GitLab

* fix_torch_device_generate_test

* remove @

* up

* fix_torch_device_generate_test

* remove @

* finish better examples for marian flax

* fix_torch_device_generate_test

* remove @

* add marian

* finish make style

* add model

* add docs

* add test

* add integration tests

* up

* solve bug

* correct tests

* correct some tests

* Apply suggestions from code review
Co-authored-by: Suraj Patil <surajp815@gmail.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* correct adapt marian

* finish
Co-authored-by: Patrick von Platen <patrick@huggingface.co>
Co-authored-by: Suraj Patil <surajp815@gmail.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Copy BART to MBart and rename some stuff

* Add copy statements pointing to FlaxBart

* Update/add some common files

* Update shift_tokens_rigth + fix imports

* Fix shift_tokens_right method according to MBart implementation

* Update shift_tokens_right in tests accordingly

* Fix the import issue and update docs file
* make style quality

* Do some minor changes according to patil-suraj suggestions

* Change the order of normalization layer and attention

* Add some copu statementes

* Update generate method and add integration test for mBart

* Make a few updates after a review

Besides, add `lang_code_to_id` to MBartTokenizeFast

* fix-copies; make style quality

* Apply suggestions from code review

* Apply suggestions from code review

* Apply suggestions from code review

* fix output type, style

* add copied from

* resolve conflicts
Co-authored-by: Suraj Patil <surajp815@gmail.com>

* flax gpt neo

* fix query scaling

* update generation test

* use flax model for test

* add RoFormerTokenizerFast into AutoTokenizer

* fix typo in roformer docs

* make onnx export happy

* update RoFormerConfig embedding_size

* use jieba not rjieba

* fix 12244 and make test_alignement passed

* update ARCHIVE_MAP

* make style & quality & fixup

* update

* make style & quality & fixup

* make style quality fixup

* update

* suggestion from LysandreJik
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>

* make style

* use rjieba
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>

* fix_torch_device_generate_test

* remove @

* start flax wav2vec2

* save intermediate

* forward pass has correct shape

* add weight norm

* add files

* finish ctc

* make style

* finish gumbel quantizer

* correct docstrings

* correct some more files

* fix vit

* finish quality

* correct tests

* correct docstring

* correct tests

* start wav2vec2 pretraining script

* save intermediate

* start pretraining script

* finalize pretraining script

* finish

* finish

* small typo

* finish

* correct

* Apply suggestions from code review
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Suraj Patil <surajp815@gmail.com>

* make style

* push
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Suraj Patil <surajp815@gmail.com>

* First pass

* More progress

* Add support for local attention

* More improvements

* More improvements

* Conversion script working

* Add CanineTokenizer

* Make style & quality

* First draft of integration test

* Remove decoder test

* Improve tests

* Add documentation

* Mostly docs improvements

* Add CanineTokenizer tests

* Fix most tests on GPU, improve upsampling projection

* Address most comments by @dhgarrette

* Remove decoder logic

* Improve Canine tests, improve docs of CanineConfig

* All tokenizer tests passing

* Make fix-copies and fix tokenizer tests

* Fix test_model_outputs_equivalence test

* Apply suggestions from @sgugger's review
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Address some more comments

* Add support for hidden_states and attentions of shallow encoders

* Define custom CanineModelOutputWithPooling, tests pass

* First pass

* More progress

* Add support for local attention

* More improvements

* More improvements

* Conversion script working

* Add CanineTokenizer

* Make style & quality

* First draft of integration test

* Remove decoder test

* Improve tests

* Add documentation

* Mostly docs improvements

* Add CanineTokenizer tests

* Fix most tests on GPU, improve upsampling projection

* Address most comments by @dhgarrette

* Remove decoder logic

* Improve Canine tests, improve docs of CanineConfig

* All tokenizer tests passing

* Make fix-copies and fix tokenizer tests

* Fix test_model_outputs_equivalence test

* Apply suggestions from @sgugger's review
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Address some more comments

* Make conversion script work for Canine-c too

* Fix tokenizer tests

* Remove file
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* copy pytorch-t5

* init

* boom boom

* forward pass same

* make generation work

* add more tests

* make test work

* finish normal tests

* make fix-copies

* finish quality

* correct slow example

* correct slow test

* version table

* upload models

* Update tests/test_modeling_flax_t5.py

* correct incorrectly deleted line
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>
Co-authored-by: Patrick von Platen <patrick@huggingface.co>

* [run_clm.py] restore caching

* style

* [t5 doc] make the example work out of the box

This PR expands the training example to include the correct model type for the example to work, e.g. with `T5Model` this example will break.

