            The label information to be set into Dataset.
Nikita Titov's avatar
Nikita Titov committed
2235
2236
2237
2238
2239

        Returns
        -------
        self : Dataset
            Dataset with set label.
Guolin Ke's avatar
Guolin Ke committed
2240
2241
        """
        self.label = label
2242
        if self.handle is not None:
2243
            label = list_to_1d_numpy(_label_from_pandas(label), name='label')
wxchan's avatar
wxchan committed
2244
            self.set_field('label', label)
2245
            self.label = self.get_field('label')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
2246
        return self
Guolin Ke's avatar
Guolin Ke committed
2247

2248
    def set_weight(self, weight) -> "Dataset":
2249
        """Set weight of each instance.
Guolin Ke's avatar
Guolin Ke committed
2250
2251
2252

        Parameters
        ----------
2253
        weight : list, numpy 1-D array, pandas Series or None
2254
            Weight to be set for each data point. Weights should be non-negative.
Nikita Titov's avatar
Nikita Titov committed
2255
2256
2257
2258
2259

        Returns
        -------
        self : Dataset
            Dataset with set weight.
Guolin Ke's avatar
Guolin Ke committed
2260
        """
2261
2262
        if weight is not None and np.all(weight == 1):
            weight = None
Guolin Ke's avatar
Guolin Ke committed
2263
        self.weight = weight
2264
        if self.handle is not None and weight is not None:
wxchan's avatar
wxchan committed
2265
2266
            weight = list_to_1d_numpy(weight, name='weight')
            self.set_field('weight', weight)
2267
            self.weight = self.get_field('weight')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
2268
        return self
Guolin Ke's avatar
Guolin Ke committed
2269

2270
    def set_init_score(self, init_score) -> "Dataset":
2271
        """Set init score of Booster to start from.
Guolin Ke's avatar
Guolin Ke committed
2272
2273
2274

        Parameters
        ----------
2275
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None
2276
            Init score for Booster.
Nikita Titov's avatar
Nikita Titov committed
2277
2278
2279
2280
2281

        Returns
        -------
        self : Dataset
            Dataset with set init score.
Guolin Ke's avatar
Guolin Ke committed
2282
2283
        """
        self.init_score = init_score
2284
        if self.handle is not None and init_score is not None:
wxchan's avatar
wxchan committed
2285
            self.set_field('init_score', init_score)
2286
            self.init_score = self.get_field('init_score')  # original values can be modified at cpp side
Nikita Titov's avatar
Nikita Titov committed
2287
        return self
Guolin Ke's avatar
Guolin Ke committed
2288

2289
    def set_group(self, group) -> "Dataset":
2290
        """Set group size of Dataset (used for ranking).
Guolin Ke's avatar
Guolin Ke committed
2291
2292
2293

        Parameters
        ----------
2294
        group : list, numpy 1-D array, pandas Series or None
2295
2296
2297
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
2298
2299
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
Nikita Titov's avatar
Nikita Titov committed
2300
2301
2302
2303
2304

        Returns
        -------
        self : Dataset
            Dataset with set group.
Guolin Ke's avatar
Guolin Ke committed
2305
2306
        """
        self.group = group
2307
        if self.handle is not None and group is not None:
wxchan's avatar
wxchan committed
2308
2309
            group = list_to_1d_numpy(group, np.int32, name='group')
            self.set_field('group', group)
Nikita Titov's avatar
Nikita Titov committed
2310
        return self
Guolin Ke's avatar
Guolin Ke committed
2311

2312
    def get_feature_name(self) -> List[str]:
2313
2314
2315
2316
        """Get the names of columns (features) in the Dataset.

        Returns
        -------
2317
        feature_names : list of str
2318
2319
2320
2321
2322
2323
2324
2325
            The names of columns (features) in the Dataset.
        """
        if self.handle is None:
            raise LightGBMError("Cannot get feature_name before construct dataset")
        num_feature = self.num_feature()
        tmp_out_len = ctypes.c_int(0)
        reserved_string_buffer_size = 255
        required_string_buffer_size = ctypes.c_size_t(0)
2326
        string_buffers = [ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(num_feature)]
2327
2328
2329
        ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
        _safe_call(_LIB.LGBM_DatasetGetFeatureNames(
            self.handle,
2330
            ctypes.c_int(num_feature),
2331
            ctypes.byref(tmp_out_len),
2332
            ctypes.c_size_t(reserved_string_buffer_size),
2333
2334
2335
2336
            ctypes.byref(required_string_buffer_size),
            ptr_string_buffers))
        if num_feature != tmp_out_len.value:
            raise ValueError("Length of feature names doesn't equal with num_feature")
2337
2338
2339
2340
2341
2342
2343
2344
2345
2346
2347
2348
        actual_string_buffer_size = required_string_buffer_size.value
        # if buffer length is not long enough, reallocate buffers
        if reserved_string_buffer_size < actual_string_buffer_size:
            string_buffers = [ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(num_feature)]
            ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
            _safe_call(_LIB.LGBM_DatasetGetFeatureNames(
                self.handle,
                ctypes.c_int(num_feature),
                ctypes.byref(tmp_out_len),
                ctypes.c_size_t(actual_string_buffer_size),
                ctypes.byref(required_string_buffer_size),
                ptr_string_buffers))
2349
        return [string_buffers[i].value.decode('utf-8') for i in range(num_feature)]
2350

2351
    def get_label(self) -> Optional[np.ndarray]:
2352
        """Get the label of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2353
2354
2355

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2356
        label : numpy array or None
2357
            The label information from the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2358
        """
2359
        if self.label is None:
wxchan's avatar
wxchan committed
2360
            self.label = self.get_field('label')
Guolin Ke's avatar
Guolin Ke committed
2361
2362
        return self.label

2363
    def get_weight(self) -> Optional[np.ndarray]:
2364
        """Get the weight of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2365
2366
2367

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2368
        weight : numpy array or None
2369
            Weight for each data point from the Dataset. Weights should be non-negative.
Guolin Ke's avatar
Guolin Ke committed
2370
        """
2371
        if self.weight is None:
wxchan's avatar
wxchan committed
2372
            self.weight = self.get_field('weight')
Guolin Ke's avatar
Guolin Ke committed
2373
2374
        return self.weight

2375
    def get_init_score(self) -> Optional[np.ndarray]:
2376
        """Get the initial score of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2377
2378
2379

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2380
        init_score : numpy array or None
2381
            Init score of Booster.
Guolin Ke's avatar
Guolin Ke committed
2382
        """
2383
        if self.init_score is None:
wxchan's avatar
wxchan committed
2384
            self.init_score = self.get_field('init_score')
Guolin Ke's avatar
Guolin Ke committed
2385
2386
        return self.init_score

2387
2388
2389
2390
2391
    def get_data(self):
        """Get the raw data of the Dataset.

        Returns
        -------
2392
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame, scipy.sparse, Sequence, list of Sequence or list of numpy array or None
2393
2394
2395
2396
            Raw data used in the Dataset construction.
        """
        if self.handle is None:
            raise Exception("Cannot get data before construct Dataset")
Guolin Ke's avatar
Guolin Ke committed
2397
2398
2399
2400
2401
        if self.need_slice and self.used_indices is not None and self.reference is not None:
            self.data = self.reference.data
            if self.data is not None:
                if isinstance(self.data, np.ndarray) or scipy.sparse.issparse(self.data):
                    self.data = self.data[self.used_indices, :]
2402
                elif isinstance(self.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2403
                    self.data = self.data.iloc[self.used_indices].copy()
2404
                elif isinstance(self.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
2405
                    self.data = self.data[self.used_indices, :]
2406
2407
2408
2409
                elif isinstance(self.data, Sequence):
                    self.data = self.data[self.used_indices]
                elif isinstance(self.data, list) and len(self.data) > 0 and all(isinstance(x, Sequence) for x in self.data):
                    self.data = np.array([row for row in self._yield_row_from_seqlist(self.data, self.used_indices)])
Guolin Ke's avatar
Guolin Ke committed
2410
                else:
2411
2412
                    _log_warning(f"Cannot subset {type(self.data).__name__} type of raw data.\n"
                                 "Returning original raw data")
2413
            self.need_slice = False
Guolin Ke's avatar
Guolin Ke committed
2414
2415
2416
        if self.data is None:
            raise LightGBMError("Cannot call `get_data` after freed raw data, "
                                "set free_raw_data=False when construct Dataset to avoid this.")
2417
2418
        return self.data

Guolin Ke's avatar
Guolin Ke committed
2419
    def get_group(self):
2420
        """Get the group of the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2421
2422
2423

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
2424
        group : numpy array or None
2425
2426
2427
            Group/query data.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
2428
2429
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
Guolin Ke's avatar
Guolin Ke committed
2430
        """
2431
        if self.group is None:
wxchan's avatar
wxchan committed
2432
            self.group = self.get_field('group')
Guolin Ke's avatar
Guolin Ke committed
2433
2434
            if self.group is not None:
                # group data from LightGBM is boundaries data, need to convert to group size
Nikita Titov's avatar
Nikita Titov committed
2435
                self.group = np.diff(self.group)
Guolin Ke's avatar
Guolin Ke committed
2436
2437
        return self.group

2438
    def num_data(self) -> int:
2439
        """Get the number of rows in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2440
2441
2442

        Returns
        -------
2443
2444
        number_of_rows : int
            The number of rows in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2445
        """
2446
        if self.handle is not None:
2447
            ret = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2448
2449
2450
            _safe_call(_LIB.LGBM_DatasetGetNumData(self.handle,
                                                   ctypes.byref(ret)))
            return ret.value
Guolin Ke's avatar
Guolin Ke committed
2451
        else:
2452
            raise LightGBMError("Cannot get num_data before construct dataset")
Guolin Ke's avatar
Guolin Ke committed
2453

2454
    def num_feature(self) -> int:
2455
        """Get the number of columns (features) in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2456
2457
2458

        Returns
        -------
2459
2460
        number_of_columns : int
            The number of columns (features) in the Dataset.
Guolin Ke's avatar
Guolin Ke committed
2461
        """
2462
        if self.handle is not None:
2463
            ret = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2464
2465
2466
            _safe_call(_LIB.LGBM_DatasetGetNumFeature(self.handle,
                                                      ctypes.byref(ret)))
            return ret.value
Guolin Ke's avatar
Guolin Ke committed
2467
        else:
2468
            raise LightGBMError("Cannot get num_feature before construct dataset")
Guolin Ke's avatar
Guolin Ke committed
2469

2470
    def feature_num_bin(self, feature: Union[int, str]) -> int:
2471
2472
2473
2474
        """Get the number of bins for a feature.

