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Commit 9c4ac8a9 authored by Augustin Zidek's avatar Augustin Zidek Committed by Copybara-Service
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Add a note about the AlphaFold output directory. 

PiperOrigin-RevId: 425323152
Change-Id: Id1aa81316c95617e970ce014f4a331d1ed49ec02
parent e93a9eb6
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README.md
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...@@ -230,6 +230,11 @@ with 12 vCPUs, 85 GB of RAM, a 100 GB boot disk, the databases on an additional ...@@ -230,6 +230,11 @@ with 12 vCPUs, 85 GB of RAM, a 100 GB boot disk, the databases on an additional
pip3 install -r docker/requirements.txt pip3 install -r docker/requirements.txt
``` ```
1. Make sure that the output directory exists (the default is `/tmp/alphafold`)
and that you have sufficient permissions to write into it. You can make sure
that is the case by manually running `mkdir /tmp/alphafold` and
`chmod 770 /tmp/alphafold`.
1. Run `run_docker.py` pointing to a FASTA file containing the protein 1. Run `run_docker.py` pointing to a FASTA file containing the protein
sequence(s) for which you wish to predict the structure. If you are sequence(s) for which you wish to predict the structure. If you are
predicting the structure of a protein that is already in PDB and you wish to predicting the structure of a protein that is already in PDB and you wish to
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