* Update docs/source/model_doc/t5.rst
Co-authored-by: Suraj Patil <surajp815@gmail.com>

* expand the other example
Co-authored-by: Suraj Patil <surajp815@gmail.com>

* add FlaxAutoModelForSeq2SeqLM

* Remove unused variables

* Improve docs

* Fix docs of segmentation masks
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>

* fix_torch_device_generate_test

* remove @

* add hubert

* add first test file

* more docs

* fix bugs

* fix bug

* finish

* finish

* finish docstring

* fix

* fix

* finalize

* add to ignored

* finish

* Apply suggestions from code review

* correct naming

* finish

* fix auto config

* finish

* correct convert script

* Apply suggestions from code review
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>
Co-authored-by: Suraj Patil <surajp815@gmail.com>

* apply suggestions lysandre & suraj
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>
Co-authored-by: Suraj Patil <surajp815@gmail.com>

* add flax bert

* bert -> bigbird

* original_full ported

* add debugger

* init block sparse

* fix copies ; gelu_fast -> gelu_new

* block sparse port

* fix block sparse

* block sparse working

* all ckpts working

* fix-copies

* make quality

* init tests

* temporary fix for FlaxBigBirdForMultipleChoice

* skip test_attention_outputs

* fix

* gelu_fast -> gelu_new ; fix multiple choice model

* remove nsp

* fix sequence classifier

* fix

* make quality

* make fix-copies

* finish

* Delete debugger.ipynb

* Update src/transformers/models/big_bird/modeling_flax_big_bird.py

* make style

* finish

* bye bye jit flax tests
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>

* [WIP] Add TFWav2Vec2Model

Work in progress for adding a tensorflow version of Wav2Vec2

* feedback changes

* small fix

* Test Feedback Round 1

* Add SpecAugment and CTC Loss

* correct spec augment mask creation

* docstring and correct copyright

* correct bugs

* remove bogus file

* finish tests correction

* del unnecessary layers

* Update src/transformers/models/wav2vec2/modeling_tf_wav2vec2.py
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>

* make style

* correct final bug

* Feedback Changes
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>

* Start working on FlaxBart

* Create modeling_flax_bart.py

* Write FlaxBartAttention

* Add FlaxBartEncoderLayer

* Add FlaxBartDecoderLayer and some typing

* Add helepr function for FlaxBart

* shift_tokens_right

* _make_causal_mask

* _expand_mask

* Add PositionalEmbedding and fix init_std naming

* Add FlaxBartPretrainedModel

* Add FlaxBartEncoder

* Add FlaxBartEncoder

* Add FlaxBartEncoder among modules to be imported

* YET WE CANNOT INITIALIZE THAT!! :(

* Make BartEncoder working

Change BartEncoder to instance of nn.Module so far

* Add FlaxBartDecoder

* Add FlaxBartModel

* TODO to make model run -> Prepapre model inputs

* Resolve padding

* Add FlaxBartModel

* Add FlaxBartModel into importable modules

* Remove FlaxBartEncoder and FlaxBartDecoder from importable modules

* make style; not properly working

* make style; make quality not pass due to some import I left

* Remove TODO for padding_idx in nn.Embed so far

* Add FlaxBartForConditionalGeneration

* Incorporate Flax model output classes, i.e. return_dict

* Add another models and incorporate use_cache arg

* Add FlaxBartForSequenceClassification and FlaxBartForQuestionAnswering

* Incorporate use_cache arg from PyTorch implementation

* Add all necessary Flax output utils

* Add FlaxBartForCausalLM; not working yet'