        Parameters
        ----------
2475
2476
        feature : int or str
            Index or name of the feature.
2477
2478
2479
2480
2481
2482
2483

        Returns
        -------
        number_of_bins : int
            The number of constructed bins for the feature in the Dataset.
        """
        if self.handle is not None:
2484
2485
            if isinstance(feature, str):
                feature = self.feature_name.index(feature)
2486
2487
2488
2489
2490
2491
2492
2493
            ret = ctypes.c_int(0)
            _safe_call(_LIB.LGBM_DatasetGetFeatureNumBin(self.handle,
                                                         ctypes.c_int(feature),
                                                         ctypes.byref(ret)))
            return ret.value
        else:
            raise LightGBMError("Cannot get feature_num_bin before construct dataset")

2494
    def get_ref_chain(self, ref_limit: int = 100) -> Set["Dataset"]:
2495
2496
2497
2498
2499
        """Get a chain of Dataset objects.

        Starts with r, then goes to r.reference (if exists),
        then to r.reference.reference, etc.
        until we hit ``ref_limit`` or a reference loop.
2500
2501
2502
2503
2504

        Parameters
        ----------
        ref_limit : int, optional (default=100)
            The limit number of references.
2505
2506
2507

        Returns
        -------
2508
2509
2510
        ref_chain : set of Dataset
            Chain of references of the Datasets.
        """
2511
        head = self
2512
        ref_chain = set()
2513
2514
        while len(ref_chain) < ref_limit:
            if isinstance(head, Dataset):
2515
                ref_chain.add(head)
2516
2517
2518
2519
2520
2521
                if (head.reference is not None) and (head.reference not in ref_chain):
                    head = head.reference
                else:
                    break
            else:
                break
Nikita Titov's avatar
Nikita Titov committed
2522
        return ref_chain
2523

2524
    def add_features_from(self, other: "Dataset") -> "Dataset":
2525
2526
2527
2528
2529
2530
2531
2532
2533
2534
2535
2536
2537
2538
2539
2540
2541
        """Add features from other Dataset to the current Dataset.

        Both Datasets must be constructed before calling this method.

        Parameters
        ----------
        other : Dataset
            The Dataset to take features from.

        Returns
        -------
        self : Dataset
            Dataset with the new features added.
        """
        if self.handle is None or other.handle is None:
            raise ValueError('Both source and target Datasets must be constructed before adding features')
        _safe_call(_LIB.LGBM_DatasetAddFeaturesFrom(self.handle, other.handle))
Guolin Ke's avatar
Guolin Ke committed
2542
2543
2544
2545
2546
2547
2548
2549
2550
2551
        was_none = self.data is None
        old_self_data_type = type(self.data).__name__
        if other.data is None:
            self.data = None
        elif self.data is not None:
            if isinstance(self.data, np.ndarray):
                if isinstance(other.data, np.ndarray):
                    self.data = np.hstack((self.data, other.data))
                elif scipy.sparse.issparse(other.data):
                    self.data = np.hstack((self.data, other.data.toarray()))
2552
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2553
                    self.data = np.hstack((self.data, other.data.values))
2554
                elif isinstance(other.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
2555
2556
2557
2558
2559
2560
2561
                    self.data = np.hstack((self.data, other.data.to_numpy()))
                else:
                    self.data = None
            elif scipy.sparse.issparse(self.data):
                sparse_format = self.data.getformat()
                if isinstance(other.data, np.ndarray) or scipy.sparse.issparse(other.data):
                    self.data = scipy.sparse.hstack((self.data, other.data), format=sparse_format)
2562
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2563
                    self.data = scipy.sparse.hstack((self.data, other.data.values), format=sparse_format)
2564
                elif isinstance(other.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
2565
2566
2567
                    self.data = scipy.sparse.hstack((self.data, other.data.to_numpy()), format=sparse_format)
                else:
                    self.data = None
2568
            elif isinstance(self.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2569
2570
                if not PANDAS_INSTALLED:
                    raise LightGBMError("Cannot add features to DataFrame type of raw data "
2571
2572
                                        "without pandas installed. "
                                        "Install pandas and restart your session.")
Guolin Ke's avatar
Guolin Ke committed
2573
                if isinstance(other.data, np.ndarray):
2574
                    self.data = concat((self.data, pd_DataFrame(other.data)),
Guolin Ke's avatar
Guolin Ke committed
2575
2576
                                       axis=1, ignore_index=True)
                elif scipy.sparse.issparse(other.data):
2577
                    self.data = concat((self.data, pd_DataFrame(other.data.toarray())),
Guolin Ke's avatar
Guolin Ke committed
2578
                                       axis=1, ignore_index=True)
2579
                elif isinstance(other.data, pd_DataFrame):
Guolin Ke's avatar
Guolin Ke committed
2580
2581
                    self.data = concat((self.data, other.data),
                                       axis=1, ignore_index=True)
2582
2583
                elif isinstance(other.data, dt_DataTable):
                    self.data = concat((self.data, pd_DataFrame(other.data.to_numpy())),
Guolin Ke's avatar
Guolin Ke committed
2584
2585
2586
                                       axis=1, ignore_index=True)
                else:
                    self.data = None
2587
            elif isinstance(self.data, dt_DataTable):
Guolin Ke's avatar
Guolin Ke committed
2588
                if isinstance(other.data, np.ndarray):
2589
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data)))
Guolin Ke's avatar
Guolin Ke committed
2590
                elif scipy.sparse.issparse(other.data):
2591
2592
2593
2594
2595
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.toarray())))
                elif isinstance(other.data, pd_DataFrame):
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.values)))
                elif isinstance(other.data, dt_DataTable):
                    self.data = dt_DataTable(np.hstack((self.data.to_numpy(), other.data.to_numpy())))
Guolin Ke's avatar
Guolin Ke committed
2596
2597
2598
2599
2600
                else:
                    self.data = None
            else:
                self.data = None
        if self.data is None:
2601
2602
            err_msg = (f"Cannot add features from {type(other.data).__name__} type of raw data to "
                       f"{old_self_data_type} type of raw data.\n")
Guolin Ke's avatar
Guolin Ke committed
2603
2604
            err_msg += ("Set free_raw_data=False when construct Dataset to avoid this"
                        if was_none else "Freeing raw data")
2605
            _log_warning(err_msg)
Guolin Ke's avatar
Guolin Ke committed
2606
        self.feature_name = self.get_feature_name()
2607
2608
        _log_warning("Reseting categorical features.\n"
                     "You can set new categorical features via ``set_categorical_feature`` method")
Guolin Ke's avatar
Guolin Ke committed
2609
2610
        self.categorical_feature = "auto"
        self.pandas_categorical = None
2611
2612
        return self

2613
    def _dump_text(self, filename: Union[str, Path]) -> "Dataset":
2614
2615
2616
2617
2618
2619
        """Save Dataset to a text file.

        This format cannot be loaded back in by LightGBM, but is useful for debugging purposes.

        Parameters
        ----------
2620
        filename : str or pathlib.Path
2621
2622
2623
2624
2625
2626
2627
2628
2629
            Name of the output file.

        Returns
        -------
        self : Dataset
            Returns self.
        """
        _safe_call(_LIB.LGBM_DatasetDumpText(
            self.construct().handle,
2630
            c_str(str(filename))))
2631
2632
        return self

wxchan's avatar
wxchan committed
2633

2634
2635
2636
2637
2638
2639
_LGBM_CustomObjectiveFunction = Callable[
    [np.ndarray, Dataset],
    Tuple[np.ndarray, np.ndarray]
]


2640
class Booster:
2641
    """Booster in LightGBM."""
2642

2643
2644
2645
2646
2647
2648
2649
    def __init__(
        self,
        params: Optional[Dict[str, Any]] = None,
        train_set: Optional[Dataset] = None,
        model_file: Optional[Union[str, Path]] = None,
        model_str: Optional[str] = None
    ):
2650
        """Initialize the Booster.
wxchan's avatar
wxchan committed
2651
2652
2653

        Parameters
        ----------
Nikita Titov's avatar
Nikita Titov committed
2654
        params : dict or None, optional (default=None)
2655
2656
2657
            Parameters for Booster.
        train_set : Dataset or None, optional (default=None)
            Training dataset.
2658
        model_file : str, pathlib.Path or None, optional (default=None)
wxchan's avatar
wxchan committed
2659
            Path to the model file.
2660
        model_str : str or None, optional (default=None)
2661
            Model will be loaded from this string.
wxchan's avatar
wxchan committed
2662
        """
2663
        self.handle = None
2664
        self.network = False
wxchan's avatar
wxchan committed
2665
        self.__need_reload_eval_info = True
2666
        self._train_data_name = "training"
2667
        self.__set_objective_to_none = False
wxchan's avatar
wxchan committed
2668
        self.best_iteration = -1
wxchan's avatar
wxchan committed
2669
        self.best_score = {}
2670
        params = {} if params is None else deepcopy(params)
wxchan's avatar
wxchan committed
2671
        if train_set is not None:
2672
            # Training task
wxchan's avatar
wxchan committed
2673
            if not isinstance(train_set, Dataset):
2674
                raise TypeError(f'Training data should be Dataset instance, met {type(train_set).__name__}')
2675
2676
2677
2678
2679
2680
2681
2682
2683
2684
2685
2686
2687
2688
2689
2690
2691
2692
2693
2694
2695
2696
2697
2698
2699
2700
2701
2702
2703
2704
2705
2706
2707
2708
            params = _choose_param_value(
                main_param_name="machines",
                params=params,
                default_value=None
            )
            # if "machines" is given, assume user wants to do distributed learning, and set up network
            if params["machines"] is None:
                params.pop("machines", None)
            else:
                machines = params["machines"]
                if isinstance(machines, str):
                    num_machines_from_machine_list = len(machines.split(','))
                elif isinstance(machines, (list, set)):
                    num_machines_from_machine_list = len(machines)
                    machines = ','.join(machines)
                else:
                    raise ValueError("Invalid machines in params.")

