GitLab

* added BioGptForSequenceClassification

* added source of copied code

* typo

* Format code with black

* Update comments for copied code

* Remove code copy comment

* Apply suggestions from code review
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Arthur <48595927+ArthurZucker@users.noreply.github.com>

* Fix failing tests

* Update code copied from comments

* Fix code quality

* Update src/transformers/models/biogpt/modeling_biogpt.py
Co-authored-by: Arthur <48595927+ArthurZucker@users.noreply.github.com>

* Apply suggestions from code review
Co-authored-by: Arthur <48595927+ArthurZucker@users.noreply.github.com>

* Fix lint error

* Update src/transformers/models/biogpt/modeling_biogpt.py
Co-authored-by: Arthur <48595927+ArthurZucker@users.noreply.github.com>

* Rename model to biogpt for consistency

* Add PipelineTesterMixin to test_modeling_biogpt.py

* Apply suggestions from code review
Co-authored-by: amyeroberts <22614925+amyeroberts@users.noreply.github.com>

* Resolve merge confict

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Co-authored-by: Guillem García Subies <37592763+GuillemGSubies@users.noreply.github.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Arthur <48595927+ArthurZucker@users.noreply.github.com>
Co-authored-by: amyeroberts <22614925+amyeroberts@users.noreply.github.com>

* added biogpt token classifier

* fix reviews

* Updated modeling_biogpt.py
Co-authored-by: Younes Belkada <49240599+younesbelkada@users.noreply.github.com>

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Co-authored-by: Younes Belkada <49240599+younesbelkada@users.noreply.github.com>

* Add PipelineTesterMixin

* remove class PipelineTestCaseMeta

* move validate_test_components

* Add for ViT

* Add to SPECIAL_MODULE_TO_TEST_MAP

* style and quality

* Add feature-extraction

* update

* raise instead of skip

* add tiny_model_summary.json

* more explicit

* skip tasks not in mapping

* add availability check

* Add Copyright

* A way to diable irrelevant tests

* update with main

* remove disable_irrelevant_tests

* skip tests

* better skip message

* better skip message

* Add all pipeline task tests

* revert

* Import PipelineTesterMixin

* subclass test classes with PipelineTesterMixin

* Add pipieline_model_mapping

* Fix import after adding pipieline_model_mapping

* Fix style and quality after adding pipieline_model_mapping

* Fix one more import after adding pipieline_model_mapping

* Fix style and quality after adding pipieline_model_mapping

* Fix test issues

* Fix import requirements

* Fix mapping for MobileViTModelTest

* Update

* Better skip message

* pipieline_model_mapping could not be None

* Remove some PipelineTesterMixin

* Fix typo

* revert tests_fetcher.py

* update

* rename

* revert

* Remove PipelineTestCaseMeta from ZeroShotAudioClassificationPipelineTests

* style and quality

* test fetcher for all pipeline/model tests

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Co-authored-by: ydshieh <ydshieh@users.noreply.github.com>

* Result of black 23.1

* Update target to Python 3.7

* Switch flake8 to ruff

* Configure isort

* Configure isort

* Apply isort with line limit

* Put the right black version

* adapt black in check copies

* Fix copies

* biogpt initial commit

* updated init

* fix faster decoding with use_cache

* 1. fix input_ids and input_embeds with correct device
2. added _keys_to_ignore_on_load_missing
3. updated prepare_inputs_for_generation

* add activation_dropout and scale_embedding

* replace fsmt attention with bart attention

* added test

* run make fix-copies

* doc init and fix build

* updated README with proper information

* 1. added tips to docs
2. updated BioGptTokenizer func

* 1. added tokenizer test
2. refactor tokenizer

* make fixup

* add biogpt fairseq to hf converter

* updated layer names more
similar to original checkpoints

* config update doc string and set defaults

* added "#copied" from bart model and
updated doc strings

* enable model_input_names in tokenizer

* 1.  positionalembedding depending on attention_mask
2. added attention mask to prepare for generation

* added test to verify past and generation

* BioGptLMHeadModel -> BioGptForCausalLM

* fix typo

* tokenization and test
Copyright and updated assertion

* updated Copyright and
one func at time in line

* Copyright updates and
minor doc fix

* replace assertion with ValueError

* rm extra space

* added code syntax

* revert cmnt position change

* add tokenizer to auto

* updated doc string

* tokenizer doc string update

* biogpt hub model update to microsoft/biogpt

* make fixup

* rm cmnt to fix flake8 5.0.4 vs 6 error