* Add minor improvements; still lacks some functionality

* Update docs, src and tests

* Add support of FlaxBart to docs/source

* Fix some bugs in FlaxBart souce code

* Add some neccessary tests for FlaxBart models - jit_compilation not passing

* Fix tests and add test_head_masking

* Fix tests for @jax.jit computation

* Add test_head_masking

* Migrate FlaxBart tests from jax.numpy to numpy

* Remove FlaxBartForCausalLM

* Clean repo

* fix bart model weight structure

* Fix FlaxBartForSequenceClassification

Slicing is not possible to use below jit, therefore, selecting sentence
representation from hidden_states must be changed.

* Allow FlaxBartForSequenceClassification for testing pt_flax equivalence

* Allow testing for FlaxBartForQA for pt_flax equivalence

* Add a comment to FlaxBartForSequenceClassification + change noise from 1e-3 to 1e-6

* remove past_key_values

* remove inputs_mebeds and make input_ids required

* add position ids

* re-write attention layer

* fix dataclass

* fix pos embeds and attention output

* fix pos embeds

* expose encode method

* expose decode method

* move docstring to top

* add cache for causal attn layer

* remove head masking for now

* s2s greedy search first pass

* boom boom

* fix typos

* fix greedy generate for bart

* use encoder, decoder layers instead of num_hidden_layers

* handle encoder_outputs

* cleanup

* simplify decoding

* more clean-up

* typos

* Change header + add {decoder_,}position_ids into 2 models

* add BartConfig

* fix existing tests

* add encode, decode methods

* Fix shift_tokens_right for JIT compilation + clarify one condition

* fix decode

* encoder => encode

* simplify generate

* add tests for encode and decode

* style

* add tests for cache

* fix equivalence tests

* sample generate now works with seq2seq

* generation tests

* initialize dense layers

* docstring and cleanup

* quality

* remove get/set input_embeddings

* address Patricks suggestions

* decode for every model, remove encoder_outputs from call

* update tests accordingly

* decode returns only decoder outputs and logits

* fix arguments

* doc encode, decode methods

* correct base_model_prefix

* fix test for seq classif model

* fix docs
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>
Co-authored-by: Suraj Patil <surajp815@gmail.com>

* adding vit for flax

* added test for Flax-vit and some bug-fixes

* overrided methods where variable changes were necessary for flax_vit test

* added FlaxViTForImageClassification for test

* Update src/transformers/models/vit/modeling_flax_vit.py
Co-authored-by: Suraj Patil <surajp815@gmail.com>

* made changes suggested in PR

* Adding jax-vit models for autoimport

* swapping num_channels and height,width dimension

* fixing the docstring for torch-like inputs for VIT

* add model to main init

* add docs

* doc, fix-copies

* docstrings

* small test fixes

* fix docs

* fix docstr

* Apply suggestions from code review
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>

* style
Co-authored-by: jayendra <jayendra@infocusp.in>
Co-authored-by: Suraj Patil <surajp815@gmail.com>
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>

* Working quantizer forward

* Working quantizer forward

* Clean up unused model parts, test reproducibility

* Working quantizer forward

* Clean up unused model parts, test reproducibility

* Remove custom outputs from the shared ones

* correct conversion

* correct bug

* add first pretrain script

* save intermediate

* static shapes

* save intermediate

* finish first pretrain script version

* more refactor

* remove wanddb

* refactor more

* improve test

* correct perplexity compute bug

* finish model implementation

* add to docs

* finish docs

* finish pretraining script

* finish pretraining script

* remove wandb

* finish PR for merge

* finish config

* finish

* make deepspeed work

* Apply suggestions from code review
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* apply suggestions

* fix flaky test
Co-authored-by: patrickvonplaten <patrick.v.platen@gmail.com>
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Squash all commits of modeling_detr_v7 branch into one