                params = _choose_param_value(
                    main_param_name="num_machines",
                    params=params,
                    default_value=num_machines_from_machine_list
                )
                params = _choose_param_value(
                    main_param_name="local_listen_port",
                    params=params,
                    default_value=12400
                )
                self.set_network(
                    machines=machines,
                    local_listen_port=params["local_listen_port"],
                    listen_time_out=params.get("time_out", 120),
                    num_machines=params["num_machines"]
                )
2709
            # construct booster object
2710
2711
2712
2713
            train_set.construct()
            # copy the parameters from train_set
            params.update(train_set.get_params())
            params_str = param_dict_to_str(params)
2714
            self.handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
2715
            _safe_call(_LIB.LGBM_BoosterCreate(
2716
                train_set.handle,
wxchan's avatar
wxchan committed
2717
2718
                c_str(params_str),
                ctypes.byref(self.handle)))
2719
            # save reference to data
wxchan's avatar
wxchan committed
2720
2721
2722
2723
            self.train_set = train_set
            self.valid_sets = []
            self.name_valid_sets = []
            self.__num_dataset = 1
Guolin Ke's avatar
Guolin Ke committed
2724
2725
            self.__init_predictor = train_set._predictor
            if self.__init_predictor is not None:
wxchan's avatar
wxchan committed
2726
2727
                _safe_call(_LIB.LGBM_BoosterMerge(
                    self.handle,
Guolin Ke's avatar
Guolin Ke committed
2728
                    self.__init_predictor.handle))
Guolin Ke's avatar
Guolin Ke committed
2729
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2730
2731
2732
2733
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
                self.handle,
                ctypes.byref(out_num_class)))
            self.__num_class = out_num_class.value
2734
            # buffer for inner predict
wxchan's avatar
wxchan committed
2735
2736
2737
            self.__inner_predict_buffer = [None]
            self.__is_predicted_cur_iter = [False]
            self.__get_eval_info()
2738
            self.pandas_categorical = train_set.pandas_categorical
2739
            self.train_set_version = train_set.version
wxchan's avatar
wxchan committed
2740
        elif model_file is not None:
2741
            # Prediction task
Guolin Ke's avatar
Guolin Ke committed
2742
            out_num_iterations = ctypes.c_int(0)
2743
            self.handle = ctypes.c_void_p()
wxchan's avatar
wxchan committed
2744
            _safe_call(_LIB.LGBM_BoosterCreateFromModelfile(
2745
                c_str(str(model_file)),
wxchan's avatar
wxchan committed
2746
2747
                ctypes.byref(out_num_iterations),
                ctypes.byref(self.handle)))
Guolin Ke's avatar
Guolin Ke committed
2748
            out_num_class = ctypes.c_int(0)
wxchan's avatar
wxchan committed
2749
2750
2751
2752
            _safe_call(_LIB.LGBM_BoosterGetNumClasses(
                self.handle,
                ctypes.byref(out_num_class)))
            self.__num_class = out_num_class.value
2753
            self.pandas_categorical = _load_pandas_categorical(file_name=model_file)
2754
        elif model_str is not None:
2755
            self.model_from_string(model_str)
wxchan's avatar
wxchan committed
2756
        else:
2757
2758
            raise TypeError('Need at least one training dataset or model file or model string '
                            'to create Booster instance')
2759
        self.params = params
wxchan's avatar
wxchan committed
2760

2761
    def __del__(self) -> None:
2762
2763
2764
2765
2766
2767
2768
2769
2770
2771
        try:
            if self.network:
                self.free_network()
        except AttributeError:
            pass
        try:
            if self.handle is not None:
                _safe_call(_LIB.LGBM_BoosterFree(self.handle))
        except AttributeError:
            pass
wxchan's avatar
wxchan committed
2772

2773
    def __copy__(self) -> "Booster":
wxchan's avatar
wxchan committed
2774
2775
        return self.__deepcopy__(None)

2776
    def __deepcopy__(self, _) -> "Booster":
2777
        model_str = self.model_to_string(num_iteration=-1)
2778
        booster = Booster(model_str=model_str)
2779
        return booster
wxchan's avatar
wxchan committed
2780

2781
    def __getstate__(self) -> Dict[str, Any]:
wxchan's avatar
wxchan committed
2782
2783
2784
2785
2786
        this = self.__dict__.copy()
        handle = this['handle']
        this.pop('train_set', None)
        this.pop('valid_sets', None)
        if handle is not None:
2787
            this["handle"] = self.model_to_string(num_iteration=-1)
wxchan's avatar
wxchan committed
2788
2789
        return this

2790
    def __setstate__(self, state: Dict[str, Any]) -> None:
2791
2792
        model_str = state.get('handle', None)
        if model_str is not None:
wxchan's avatar
wxchan committed
2793
            handle = ctypes.c_void_p()
Guolin Ke's avatar
Guolin Ke committed
2794
            out_num_iterations = ctypes.c_int(0)
2795
2796
2797
2798
            _safe_call(_LIB.LGBM_BoosterLoadModelFromString(
                c_str(model_str),
                ctypes.byref(out_num_iterations),
                ctypes.byref(handle)))
wxchan's avatar
wxchan committed
2799
2800
2801
            state['handle'] = handle
        self.__dict__.update(state)

2802
    def free_dataset(self) -> "Booster":
Nikita Titov's avatar
Nikita Titov committed
2803
2804
2805
2806
2807
2808
2809
        """Free Booster's Datasets.

        Returns
        -------
        self : Booster
            Booster without Datasets.
        """
wxchan's avatar
wxchan committed
2810
2811
        self.__dict__.pop('train_set', None)
        self.__dict__.pop('valid_sets', None)
2812
        self.__num_dataset = 0
Nikita Titov's avatar
Nikita Titov committed
2813
        return self
wxchan's avatar
wxchan committed
2814

2815
    def _free_buffer(self) -> "Booster":
2816
2817
        self.__inner_predict_buffer = []
        self.__is_predicted_cur_iter = []
Nikita Titov's avatar
Nikita Titov committed
2818
        return self
2819

2820
2821
2822
2823
2824
2825
2826
    def set_network(
        self,
        machines: Union[List[str], Set[str], str],
        local_listen_port: int = 12400,
        listen_time_out: int = 120,
        num_machines: int = 1
    ) -> "Booster":
2827
2828
2829
2830
        """Set the network configuration.

        Parameters
        ----------
2831
        machines : list, set or str
2832
            Names of machines.
Nikita Titov's avatar
Nikita Titov committed
2833
        local_listen_port : int, optional (default=12400)
2834
            TCP listen port for local machines.
Nikita Titov's avatar
Nikita Titov committed
2835
        listen_time_out : int, optional (default=120)
2836
            Socket time-out in minutes.
Nikita Titov's avatar
Nikita Titov committed
2837
        num_machines : int, optional (default=1)
2838
            The number of machines for distributed learning application.
Nikita Titov's avatar
Nikita Titov committed
2839
2840
2841
2842
2843

        Returns
        -------
        self : Booster
            Booster with set network.
2844
        """
2845
2846
        if isinstance(machines, (list, set)):
            machines = ','.join(machines)
2847
2848
2849
2850
2851
        _safe_call(_LIB.LGBM_NetworkInit(c_str(machines),
                                         ctypes.c_int(local_listen_port),
                                         ctypes.c_int(listen_time_out),
                                         ctypes.c_int(num_machines)))
        self.network = True
Nikita Titov's avatar
Nikita Titov committed
2852
        return self
2853

2854
    def free_network(self) -> "Booster":
Nikita Titov's avatar
Nikita Titov committed
2855
2856
2857
2858
2859
2860
2861
        """Free Booster's network.

        Returns
        -------
        self : Booster
            Booster with freed network.
        """
2862
2863
        _safe_call(_LIB.LGBM_NetworkFree())
        self.network = False
Nikita Titov's avatar
Nikita Titov committed
2864
        return self
2865

2866
    def trees_to_dataframe(self) -> pd_DataFrame:
2867
2868
        """Parse the fitted model and return in an easy-to-read pandas DataFrame.

2869
2870
2871
2872
        The returned DataFrame has the following columns.

            - ``tree_index`` : int64, which tree a node belongs to. 0-based, so a value of ``6``, for example, means "this node is in the 7th tree".
            - ``node_depth`` : int64, how far a node is from the root of the tree. The root node has a value of ``1``, its direct children are ``2``, etc.
2873
2874
2875
2876
2877
            - ``node_index`` : str, unique identifier for a node.
            - ``left_child`` : str, ``node_index`` of the child node to the left of a split. ``None`` for leaf nodes.
            - ``right_child`` : str, ``node_index`` of the child node to the right of a split. ``None`` for leaf nodes.
            - ``parent_index`` : str, ``node_index`` of this node's parent. ``None`` for the root node.
            - ``split_feature`` : str, name of the feature used for splitting. ``None`` for leaf nodes.
2878
2879
            - ``split_gain`` : float64, gain from adding this split to the tree. ``NaN`` for leaf nodes.
            - ``threshold`` : float64, value of the feature used to decide which side of the split a record will go down. ``NaN`` for leaf nodes.
2880
            - ``decision_type`` : str, logical operator describing how to compare a value to ``threshold``.
2881
2882
              For example, ``split_feature = "Column_10", threshold = 15, decision_type = "<="`` means that
              records where ``Column_10 <= 15`` follow the left side of the split, otherwise follows the right side of the split. ``None`` for leaf nodes.
2883
2884
            - ``missing_direction`` : str, split direction that missing values should go to. ``None`` for leaf nodes.
            - ``missing_type`` : str, describes what types of values are treated as missing.
2885
            - ``value`` : float64, predicted value for this leaf node, multiplied by the learning rate.
2886
            - ``weight`` : float64 or int64, sum of Hessian (second-order derivative of objective), summed over observations that fall in this node.
2887
2888
            - ``count`` : int64, number of records in the training data that fall into this node.

2889
2890
2891
2892
2893
2894
        Returns
        -------
        result : pandas DataFrame
            Returns a pandas DataFrame of the parsed model.
        """
        if not PANDAS_INSTALLED:
2895
2896
            raise LightGBMError('This method cannot be run without pandas installed. '
                                'You must install pandas and restart your session to use this method.')
2897
2898
2899
2900
2901
2902
2903
2904
2905
2906
2907

        if self.num_trees() == 0:
            raise LightGBMError('There are no trees in this Booster and thus nothing to parse')

        def _is_split_node(tree):
            return 'split_index' in tree.keys()

        def create_node_record(tree, node_depth=1, tree_index=None,
                               feature_names=None, parent_node=None):

            def _get_node_index(tree, tree_index):
2908
                tree_num = f'{tree_index}-' if tree_index is not None else ''
2909
2910
2911
                is_split = _is_split_node(tree)
                node_type = 'S' if is_split else 'L'
                # if a single node tree it won't have `leaf_index` so return 0
2912
2913
                node_num = tree.get('split_index' if is_split else 'leaf_index', 0)
                return f"{tree_num}{node_type}{node_num}"
2914
2915
2916
2917
2918
2919
2920
2921
2922
2923
2924
2925

            def _get_split_feature(tree, feature_names):
                if _is_split_node(tree):
                    if feature_names is not None:
                        feature_name = feature_names[tree['split_feature']]
                    else:
                        feature_name = tree['split_feature']
                else:
                    feature_name = None
                return feature_name

            def _is_single_node_tree(tree):
2926
                return set(tree.keys()) == {'leaf_value'}
2927
2928
2929
2930
2931
2932
2933
2934
2935
2936
2937
2938
2939
2940
2941
2942
2943
2944
2945
2946
2947
2948
2949
2950
2951
2952
2953
2954
2955
2956
2957
2958
2959
2960
2961
2962
2963
2964
2965
2966
2967
2968
2969
2970
2971
2972
2973
2974
2975
2976
2977
2978
2979
2980
2981
2982
2983
2984
2985
2986
2987
2988
2989
2990
2991
2992
2993
2994
2995
2996
2997
2998
2999

