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Commit 9c4ac8a9 authored by Augustin Zidek's avatar Augustin Zidek Committed by Copybara-Service
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Add a note about the AlphaFold output directory. 

PiperOrigin-RevId: 425323152
Change-Id: Id1aa81316c95617e970ce014f4a331d1ed49ec02
parent e93a9eb6
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README.md
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......@@ -230,6 +230,11 @@ with 12 vCPUs, 85 GB of RAM, a 100 GB boot disk, the databases on an additional
pip3 install -r docker/requirements.txt
```
1. Make sure that the output directory exists (the default is `/tmp/alphafold`)
and that you have sufficient permissions to write into it. You can make sure
that is the case by manually running `mkdir /tmp/alphafold` and
`chmod 770 /tmp/alphafold`.
1. Run `run_docker.py` pointing to a FASTA file containing the protein
sequence(s) for which you wish to predict the structure. If you are
predicting the structure of a protein that is already in PDB and you wish to
......
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