* Improve docs

* Fix tests

* Style

* Improve docs some more and fix most tests

* Fix slow tests of ViT, DeiT and DETR

* Improve replacement of batch norm

* Restructure timm backbone forward

* Make DetrForSegmentation support any timm backbone

* Fix name of output

* Address most comments by @LysandreJik

* Give better names for variables

* Conditional imports + timm in setup.py

* Address additional comments by @sgugger

* Make style, add require_timm and require_vision to testsé

* Remove train_backbone attribute of DetrConfig, add methods to freeze/unfreeze backbone

* Add png files to fixtures

* Fix type hint

* Add timm to workflows

* Add `BatchNorm2d` to the weight initialization

* Fix retain_grad test

* Replace model checkpoints by Facebook namespace

* Fix name of checkpoint in test

* Add user-friendly message when scipy is not available

* Address most comments by @patrickvonplaten

* Remove return_intermediate_layers attribute of DetrConfig and simplify Joiner

* Better initialization

* Scipy is necessary to get sklearn metrics

* Rename TimmBackbone to DetrTimmConvEncoder and rename DetrJoiner to DetrConvModel

* Make style

* Improve docs and add 2 community notebooks
Co-authored-by: Lysandre <lysandre.debut@reseau.eseo.fr>

* fix xref to generate

* do the same for search methods

* style

* style

* Init VisualBERT

* Add cookie-cutter, Config, and Embeddings

* Add preliminary Model

* Add Bert analogous classes

* Add basic code for NLVR, VQA, Flickr

* Update Init

* Fix VisualBert Downstream Models

* Rename classifier to cls

* Comment position_ids buffer

* Remove sentence image predictor output

* Update output dicts

* Remove unnecessary files

* Fix Auto Modeling

* Fix transformers init

* Add conversion script

* Add conversion script

* Fix docs

* Update visualbert modelling

* Update configuration

* Style fixes

* Add model and integration tests

* Add all tests

* Update model mapping

* Add simple detector from original repository

* Update docs and configs

* Fix style

* Fix style

* Update docs

* Fix style

* Fix import issues in style

* Fix style

* Add changes from review

* Fix style

* Fix style

* Update docs

* Fix style

* Fix style

* Update docs/source/model_doc/visual_bert.rst
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/models/visual_bert/modeling_visual_bert.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update tests/test_modeling_visual_bert.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/models/visual_bert/modeling_visual_bert.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/models/visual_bert/modeling_visual_bert.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/models/visual_bert/modeling_visual_bert.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Add changes from review

* Remove convert run script

* Add changes from review

* Update src/transformers/models/visual_bert/modeling_visual_bert.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/models/visual_bert/modeling_visual_bert.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/models/visual_bert/modeling_visual_bert.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/models/visual_bert/modeling_visual_bert.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/models/visual_bert/modeling_visual_bert.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Add changes from review

* Add changes from review

* Add visual embedding example in docs

* Fix "copied from" comments

* Add changes from review

* Fix error, style, checkpoints

* Update docs

* Fix integration tests

* Fix style
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* allow tf to use uneven num of layers

* add tokenizer

* finish docs

* finish docs

* Apply suggestions from code review

* include in index

* finish

* Update docs/source/model_doc/byt5.rst
Co-authored-by: NielsRogge <48327001+NielsRogge@users.noreply.github.com>

* apply sylvais suggestions

* make style
Co-authored-by: NielsRogge <48327001+NielsRogge@users.noreply.github.com>

* add flax CLIP

* default input_shape

* add tests

* fix test

* fix name

* fix docs

* fix shapes

* attend at least 1 token

* flax conv to torch conv

* return floats

* fix equivalence tests

* fix import

* return attention_weights and update tests

* fix dosctrings

* address patricks comments

* input_shape arg

* add tests for get_image_features and get_text_features methods

* fix tests

* seq classification changes

* fix tests

* add roformer

* Update docs/source/model_doc/roformer.rst
Co-authored-by: Suraj Patil <surajp815@gmail.com>

* Update docs/source/model_doc/roformer.rst
Co-authored-by: Suraj Patil <surajp815@gmail.com>

* update

* add TFRoFormerSinusoidalPositionalEmbedding and fix TFMarianSinusoidalPositionalEmbedding