            # Create the node record, and populate universal data members
            node = OrderedDict()
            node['tree_index'] = tree_index
            node['node_depth'] = node_depth
            node['node_index'] = _get_node_index(tree, tree_index)
            node['left_child'] = None
            node['right_child'] = None
            node['parent_index'] = parent_node
            node['split_feature'] = _get_split_feature(tree, feature_names)
            node['split_gain'] = None
            node['threshold'] = None
            node['decision_type'] = None
            node['missing_direction'] = None
            node['missing_type'] = None
            node['value'] = None
            node['weight'] = None
            node['count'] = None

            # Update values to reflect node type (leaf or split)
            if _is_split_node(tree):
                node['left_child'] = _get_node_index(tree['left_child'], tree_index)
                node['right_child'] = _get_node_index(tree['right_child'], tree_index)
                node['split_gain'] = tree['split_gain']
                node['threshold'] = tree['threshold']
                node['decision_type'] = tree['decision_type']
                node['missing_direction'] = 'left' if tree['default_left'] else 'right'
                node['missing_type'] = tree['missing_type']
                node['value'] = tree['internal_value']
                node['weight'] = tree['internal_weight']
                node['count'] = tree['internal_count']
            else:
                node['value'] = tree['leaf_value']
                if not _is_single_node_tree(tree):
                    node['weight'] = tree['leaf_weight']
                    node['count'] = tree['leaf_count']

            return node

        def tree_dict_to_node_list(tree, node_depth=1, tree_index=None,
                                   feature_names=None, parent_node=None):

            node = create_node_record(tree,
                                      node_depth=node_depth,
                                      tree_index=tree_index,
                                      feature_names=feature_names,
                                      parent_node=parent_node)

            res = [node]

            if _is_split_node(tree):
                # traverse the next level of the tree
                children = ['left_child', 'right_child']
                for child in children:
                    subtree_list = tree_dict_to_node_list(
                        tree[child],
                        node_depth=node_depth + 1,
                        tree_index=tree_index,
                        feature_names=feature_names,
                        parent_node=node['node_index'])
                    # In tree format, "subtree_list" is a list of node records (dicts),
                    # and we add node to the list.
                    res.extend(subtree_list)
            return res

        model_dict = self.dump_model()
        feature_names = model_dict['feature_names']
        model_list = []
        for tree in model_dict['tree_info']:
            model_list.extend(tree_dict_to_node_list(tree['tree_structure'],
                                                     tree_index=tree['tree_index'],
                                                     feature_names=feature_names))

3000
        return pd_DataFrame(model_list, columns=model_list[0].keys())
3001

3002
    def set_train_data_name(self, name: str) -> "Booster":
3003
3004
3005
3006
        """Set the name to the training Dataset.

        Parameters
        ----------
3007
        name : str
Nikita Titov's avatar
Nikita Titov committed
3008
3009
3010
3011
3012
3013
            Name for the training Dataset.

        Returns
        -------
        self : Booster
            Booster with set training Dataset name.
3014
        """
3015
        self._train_data_name = name
Nikita Titov's avatar
Nikita Titov committed
3016
        return self
wxchan's avatar
wxchan committed
3017

3018
    def add_valid(self, data: Dataset, name: str) -> "Booster":
3019
        """Add validation data.
wxchan's avatar
wxchan committed
3020
3021
3022
3023

        Parameters
        ----------
        data : Dataset
3024
            Validation data.
3025
        name : str
3026
            Name of validation data.
Nikita Titov's avatar
Nikita Titov committed
3027
3028
3029
3030
3031

        Returns
        -------
        self : Booster
            Booster with set validation data.
wxchan's avatar
wxchan committed
3032
        """
Guolin Ke's avatar
Guolin Ke committed
3033
        if not isinstance(data, Dataset):
3034
            raise TypeError(f'Validation data should be Dataset instance, met {type(data).__name__}')
Guolin Ke's avatar
Guolin Ke committed
3035
        if data._predictor is not self.__init_predictor:
3036
3037
            raise LightGBMError("Add validation data failed, "
                                "you should use same predictor for these data")
wxchan's avatar
wxchan committed
3038
3039
        _safe_call(_LIB.LGBM_BoosterAddValidData(
            self.handle,
wxchan's avatar
wxchan committed
3040
            data.construct().handle))
wxchan's avatar
wxchan committed
3041
3042
3043
3044
3045
        self.valid_sets.append(data)
        self.name_valid_sets.append(name)
        self.__num_dataset += 1
        self.__inner_predict_buffer.append(None)
        self.__is_predicted_cur_iter.append(False)
Nikita Titov's avatar
Nikita Titov committed
3046
        return self
wxchan's avatar
wxchan committed
3047

3048
    def reset_parameter(self, params: Dict[str, Any]) -> "Booster":
3049
        """Reset parameters of Booster.
wxchan's avatar
wxchan committed
3050
3051
3052
3053

        Parameters
        ----------
        params : dict
3054
            New parameters for Booster.
Nikita Titov's avatar
Nikita Titov committed
3055
3056
3057
3058
3059

        Returns
        -------
        self : Booster
            Booster with new parameters.
wxchan's avatar
wxchan committed
3060
3061
3062
3063
3064
3065
        """
        params_str = param_dict_to_str(params)
        if params_str:
            _safe_call(_LIB.LGBM_BoosterResetParameter(
                self.handle,
                c_str(params_str)))
Guolin Ke's avatar
Guolin Ke committed
3066
        self.params.update(params)
Nikita Titov's avatar
Nikita Titov committed
3067
        return self
wxchan's avatar
wxchan committed
3068

3069
3070
3071
3072
3073
    def update(
        self,
        train_set: Optional[Dataset] = None,
        fobj: Optional[_LGBM_CustomObjectiveFunction] = None
    ) -> bool:
Nikita Titov's avatar
Nikita Titov committed
3074
        """Update Booster for one iteration.
3075

wxchan's avatar
wxchan committed
3076
3077
        Parameters
        ----------
3078
3079
3080
3081
        train_set : Dataset or None, optional (default=None)
            Training data.
            If None, last training data is used.
        fobj : callable or None, optional (default=None)
wxchan's avatar
wxchan committed
3082
            Customized objective function.
3083
3084
3085
            Should accept two parameters: preds, train_data,
            and return (grad, hess).

3086
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
3087
                    The predicted values.
3088
3089
                    Predicted values are returned before any transformation,
                    e.g. they are raw margin instead of probability of positive class for binary task.
3090
3091
                train_data : Dataset
                    The training dataset.
3092
                grad : numpy 1-D array or numpy 2-D array (for multi-class task)
3093
3094
                    The value of the first order derivative (gradient) of the loss
                    with respect to the elements of preds for each sample point.
3095
                hess : numpy 1-D array or numpy 2-D array (for multi-class task)
3096
3097
                    The value of the second order derivative (Hessian) of the loss
                    with respect to the elements of preds for each sample point.
wxchan's avatar
wxchan committed
3098

3099
            For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes],
3100
            and grad and hess should be returned in the same format.
3101

wxchan's avatar
wxchan committed
3102
3103
        Returns
        -------
3104
3105
        is_finished : bool
            Whether the update was successfully finished.
wxchan's avatar
wxchan committed
3106
        """
3107
        # need reset training data
3108
3109
3110
3111
3112
3113
        if train_set is None and self.train_set_version != self.train_set.version:
            train_set = self.train_set
            is_the_same_train_set = False
        else:
            is_the_same_train_set = train_set is self.train_set and self.train_set_version == train_set.version
        if train_set is not None and not is_the_same_train_set:
Guolin Ke's avatar
Guolin Ke committed
3114
            if not isinstance(train_set, Dataset):
3115
                raise TypeError(f'Training data should be Dataset instance, met {type(train_set).__name__}')
Guolin Ke's avatar
Guolin Ke committed
3116
            if train_set._predictor is not self.__init_predictor:
3117
3118
                raise LightGBMError("Replace training data failed, "
                                    "you should use same predictor for these data")
wxchan's avatar
wxchan committed
3119
3120
3121
            self.train_set = train_set
            _safe_call(_LIB.LGBM_BoosterResetTrainingData(
                self.handle,
wxchan's avatar
wxchan committed
3122
                self.train_set.construct().handle))
wxchan's avatar
wxchan committed
3123
            self.__inner_predict_buffer[0] = None
3124
            self.train_set_version = self.train_set.version
wxchan's avatar
wxchan committed
3125
3126
        is_finished = ctypes.c_int(0)
        if fobj is None:
3127
            if self.__set_objective_to_none:
3128
                raise LightGBMError('Cannot update due to null objective function.')
wxchan's avatar
wxchan committed
3129
3130
3131
            _safe_call(_LIB.LGBM_BoosterUpdateOneIter(
                self.handle,
                ctypes.byref(is_finished)))
3132
            self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
wxchan's avatar
wxchan committed
3133
3134
            return is_finished.value == 1
        else:
3135
            if not self.__set_objective_to_none:
Nikita Titov's avatar
Nikita Titov committed
3136
                self.reset_parameter({"objective": "none"}).__set_objective_to_none = True
wxchan's avatar
wxchan committed
3137
3138
3139
            grad, hess = fobj(self.__inner_predict(0), self.train_set)
            return self.__boost(grad, hess)

3140
3141
3142
3143
3144
    def __boost(
        self,
        grad: np.ndarray,
        hess: np.ndarray
    ) -> bool:
3145
        """Boost Booster for one iteration with customized gradient statistics.
Nikita Titov's avatar
Nikita Titov committed
3146

Nikita Titov's avatar
Nikita Titov committed
3147
3148
        .. note::

3149
3150
            Score is returned before any transformation,
            e.g. it is raw margin instead of probability of positive class for binary task.
3151
            For multi-class task, score are numpy 2-D array of shape = [n_samples, n_classes],
3152
            and grad and hess should be returned in the same format.
3153

wxchan's avatar
wxchan committed
3154
3155
        Parameters
        ----------
3156
        grad : numpy 1-D array or numpy 2-D array (for multi-class task)
3157
3158
            The value of the first order derivative (gradient) of the loss
            with respect to the elements of score for each sample point.
3159
        hess : numpy 1-D array or numpy 2-D array (for multi-class task)
3160
3161
            The value of the second order derivative (Hessian) of the loss
            with respect to the elements of score for each sample point.
wxchan's avatar
wxchan committed
3162
3163
3164

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
3165
3166
        is_finished : bool
            Whether the boost was successfully finished.
wxchan's avatar
wxchan committed
3167
        """
3168
3169
3170
        if self.__num_class > 1:
            grad = grad.ravel(order='F')
            hess = hess.ravel(order='F')
3171
3172
        grad = list_to_1d_numpy(grad, name='gradient')
        hess = list_to_1d_numpy(hess, name='hessian')
3173
3174
        assert grad.flags.c_contiguous
        assert hess.flags.c_contiguous
wxchan's avatar
wxchan committed
3175
        if len(grad) != len(hess):
3176
3177
            raise ValueError(f"Lengths of gradient ({len(grad)}) and Hessian ({len(hess)}) don't match")
        num_train_data = self.train_set.num_data()
3178
        if len(grad) != num_train_data * self.__num_class:
3179
3180
3181
            raise ValueError(
                f"Lengths of gradient ({len(grad)}) and Hessian ({len(hess)}) "
                f"don't match training data length ({num_train_data}) * "
3182
                f"number of models per one iteration ({self.__num_class})"
3183
            )
wxchan's avatar
wxchan committed
3184
3185
3186
3187
3188
3189
        is_finished = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterUpdateOneIterCustom(
            self.handle,
            grad.ctypes.data_as(ctypes.POINTER(ctypes.c_float)),
            hess.ctypes.data_as(ctypes.POINTER(ctypes.c_float)),
            ctypes.byref(is_finished)))
3190
        self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
wxchan's avatar
wxchan committed
3191
3192
        return is_finished.value == 1

3193
    def rollback_one_iter(self) -> "Booster":
Nikita Titov's avatar
Nikita Titov committed
3194
3195
3196
3197
3198
3199
3200
        """Rollback one iteration.