* update docs

* make style and make quality

* roback

* unchanged

* rm copies from , this is a error in TFMarianSinusoidalPositionalEmbedding

* update Copyright year

* move # Add modeling imports here to the correct position

* max_position_embeddings can be set to 1536

* # Copied from transformers.models.bert.modeling_bert.BertOutput with Bert->RoFormer

* # Copied from transformers.models.bert.modeling_bert.BertLayer.__init__ with Bert->RoFormer

* update tokenization_roformer

* make style

* add staticmethod apply_rotary_position_embeddings

* add TF staticmethod apply_rotary_position_embeddings

* update torch apply_rotary_position_embeddings

* fix tf apply_rotary_position_embeddings error

* make style

* add pytorch RoFormerSelfAttentionRotaryPositionEmbeddingTest

* add TF rotary_position_embeddings test

* update test_modeling_rofomer

* Update docs/source/model_doc/roformer.rst
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/__init__.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/__init__.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/__init__.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/__init__.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/models/roformer/convert_roformer_original_tf_checkpoint_to_pytorch.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/models/roformer/modeling_roformer.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/models/roformer/modeling_roformer.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Update src/transformers/models/roformer/modeling_tf_roformer.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* refact roformer tokenizer

* add RoFormerTokenizerFast

* add RoFormerTokenizationTest

* add require_jieba

* update Copyright

* update tokenizer & add copy from

* add option rotary_value

* use rust jieba

* use rjieba

* use rust jieba

* fix test_alignement_methods

* slice normalized_string is too slow

* add config.embedding_size when embedding_size!=hidden_size

* fix pickle tokenizer

* Update docs/source/model_doc/roformer.rst
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>

* make style and make quality
Co-authored-by: Suraj Patil <surajp815@gmail.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>

* flax gpt2

* combine masks

* handle shared embeds

* add causal LM sample

* style

* add tests

* style

* fix imports, docs, quality

* don't use cache

* add cache

* add cache 1st version

* make use cache work

* start adding test for generation

* finish generation loop compilation

* rewrite test

* finish

* update

* update

* apply sylvains suggestions

* update

* refactor

* fix typo
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>

* begin second draft

* fix import, style

* add loss

* fix embeds, logits_scale, and projection

* fix imports

* add conversion script

* add feature_extractor and processor

* style

* add tests for tokenizer, extractor and processor

* add vision model tests

* add weight init

* add more tests

* fix save_load  test

* model output, dosstrings, causal mask

* config doc

* add clip model tests

* return dict

* bigin integration test

* add integration tests

* fix-copies

* fix init

* Clip => CLIP

* fix module name

* docs

* fix doc

* output_dim => projection_dim

* fix checkpoint names

* remoe fast tokenizer file

* fix conversion script

* fix tests, quality

* put causal mask on device

* Apply suggestions from code review
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* fix attribute test

* style

* address sylvains comments

* style

* fix docstrings

* add qucik_gelu in activations, docstrings

* clean-up attention test

* fix act fun

* fix config

* fix torchscript tests

* even batch_size

* remove comment

* fix ouput tu_tuple

* fix save load tests

* fix add tokens test

* add fast tokenizer

* update copyright

* new processor API

* fix docs

* docstrings

* docs

* fix doc

* fix doc

* fix tokenizer

* fix import in doc example

* Apply suggestions from code review
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* check types of config

* valhalla => openai

* load image using url

* fix test

* typo
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Added Big Bird Fast Tokenizer initial file

* style fixes

* flake fixes

* Added big bird fast tokenizer to init files

* Added big bird fast to Auto tokenization

* fix styles

* minor quality fixes

* Added initial test code

* Fix SpmConverter when precompiled_charsmap doesn't exist

* fixed post processor

* minor style fix

* minor fix input names

* Actually fix identity normalization

* style

* Added token type ids to fast tokenizer

* style

* flake fix

* fix copies
Co-authored-by: Anthony MOI <m.anthony.moi@gmail.com>

* Add the ImageClassificationPipeline

* Code review
Co-authored-by: patrickvonplaten <patrick.v.platen@gmail.com>

* Have `load_image` at the module level
Co-authored-by: patrickvonplaten <patrick.v.platen@gmail.com>