        Returns
        -------
        self : Booster
            Booster with rolled back one iteration.
        """
wxchan's avatar
wxchan committed
3201
3202
        _safe_call(_LIB.LGBM_BoosterRollbackOneIter(
            self.handle))
3203
        self.__is_predicted_cur_iter = [False for _ in range(self.__num_dataset)]
Nikita Titov's avatar
Nikita Titov committed
3204
        return self
wxchan's avatar
wxchan committed
3205

3206
    def current_iteration(self) -> int:
3207
3208
3209
3210
3211
3212
3213
        """Get the index of the current iteration.

        Returns
        -------
        cur_iter : int
            The index of the current iteration.
        """
Guolin Ke's avatar
Guolin Ke committed
3214
        out_cur_iter = ctypes.c_int(0)
wxchan's avatar
wxchan committed
3215
3216
3217
3218
3219
        _safe_call(_LIB.LGBM_BoosterGetCurrentIteration(
            self.handle,
            ctypes.byref(out_cur_iter)))
        return out_cur_iter.value

3220
    def num_model_per_iteration(self) -> int:
3221
3222
3223
3224
3225
3226
3227
3228
3229
3230
3231
3232
3233
        """Get number of models per iteration.

        Returns
        -------
        model_per_iter : int
            The number of models per iteration.
        """
        model_per_iter = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterNumModelPerIteration(
            self.handle,
            ctypes.byref(model_per_iter)))
        return model_per_iter.value

3234
    def num_trees(self) -> int:
3235
3236
3237
3238
3239
3240
3241
3242
3243
3244
3245
3246
3247
        """Get number of weak sub-models.

        Returns
        -------
        num_trees : int
            The number of weak sub-models.
        """
        num_trees = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterNumberOfTotalModel(
            self.handle,
            ctypes.byref(num_trees)))
        return num_trees.value

3248
    def upper_bound(self) -> float:
3249
3250
3251
3252
        """Get upper bound value of a model.

        Returns
        -------
3253
        upper_bound : float
3254
3255
3256
3257
3258
3259
3260
3261
            Upper bound value of the model.
        """
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetUpperBoundValue(
            self.handle,
            ctypes.byref(ret)))
        return ret.value

3262
    def lower_bound(self) -> float:
3263
3264
3265
3266
        """Get lower bound value of a model.

        Returns
        -------
3267
        lower_bound : float
3268
3269
3270
3271
3272
3273
3274
3275
            Lower bound value of the model.
        """
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetLowerBoundValue(
            self.handle,
            ctypes.byref(ret)))
        return ret.value

wxchan's avatar
wxchan committed
3276
    def eval(self, data, name, feval=None):
3277
        """Evaluate for data.
wxchan's avatar
wxchan committed
3278
3279
3280

        Parameters
        ----------
3281
3282
        data : Dataset
            Data for the evaluating.
3283
        name : str
3284
            Name of the data.
3285
        feval : callable, list of callable, or None, optional (default=None)
3286
            Customized evaluation function.
3287
            Each evaluation function should accept two parameters: preds, eval_data,
3288
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
3289

3290
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
3291
                    The predicted values.
3292
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
3293
                    If custom objective function is used, predicted values are returned before any transformation,
3294
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
3295
                eval_data : Dataset
3296
                    A ``Dataset`` to evaluate.
3297
                eval_name : str
Andrew Ziem's avatar
Andrew Ziem committed
3298
                    The name of evaluation function (without whitespace).
3299
3300
3301
3302
3303
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

wxchan's avatar
wxchan committed
3304
3305
        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
3306
        result : list
3307
            List with evaluation results.
wxchan's avatar
wxchan committed
3308
        """
Guolin Ke's avatar
Guolin Ke committed
3309
3310
        if not isinstance(data, Dataset):
            raise TypeError("Can only eval for Dataset instance")
wxchan's avatar
wxchan committed
3311
3312
3313
3314
        data_idx = -1
        if data is self.train_set:
            data_idx = 0
        else:
3315
            for i in range(len(self.valid_sets)):
wxchan's avatar
wxchan committed
3316
3317
3318
                if data is self.valid_sets[i]:
                    data_idx = i + 1
                    break
3319
        # need to push new valid data
wxchan's avatar
wxchan committed
3320
3321
3322
3323
3324
3325
3326
        if data_idx == -1:
            self.add_valid(data, name)
            data_idx = self.__num_dataset - 1

        return self.__inner_eval(name, data_idx, feval)

    def eval_train(self, feval=None):
3327
        """Evaluate for training data.
wxchan's avatar
wxchan committed
3328
3329
3330

        Parameters
        ----------
3331
        feval : callable, list of callable, or None, optional (default=None)
3332
            Customized evaluation function.
3333
            Each evaluation function should accept two parameters: preds, eval_data,
3334
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
3335

3336
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
3337
                    The predicted values.
3338
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
3339
                    If custom objective function is used, predicted values are returned before any transformation,
3340
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
Akshita Dixit's avatar
Akshita Dixit committed
3341
                eval_data : Dataset
3342
                    The training dataset.
3343
                eval_name : str
Andrew Ziem's avatar
Andrew Ziem committed
3344
                    The name of evaluation function (without whitespace).
3345
3346
3347
3348
3349
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

wxchan's avatar
wxchan committed
3350
3351
        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
3352
        result : list
3353
            List with evaluation results.
wxchan's avatar
wxchan committed
3354
        """
3355
        return self.__inner_eval(self._train_data_name, 0, feval)
wxchan's avatar
wxchan committed
3356
3357

    def eval_valid(self, feval=None):
3358
        """Evaluate for validation data.
wxchan's avatar
wxchan committed
3359
3360
3361

        Parameters
        ----------
3362
        feval : callable, list of callable, or None, optional (default=None)
3363
            Customized evaluation function.
3364
            Each evaluation function should accept two parameters: preds, eval_data,
3365
            and return (eval_name, eval_result, is_higher_better) or list of such tuples.
3366

3367
                preds : numpy 1-D array or numpy 2-D array (for multi-class task)
3368
                    The predicted values.
3369
                    For multi-class task, preds are numpy 2-D array of shape = [n_samples, n_classes].
3370
                    If custom objective function is used, predicted values are returned before any transformation,
3371
                    e.g. they are raw margin instead of probability of positive class for binary task in this case.
Akshita Dixit's avatar
Akshita Dixit committed
3372
                eval_data : Dataset
3373
                    The validation dataset.
3374
                eval_name : str
Andrew Ziem's avatar
Andrew Ziem committed
3375
                    The name of evaluation function (without whitespace).
3376
3377
3378
3379
3380
                eval_result : float
                    The eval result.
                is_higher_better : bool
                    Is eval result higher better, e.g. AUC is ``is_higher_better``.

wxchan's avatar
wxchan committed
3381
3382
        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
3383
        result : list
3384
            List with evaluation results.
wxchan's avatar
wxchan committed
3385
        """
3386
        return [item for i in range(1, self.__num_dataset)
wxchan's avatar
wxchan committed
3387
                for item in self.__inner_eval(self.name_valid_sets[i - 1], i, feval)]
wxchan's avatar
wxchan committed
3388

3389
3390
3391
3392
3393
3394
3395
    def save_model(
        self,
        filename: Union[str, Path],
        num_iteration: Optional[int] = None,
        start_iteration: int = 0,
        importance_type: str = 'split'
    ) -> "Booster":
3396
        """Save Booster to file.
wxchan's avatar
wxchan committed
3397
3398
3399

        Parameters
        ----------
3400
        filename : str or pathlib.Path
3401
            Filename to save Booster.
3402
3403
3404
3405
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be saved.
            If None, if the best iteration exists, it is saved; otherwise, all iterations are saved.
            If <= 0, all iterations are saved.
Nikita Titov's avatar
Nikita Titov committed
3406
        start_iteration : int, optional (default=0)
3407
            Start index of the iteration that should be saved.
3408
        importance_type : str, optional (default="split")
3409
3410
3411
            What type of feature importance should be saved.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
Nikita Titov's avatar
Nikita Titov committed
3412
3413
3414
3415
3416

        Returns
        -------
        self : Booster
            Returns self.
wxchan's avatar
wxchan committed
3417
        """
3418
        if num_iteration is None:
3419
            num_iteration = self.best_iteration
3420
        importance_type_int = FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
wxchan's avatar
wxchan committed
3421
3422
        _safe_call(_LIB.LGBM_BoosterSaveModel(
            self.handle,
3423
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
3424
            ctypes.c_int(num_iteration),
3425
            ctypes.c_int(importance_type_int),
3426
            c_str(str(filename))))
3427
        _dump_pandas_categorical(self.pandas_categorical, filename)
Nikita Titov's avatar
Nikita Titov committed
3428
        return self
wxchan's avatar
wxchan committed
3429

3430
3431
3432
3433
3434
    def shuffle_models(
        self,
        start_iteration: int = 0,
        end_iteration: int = -1
    ) -> "Booster":
3435
        """Shuffle models.
Nikita Titov's avatar
Nikita Titov committed
3436

3437
3438
3439
        Parameters
        ----------
        start_iteration : int, optional (default=0)
3440
            The first iteration that will be shuffled.
3441
3442
        end_iteration : int, optional (default=-1)
            The last iteration that will be shuffled.
3443
            If <= 0, means the last available iteration.
3444

Nikita Titov's avatar
Nikita Titov committed
3445
3446
3447
3448
        Returns
        -------
        self : Booster
            Booster with shuffled models.
3449
        """
3450
3451
        _safe_call(_LIB.LGBM_BoosterShuffleModels(
            self.handle,
Guolin Ke's avatar
Guolin Ke committed
3452
3453
            ctypes.c_int(start_iteration),
            ctypes.c_int(end_iteration)))
Nikita Titov's avatar
Nikita Titov committed
3454
        return self
3455

3456
    def model_from_string(self, model_str: str) -> "Booster":
3457
3458
3459
3460
        """Load Booster from a string.

        Parameters
        ----------
3461
        model_str : str
3462
3463
3464
3465
            Model will be loaded from this string.

        Returns
        -------
Nikita Titov's avatar
Nikita Titov committed
3466
        self : Booster
3467
3468
            Loaded Booster object.
        """
3469
3470
3471
3472
        if self.handle is not None:
            _safe_call(_LIB.LGBM_BoosterFree(self.handle))
        self._free_buffer()
        self.handle = ctypes.c_void_p()
3473
3474
3475
3476
3477
3478
3479
3480
3481
3482
        out_num_iterations = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterLoadModelFromString(
            c_str(model_str),
            ctypes.byref(out_num_iterations),
            ctypes.byref(self.handle)))
        out_num_class = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetNumClasses(
            self.handle,
            ctypes.byref(out_num_class)))
        self.__num_class = out_num_class.value
3483
        self.pandas_categorical = _load_pandas_categorical(model_str=model_str)
3484
3485
        return self

3486
3487
3488
3489
3490
3491
    def model_to_string(
        self,
        num_iteration: Optional[int] = None,
        start_iteration: int = 0,
        importance_type: str = 'split'
    ) -> str:
3492
        """Save Booster to string.
3493

3494
3495
3496
3497
3498
3499
        Parameters
        ----------
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be saved.
            If None, if the best iteration exists, it is saved; otherwise, all iterations are saved.
            If <= 0, all iterations are saved.
Nikita Titov's avatar
Nikita Titov committed
3500
        start_iteration : int, optional (default=0)
3501
            Start index of the iteration that should be saved.
3502
        importance_type : str, optional (default="split")
3503
3504
3505
            What type of feature importance should be saved.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
3506
3507
3508

        Returns
        -------
3509
        str_repr : str
3510
3511
            String representation of Booster.
        """
3512
        if num_iteration is None:
3513
            num_iteration = self.best_iteration
3514
        importance_type_int = FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
3515
        buffer_len = 1 << 20
3516
        tmp_out_len = ctypes.c_int64(0)
3517
3518
3519
3520
        string_buffer = ctypes.create_string_buffer(buffer_len)
        ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
        _safe_call(_LIB.LGBM_BoosterSaveModelToString(
            self.handle,
3521
            ctypes.c_int(start_iteration),
3522
            ctypes.c_int(num_iteration),
3523
            ctypes.c_int(importance_type_int),
3524
            ctypes.c_int64(buffer_len),
3525
3526
3527
            ctypes.byref(tmp_out_len),
            ptr_string_buffer))
        actual_len = tmp_out_len.value
3528
        # if buffer length is not long enough, re-allocate a buffer
3529
3530
3531
3532
3533
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
            ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
            _safe_call(_LIB.LGBM_BoosterSaveModelToString(
                self.handle,
3534
                ctypes.c_int(start_iteration),
3535
                ctypes.c_int(num_iteration),
3536
                ctypes.c_int(importance_type_int),
3537
                ctypes.c_int64(actual_len),
3538
3539
                ctypes.byref(tmp_out_len),
                ptr_string_buffer))
3540
        ret = string_buffer.value.decode('utf-8')
3541
3542
        ret += _dump_pandas_categorical(self.pandas_categorical)
        return ret
3543

3544
3545
3546
3547
3548
3549
3550
    def dump_model(
        self,
        num_iteration: Optional[int] = None,
        start_iteration: int = 0,
        importance_type: str = 'split',
        object_hook: Optional[Callable[[Dict[str, Any]], Dict[str, Any]]] = None
    ) -> Dict[str, Any]:
Nikita Titov's avatar
Nikita Titov committed
3551
        """Dump Booster to JSON format.
wxchan's avatar
wxchan committed
3552

3553
3554
        Parameters
        ----------
3555
3556
3557
3558
        num_iteration : int or None, optional (default=None)
            Index of the iteration that should be dumped.
            If None, if the best iteration exists, it is dumped; otherwise, all iterations are dumped.
            If <= 0, all iterations are dumped.
Nikita Titov's avatar
Nikita Titov committed
3559
        start_iteration : int, optional (default=0)
3560
            Start index of the iteration that should be dumped.
3561
        importance_type : str, optional (default="split")
3562
3563
3564
            What type of feature importance should be dumped.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
3565
3566
3567
3568
3569
3570
3571
3572
3573
        object_hook : callable or None, optional (default=None)
            If not None, ``object_hook`` is a function called while parsing the json
            string returned by the C API. It may be used to alter the json, to store
            specific values while building the json structure. It avoids
            walking through the structure again. It saves a significant amount
            of time if the number of trees is huge.
            Signature is ``def object_hook(node: dict) -> dict``.
            None is equivalent to ``lambda node: node``.
            See documentation of ``json.loads()`` for further details.
3574

wxchan's avatar
wxchan committed
3575
3576
        Returns
        -------
3577
        json_repr : dict
Nikita Titov's avatar
Nikita Titov committed
3578
            JSON format of Booster.
wxchan's avatar
wxchan committed
3579
        """
3580
        if num_iteration is None:
3581
            num_iteration = self.best_iteration
3582
        importance_type_int = FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
wxchan's avatar
wxchan committed
3583
        buffer_len = 1 << 20
3584
        tmp_out_len = ctypes.c_int64(0)
wxchan's avatar
wxchan committed
3585
3586
3587
3588
        string_buffer = ctypes.create_string_buffer(buffer_len)
        ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
        _safe_call(_LIB.LGBM_BoosterDumpModel(
            self.handle,
3589
            ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
3590
            ctypes.c_int(num_iteration),
3591
            ctypes.c_int(importance_type_int),
3592
            ctypes.c_int64(buffer_len),
wxchan's avatar
wxchan committed
3593
            ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
3594
            ptr_string_buffer))
wxchan's avatar
wxchan committed
3595
        actual_len = tmp_out_len.value
3596
        # if buffer length is not long enough, reallocate a buffer
wxchan's avatar
wxchan committed
3597
3598
3599
3600
3601
        if actual_len > buffer_len:
            string_buffer = ctypes.create_string_buffer(actual_len)
            ptr_string_buffer = ctypes.c_char_p(*[ctypes.addressof(string_buffer)])
            _safe_call(_LIB.LGBM_BoosterDumpModel(
                self.handle,
3602
                ctypes.c_int(start_iteration),
Guolin Ke's avatar
Guolin Ke committed
3603
                ctypes.c_int(num_iteration),
3604
                ctypes.c_int(importance_type_int),
3605
                ctypes.c_int64(actual_len),
wxchan's avatar
wxchan committed
3606
                ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
3607
                ptr_string_buffer))
3608
        ret = json.loads(string_buffer.value.decode('utf-8'), object_hook=object_hook)
3609
3610
3611
        ret['pandas_categorical'] = json.loads(json.dumps(self.pandas_categorical,
                                                          default=json_default_with_numpy))
        return ret
wxchan's avatar
wxchan committed
3612

3613
3614
3615
3616
3617
3618
3619
3620
3621
3622
3623
3624
    def predict(
        self,
        data,
        start_iteration: int = 0,
        num_iteration: Optional[int] = None,
        raw_score: bool = False,
        pred_leaf: bool = False,
        pred_contrib: bool = False,
        data_has_header: bool = False,
        validate_features: bool = False,
        **kwargs: Any
    ):
3625
        """Make a prediction.
wxchan's avatar
wxchan committed
3626
3627
3628

        Parameters
        ----------
3629
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
3630
            Data source for prediction.
3631
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
3632
        start_iteration : int, optional (default=0)
3633
            Start index of the iteration to predict.
3634
            If <= 0, starts from the first iteration.
3635
        num_iteration : int or None, optional (default=None)
3636
3637
3638
3639
            Total number of iterations used in the prediction.
            If None, if the best iteration exists and start_iteration <= 0, the best iteration is used;
            otherwise, all iterations from ``start_iteration`` are used (no limits).
            If <= 0, all iterations from ``start_iteration`` are used (no limits).
3640
3641
3642
3643
        raw_score : bool, optional (default=False)
            Whether to predict raw scores.
        pred_leaf : bool, optional (default=False)
            Whether to predict leaf index.
3644
3645
        pred_contrib : bool, optional (default=False)
            Whether to predict feature contributions.
3646

Nikita Titov's avatar
Nikita Titov committed
3647
3648
3649
3650
3651
3652
3653
            .. note::

                If you want to get more explanations for your model's predictions using SHAP values,
                like SHAP interaction values,
                you can install the shap package (https://github.com/slundberg/shap).
                Note that unlike the shap package, with ``pred_contrib`` we return a matrix with an extra
                column, where the last column is the expected value.
3654

3655
3656
        data_has_header : bool, optional (default=False)
            Whether the data has header.
3657
            Used only if data is str.
3658
3659
3660
        validate_features : bool, optional (default=False)
            If True, ensure that the features used to predict match the ones used to train.
            Used only if data is pandas DataFrame.
3661
3662
        **kwargs
            Other parameters for the prediction.
wxchan's avatar
wxchan committed
3663
3664
3665

        Returns
        -------
3666
        result : numpy array, scipy.sparse or list of scipy.sparse
3667
            Prediction result.
3668
            Can be sparse or a list of sparse objects (each element represents predictions for one class) for feature contributions (when ``pred_contrib=True``).
wxchan's avatar
wxchan committed
3669
        """
3670
        predictor = self._to_predictor(deepcopy(kwargs))
3671
        if num_iteration is None:
3672
            if start_iteration <= 0:
3673
3674
3675
3676
                num_iteration = self.best_iteration
            else:
                num_iteration = -1
        return predictor.predict(data, start_iteration, num_iteration,
3677
                                 raw_score, pred_leaf, pred_contrib,
3678
                                 data_has_header, validate_features)
wxchan's avatar
wxchan committed
3679

3680
3681
3682
3683
    def refit(
        self,
        data,
        label,
3684
3685
        decay_rate: float = 0.9,
        reference: Optional[Dataset] = None,
3686
3687
3688
        weight=None,
        group=None,
        init_score=None,
3689
3690
3691
3692
3693
        feature_name: Union[str, List[str]] = 'auto',
        categorical_feature: Union[str, List[str], List[int]] = 'auto',
        dataset_params: Optional[Dict[str, Any]] = None,
        free_raw_data: bool = True,
        validate_features: bool = False,
3694
3695
        **kwargs
    ):
Guolin Ke's avatar
Guolin Ke committed
3696
3697
3698
3699
        """Refit the existing Booster by new data.