* init bigbird pegasus

* add debugging nb ; update config

* init conversion

* update conversion script

* complete conversion script

* init forward()

* complete forward()

* add tokenizer

* add some slow tests

* commit current

* fix copies

* add docs

* add conversion script for bigbird-roberta-summarization

* remove TODO

* small fixups

* correct tokenizer

* add bigbird core for now

* fix config

* fix more

* revert pegasus-tokenizer back

* make style

* everything working for pubmed; yayygit status

* complete tests finally

* remove bigbird pegasus tok

* correct tokenizer

* correct tests

* add tokenizer files

* finish make style

* fix test

* update

* make style

* fix tok utils base file

* make fix-copies

* clean a bit

* small update

* fix some suggestions

* add to readme

* fix a bit, clean tests

* fix more tests

* Update src/transformers/__init__.py

* Update src/transformers/__init__.py

* make fix-copies

* complete attn switching, auto-padding left

* make style

* fix auto-padding test

* make style

* fix batched attention tests

* put tolerance at 1e-1 for stand-alone decoder test

* fix docs

* fix tests

* correct slow tokenizer conversion

* Apply suggestions from code review
Co-authored-by: Suraj Patil <surajp815@gmail.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* complete remaining suggestions

* fix test
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>
Co-authored-by: Suraj Patil <surajp815@gmail.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* add electra model to flax

* Remove Electra Next Sentence Prediction model added by mistake

* fix parameter sharing and loosen equality threshold

* fix styling issues

* add mistaken removen imports

* fix electra table

* Add FlaxElectra to automodels and fixe docs

* fix issues pointed out the PR

* fix flax electra to comply with latest changes

* remove stale class

* add copied from
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>

* add flax roberta

* make style

* correct initialiazation

* modify model to save weights

* fix copied from

* fix copied from

* correct some more code

* add more roberta models

* Apply suggestions from code review

* merge from master

* finish

* finish docs
Co-authored-by: Patrick von Platen <patrick@huggingface.co>

* Rebase with master

* Minor bug fix in docs

* Copy files from adding_luke_v2 and improve docs

* change the default value of use_entity_aware_attention to True

* remove word_hidden_states

* fix head models

* fix tests

* fix the conversion script

* add integration tests for the pretrained large model

* improve docstring

* Improve docs, make style

* fix _init_weights for pytorch 1.8

* improve docs

* fix tokenizer to construct entity sequence with [MASK] entity when entities=None

* Make fix-copies

* Make style & quality

* Bug fixes

* Add LukeTokenizer to init

* Address most comments by @patil-suraj and @LysandreJik

* rename _compute_extended_attention_mask to get_extended_attention_mask

* add comments to LukeSelfAttention

* fix the documentation of the tokenizer

* address comments by @patil-suraj, @LysandreJik, and @sgugger

* improve docs

* Make style, quality and fix-copies

* Improve docs

* fix docs

* add "entity_span_classification" task

* update example code for LukeForEntitySpanClassification

* improve docs

* improve docs

* improve the code example in luke.rst

* rename the classification layer in LukeForEntityClassification from typing to classifier

* add bias to the classifier in LukeForEntitySpanClassification

* update docs to use fine-tuned hub models in code examples of the head models

* update the example sentences

* Make style & quality

* Add require_torch to tokenizer tests

* Add require_torch to tokenizer tests

* Address comments by @sgugger and add community notebooks

* Make fix-copies
Co-authored-by: Ikuya Yamada <ikuya@ikuya.net>

* Base move

* Examples reorganization

* Update references

* Put back test data

* Move conftest

* More fixes

* Move test data to test fixtures

* Update path

* Apply suggestions from code review
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>

* Address review comments and clean
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>

* Honor contributors to models

* Fix typo

* Address review comments

* Add more authors

* Add prefix to examples in model_doc rst

* Apply suggestions from code review
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>

* Indent code block

* Indent code blocks version 2

* Quality