        Parameters
        ----------
3700
        data : str, pathlib.Path, numpy array, pandas DataFrame, H2O DataTable's Frame or scipy.sparse
Guolin Ke's avatar
Guolin Ke committed
3701
            Data source for refit.
3702
            If str or pathlib.Path, it represents the path to a text file (CSV, TSV, or LibSVM).
3703
        label : list, numpy 1-D array or pandas Series / one-column DataFrame
Guolin Ke's avatar
Guolin Ke committed
3704
3705
            Label for refit.
        decay_rate : float, optional (default=0.9)
3706
3707
            Decay rate of refit,
            will use ``leaf_output = decay_rate * old_leaf_output + (1.0 - decay_rate) * new_leaf_output`` to refit trees.
3708
3709
3710
        reference : Dataset or None, optional (default=None)
            Reference for ``data``.
        weight : list, numpy 1-D array, pandas Series or None, optional (default=None)
3711
            Weight for each ``data`` instance. Weights should be non-negative.
3712
3713
3714
3715
3716
3717
3718
3719
3720
3721
3722
3723
3724
3725
3726
3727
        group : list, numpy 1-D array, pandas Series or None, optional (default=None)
            Group/query size for ``data``.
            Only used in the learning-to-rank task.
            sum(group) = n_samples.
            For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
            where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
        init_score : list, list of lists (for multi-class task), numpy array, pandas Series, pandas DataFrame (for multi-class task), or None, optional (default=None)
            Init score for ``data``.
        feature_name : list of str, or 'auto', optional (default="auto")
            Feature names for ``data``.
            If 'auto' and data is pandas DataFrame, data columns names are used.
        categorical_feature : list of str or int, or 'auto', optional (default="auto")
            Categorical features for ``data``.
            If list of int, interpreted as indices.
            If list of str, interpreted as feature names (need to specify ``feature_name`` as well).
            If 'auto' and data is pandas DataFrame, pandas unordered categorical columns are used.
3728
            All values in categorical features will be cast to int32 and thus should be less than int32 max value (2147483647).
3729
3730
3731
            Large values could be memory consuming. Consider using consecutive integers starting from zero.
            All negative values in categorical features will be treated as missing values.
            The output cannot be monotonically constrained with respect to a categorical feature.
3732
            Floating point numbers in categorical features will be rounded towards 0.
3733
3734
3735
3736
        dataset_params : dict or None, optional (default=None)
            Other parameters for Dataset ``data``.
        free_raw_data : bool, optional (default=True)
            If True, raw data is freed after constructing inner Dataset for ``data``.
3737
3738
3739
        validate_features : bool, optional (default=False)
            If True, ensure that the features used to refit the model match the original ones.
            Used only if data is pandas DataFrame.
3740
3741
        **kwargs
            Other parameters for refit.
3742
            These parameters will be passed to ``predict`` method.
Guolin Ke's avatar
Guolin Ke committed
3743
3744
3745
3746
3747
3748

        Returns
        -------
        result : Booster
            Refitted Booster.
        """
3749
3750
        if self.__set_objective_to_none:
            raise LightGBMError('Cannot refit due to null objective function.')
3751
3752
        if dataset_params is None:
            dataset_params = {}
3753
        predictor = self._to_predictor(deepcopy(kwargs))
3754
        leaf_preds = predictor.predict(data, -1, pred_leaf=True, validate_features=validate_features)
3755
        nrow, ncol = leaf_preds.shape
3756
        out_is_linear = ctypes.c_int(0)
3757
3758
3759
        _safe_call(_LIB.LGBM_BoosterGetLinear(
            self.handle,
            ctypes.byref(out_is_linear)))
Nikita Titov's avatar
Nikita Titov committed
3760
3761
3762
3763
3764
        new_params = _choose_param_value(
            main_param_name="linear_tree",
            params=self.params,
            default_value=None
        )
3765
        new_params["linear_tree"] = bool(out_is_linear.value)
3766
3767
3768
3769
3770
3771
3772
3773
3774
3775
3776
3777
3778
        new_params.update(dataset_params)
        train_set = Dataset(
            data=data,
            label=label,
            reference=reference,
            weight=weight,
            group=group,
            init_score=init_score,
            feature_name=feature_name,
            categorical_feature=categorical_feature,
            params=new_params,
            free_raw_data=free_raw_data,
        )
3779
        new_params['refit_decay_rate'] = decay_rate
3780
        new_booster = Booster(new_params, train_set)
Guolin Ke's avatar
Guolin Ke committed
3781
3782
3783
3784
3785
        # Copy models
        _safe_call(_LIB.LGBM_BoosterMerge(
            new_booster.handle,
            predictor.handle))
        leaf_preds = leaf_preds.reshape(-1)
3786
        ptr_data, _, _ = c_int_array(leaf_preds)
Guolin Ke's avatar
Guolin Ke committed
3787
3788
3789
        _safe_call(_LIB.LGBM_BoosterRefit(
            new_booster.handle,
            ptr_data,
3790
3791
            ctypes.c_int32(nrow),
            ctypes.c_int32(ncol)))
3792
        new_booster.network = self.network
Guolin Ke's avatar
Guolin Ke committed
3793
3794
        return new_booster

3795
    def get_leaf_output(self, tree_id: int, leaf_id: int) -> float:
3796
3797
3798
3799
3800
3801
3802
3803
3804
3805
3806
3807
3808
3809
        """Get the output of a leaf.

        Parameters
        ----------
        tree_id : int
            The index of the tree.
        leaf_id : int
            The index of the leaf in the tree.

        Returns
        -------
        result : float
            The output of the leaf.
        """
3810
3811
3812
3813
3814
3815
3816
3817
        ret = ctypes.c_double(0)
        _safe_call(_LIB.LGBM_BoosterGetLeafValue(
            self.handle,
            ctypes.c_int(tree_id),
            ctypes.c_int(leaf_id),
            ctypes.byref(ret)))
        return ret.value

3818
3819
3820
3821
    def _to_predictor(
        self,
        pred_parameter: Optional[Dict[str, Any]] = None
    ) -> _InnerPredictor:
3822
        """Convert to predictor."""
3823
        predictor = _InnerPredictor(booster_handle=self.handle, pred_parameter=pred_parameter)
3824
        predictor.pandas_categorical = self.pandas_categorical
wxchan's avatar
wxchan committed
3825
3826
        return predictor

3827
    def num_feature(self) -> int:
3828
3829
3830
3831
3832
3833
3834
        """Get number of features.

        Returns
        -------
        num_feature : int
            The number of features.
        """
3835
3836
3837
3838
3839
3840
        out_num_feature = ctypes.c_int(0)
        _safe_call(_LIB.LGBM_BoosterGetNumFeature(
            self.handle,
            ctypes.byref(out_num_feature)))
        return out_num_feature.value

3841
    def feature_name(self) -> List[str]:
3842
        """Get names of features.
wxchan's avatar
wxchan committed
3843
3844
3845

        Returns
        -------
3846
        result : list of str
3847
            List with names of features.
wxchan's avatar
wxchan committed
3848
        """
3849
        num_feature = self.num_feature()
3850
        # Get name of features
wxchan's avatar
wxchan committed
3851
        tmp_out_len = ctypes.c_int(0)
3852
3853
        reserved_string_buffer_size = 255
        required_string_buffer_size = ctypes.c_size_t(0)
3854
        string_buffers = [ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(num_feature)]
wxchan's avatar
wxchan committed
3855
3856
3857
        ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
        _safe_call(_LIB.LGBM_BoosterGetFeatureNames(
            self.handle,
3858
            ctypes.c_int(num_feature),
wxchan's avatar
wxchan committed
3859
            ctypes.byref(tmp_out_len),
3860
            ctypes.c_size_t(reserved_string_buffer_size),
3861
            ctypes.byref(required_string_buffer_size),
wxchan's avatar
wxchan committed
3862
3863
3864
            ptr_string_buffers))
        if num_feature != tmp_out_len.value:
            raise ValueError("Length of feature names doesn't equal with num_feature")
3865
3866
3867
3868
3869
3870
3871
3872
3873
3874
3875
3876
        actual_string_buffer_size = required_string_buffer_size.value
        # if buffer length is not long enough, reallocate buffers
        if reserved_string_buffer_size < actual_string_buffer_size:
            string_buffers = [ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(num_feature)]
            ptr_string_buffers = (ctypes.c_char_p * num_feature)(*map(ctypes.addressof, string_buffers))
            _safe_call(_LIB.LGBM_BoosterGetFeatureNames(
                self.handle,
                ctypes.c_int(num_feature),
                ctypes.byref(tmp_out_len),
                ctypes.c_size_t(actual_string_buffer_size),
                ctypes.byref(required_string_buffer_size),
                ptr_string_buffers))
3877
        return [string_buffers[i].value.decode('utf-8') for i in range(num_feature)]
wxchan's avatar
wxchan committed
3878

3879
3880
3881
3882
3883
    def feature_importance(
        self,
        importance_type: str = 'split',
        iteration: Optional[int] = None
    ) -> np.ndarray:
3884
        """Get feature importances.
3885

3886
3887
        Parameters
        ----------
3888
        importance_type : str, optional (default="split")
3889
3890
3891
            How the importance is calculated.
            If "split", result contains numbers of times the feature is used in a model.
            If "gain", result contains total gains of splits which use the feature.
3892
3893
3894
3895
        iteration : int or None, optional (default=None)
            Limit number of iterations in the feature importance calculation.
            If None, if the best iteration exists, it is used; otherwise, all trees are used.
            If <= 0, all trees are used (no limits).
3896

3897
3898
        Returns
        -------
3899
3900
        result : numpy array
            Array with feature importances.
3901
        """
3902
3903
        if iteration is None:
            iteration = self.best_iteration
3904
        importance_type_int = FEATURE_IMPORTANCE_TYPE_MAPPER[importance_type]
3905
        result = np.empty(self.num_feature(), dtype=np.float64)
3906
3907
3908
3909
3910
        _safe_call(_LIB.LGBM_BoosterFeatureImportance(
            self.handle,
            ctypes.c_int(iteration),
            ctypes.c_int(importance_type_int),
            result.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
3911
        if importance_type_int == C_API_FEATURE_IMPORTANCE_SPLIT:
3912
            return result.astype(np.int32)
3913
3914
        else:
            return result
3915

3916
3917
3918
3919
3920
3921
    def get_split_value_histogram(
        self,
        feature: Union[int, str],
        bins: Optional[Union[int, str]] = None,
        xgboost_style: bool = False
    ) -> Union[Tuple[np.ndarray, np.ndarray], np.ndarray, pd_DataFrame]:
3922
3923
3924
3925
        """Get split value histogram for the specified feature.

        Parameters
        ----------
3926
        feature : int or str
3927
3928
            The feature name or index the histogram is calculated for.
            If int, interpreted as index.
3929
            If str, interpreted as name.
3930

Nikita Titov's avatar
Nikita Titov committed
3931
3932
3933
            .. warning::

                Categorical features are not supported.
3934

3935
        bins : int, str or None, optional (default=None)
3936
3937
3938
            The maximum number of bins.
            If None, or int and > number of unique split values and ``xgboost_style=True``,
            the number of bins equals number of unique split values.
3939
            If str, it should be one from the list of the supported values by ``numpy.histogram()`` function.
3940
3941
3942
3943
3944
3945
3946
3947
3948
3949
3950
3951
3952
3953
3954
3955
3956
        xgboost_style : bool, optional (default=False)
            Whether the returned result should be in the same form as it is in XGBoost.
            If False, the returned value is tuple of 2 numpy arrays as it is in ``numpy.histogram()`` function.
            If True, the returned value is matrix, in which the first column is the right edges of non-empty bins
            and the second one is the histogram values.

        Returns
        -------
        result_tuple : tuple of 2 numpy arrays
            If ``xgboost_style=False``, the values of the histogram of used splitting values for the specified feature
            and the bin edges.
        result_array_like : numpy array or pandas DataFrame (if pandas is installed)
            If ``xgboost_style=True``, the histogram of used splitting values for the specified feature.
        """
        def add(root):
            """Recursively add thresholds."""
            if 'split_index' in root:  # non-leaf
3957
                if feature_names is not None and isinstance(feature, str):
3958
3959
3960
3961
                    split_feature = feature_names[root['split_feature']]
                else:
                    split_feature = root['split_feature']
                if split_feature == feature:
3962
                    if isinstance(root['threshold'], str):
3963
3964
3965
                        raise LightGBMError('Cannot compute split value histogram for the categorical feature')
                    else:
                        values.append(root['threshold'])
3966
3967
3968
3969
3970
3971
3972
3973
3974
3975
                add(root['left_child'])
                add(root['right_child'])

        model = self.dump_model()
        feature_names = model.get('feature_names')
        tree_infos = model['tree_info']
        values = []
        for tree_info in tree_infos:
            add(tree_info['tree_structure'])

3976
        if bins is None or isinstance(bins, int) and xgboost_style:
3977
3978
3979
3980
3981
3982
3983
            n_unique = len(np.unique(values))
            bins = max(min(n_unique, bins) if bins is not None else n_unique, 1)
        hist, bin_edges = np.histogram(values, bins=bins)
        if xgboost_style:
            ret = np.column_stack((bin_edges[1:], hist))
            ret = ret[ret[:, 1] > 0]
            if PANDAS_INSTALLED:
3984
                return pd_DataFrame(ret, columns=['SplitValue', 'Count'])
3985
3986
3987
3988
3989
            else:
                return ret
        else:
            return hist, bin_edges

wxchan's avatar
wxchan committed
3990
    def __inner_eval(self, data_name, data_idx, feval=None):
3991
        """Evaluate training or validation data."""
wxchan's avatar
wxchan committed
3992
        if data_idx >= self.__num_dataset:
3993
            raise ValueError("Data_idx should be smaller than number of dataset")
wxchan's avatar
wxchan committed
3994
3995
3996
        self.__get_eval_info()
        ret = []
        if self.__num_inner_eval > 0:
3997
            result = np.empty(self.__num_inner_eval, dtype=np.float64)
Guolin Ke's avatar
Guolin Ke committed
3998
            tmp_out_len = ctypes.c_int(0)
wxchan's avatar
wxchan committed
3999
4000
            _safe_call(_LIB.LGBM_BoosterGetEval(
                self.handle,
Guolin Ke's avatar
Guolin Ke committed
4001
                ctypes.c_int(data_idx),
wxchan's avatar
wxchan committed
4002
                ctypes.byref(tmp_out_len),
Guolin Ke's avatar
Guolin Ke committed
4003
                result.ctypes.data_as(ctypes.POINTER(ctypes.c_double))))
wxchan's avatar
wxchan committed
4004
            if tmp_out_len.value != self.__num_inner_eval:
4005
                raise ValueError("Wrong length of eval results")
4006
            for i in range(self.__num_inner_eval):
4007
4008
                ret.append((data_name, self.__name_inner_eval[i],
                            result[i], self.__higher_better_inner_eval[i]))
4009
4010
        if callable(feval):
            feval = [feval]
wxchan's avatar
wxchan committed
4011
4012
4013
4014
4015
        if feval is not None:
            if data_idx == 0:
                cur_data = self.train_set
            else:
                cur_data = self.valid_sets[data_idx - 1]
4016
4017
4018
4019
4020
4021
4022
4023
4024
            for eval_function in feval:
                if eval_function is None:
                    continue
                feval_ret = eval_function(self.__inner_predict(data_idx), cur_data)
                if isinstance(feval_ret, list):
                    for eval_name, val, is_higher_better in feval_ret:
                        ret.append((data_name, eval_name, val, is_higher_better))
                else:
                    eval_name, val, is_higher_better = feval_ret
wxchan's avatar
wxchan committed
4025
4026
4027
                    ret.append((data_name, eval_name, val, is_higher_better))
        return ret

4028
    def __inner_predict(self, data_idx: int):
4029
        """Predict for training and validation dataset."""
wxchan's avatar
wxchan committed
4030
        if data_idx >= self.__num_dataset:
4031
            raise ValueError("Data_idx should be smaller than number of dataset")
wxchan's avatar
wxchan committed
4032
4033
4034
4035
4036
        if self.__inner_predict_buffer[data_idx] is None:
            if data_idx == 0:
                n_preds = self.train_set.num_data() * self.__num_class
            else:
                n_preds = self.valid_sets[data_idx - 1].num_data() * self.__num_class
4037
            self.__inner_predict_buffer[data_idx] = np.empty(n_preds, dtype=np.float64)
4038
        # avoid to predict many time in one iteration
wxchan's avatar
wxchan committed
4039
4040
        if not self.__is_predicted_cur_iter[data_idx]:
            tmp_out_len = ctypes.c_int64(0)
Guolin Ke's avatar
Guolin Ke committed
4041
            data_ptr = self.__inner_predict_buffer[data_idx].ctypes.data_as(ctypes.POINTER(ctypes.c_double))
wxchan's avatar
wxchan committed
4042
4043
            _safe_call(_LIB.LGBM_BoosterGetPredict(
                self.handle,
Guolin Ke's avatar
Guolin Ke committed
4044
                ctypes.c_int(data_idx),
wxchan's avatar
wxchan committed
4045
4046
4047
                ctypes.byref(tmp_out_len),
                data_ptr))
            if tmp_out_len.value != len(self.__inner_predict_buffer[data_idx]):
4048
                raise ValueError(f"Wrong length of predict results for data {data_idx}")
wxchan's avatar
wxchan committed
4049
            self.__is_predicted_cur_iter[data_idx] = True
4050
4051
4052
4053
4054
        result = self.__inner_predict_buffer[data_idx]
        if self.__num_class > 1:
            num_data = result.size // self.__num_class
            result = result.reshape(num_data, self.__num_class, order='F')
        return result
wxchan's avatar
wxchan committed
4055

4056
    def __get_eval_info(self) -> None:
4057
        """Get inner evaluation count and names."""
wxchan's avatar
wxchan committed
4058
4059
        if self.__need_reload_eval_info:
            self.__need_reload_eval_info = False
Guolin Ke's avatar
Guolin Ke committed
4060
            out_num_eval = ctypes.c_int(0)
4061
            # Get num of inner evals
wxchan's avatar
wxchan committed
4062
4063
4064
4065
4066
            _safe_call(_LIB.LGBM_BoosterGetEvalCounts(
                self.handle,
                ctypes.byref(out_num_eval)))
            self.__num_inner_eval = out_num_eval.value
            if self.__num_inner_eval > 0:
4067
                # Get name of eval metrics
Guolin Ke's avatar
Guolin Ke committed
4068
                tmp_out_len = ctypes.c_int(0)
4069
4070
4071
                reserved_string_buffer_size = 255
                required_string_buffer_size = ctypes.c_size_t(0)
                string_buffers = [
4072
                    ctypes.create_string_buffer(reserved_string_buffer_size) for _ in range(self.__num_inner_eval)
4073
                ]
wxchan's avatar
wxchan committed
4074
                ptr_string_buffers = (ctypes.c_char_p * self.__num_inner_eval)(*map(ctypes.addressof, string_buffers))
wxchan's avatar
wxchan committed
4075
4076
                _safe_call(_LIB.LGBM_BoosterGetEvalNames(
                    self.handle,
4077
                    ctypes.c_int(self.__num_inner_eval),
wxchan's avatar
wxchan committed
4078
                    ctypes.byref(tmp_out_len),
4079
                    ctypes.c_size_t(reserved_string_buffer_size),
4080
                    ctypes.byref(required_string_buffer_size),
wxchan's avatar
wxchan committed
4081
4082
                    ptr_string_buffers))
                if self.__num_inner_eval != tmp_out_len.value:
4083
                    raise ValueError("Length of eval names doesn't equal with num_evals")
4084
4085
4086
4087
4088
4089
4090
4091
4092
4093
4094
4095
4096
4097
4098
4099
4100
4101
4102
4103
                actual_string_buffer_size = required_string_buffer_size.value
                # if buffer length is not long enough, reallocate buffers
                if reserved_string_buffer_size < actual_string_buffer_size:
                    string_buffers = [
                        ctypes.create_string_buffer(actual_string_buffer_size) for _ in range(self.__num_inner_eval)
                    ]
                    ptr_string_buffers = (ctypes.c_char_p * self.__num_inner_eval)(*map(ctypes.addressof, string_buffers))
                    _safe_call(_LIB.LGBM_BoosterGetEvalNames(
                        self.handle,
                        ctypes.c_int(self.__num_inner_eval),
                        ctypes.byref(tmp_out_len),
                        ctypes.c_size_t(actual_string_buffer_size),
                        ctypes.byref(required_string_buffer_size),
                        ptr_string_buffers))
                self.__name_inner_eval = [
                    string_buffers[i].value.decode('utf-8') for i in range(self.__num_inner_eval)
                ]
                self.__higher_better_inner_eval = [
                    name.startswith(('auc', 'ndcg@', 'map@', 'average_precision')) for name in self.__name_inner_eval
                ]