Commits · fdf836f1c8628a7ecad4611f64cadfb267944e24 · OpenDAS / OpenFold

26 Nov, 2021 4 commits
- Merge branch 'main' of ssh://github.com/aqlaboratory/openfold into main · fdf836f1
  Gustaf Ahdritz authored Nov 25, 2021
  
  fdf836f1
- Remove vestigial comment · 1d68bde1
  Gustaf Ahdritz authored Nov 25, 2021
  
  1d68bde1
- Fix no-GPU behavior · f3f224a9
  Gustaf Ahdritz authored Nov 25, 2021
  
  f3f224a9
- Add numpy version of DRMSD function · 33b0a9df
  Gustaf Ahdritz authored Nov 25, 2021
  
  33b0a9df
25 Nov, 2021 4 commits
- Remove redundant parameter · a411888a
  Gustaf Ahdritz authored Nov 25, 2021
  
  a411888a
- Fix bug in inference script weight importing · 341ff3d9
  Gustaf Ahdritz authored Nov 25, 2021
  
  341ff3d9
- Merge branch 'main' of ssh://github.com/aqlaboratory/openfold into main · 6448d57c
  Gustaf Ahdritz authored Nov 24, 2021
  
  6448d57c
- Fix .core parsing bug · 6133ea95
  Gustaf Ahdritz authored Nov 24, 2021
  
  6133ea95
24 Nov, 2021 9 commits
- Update README.md · 790b0b5c
  Gustaf Ahdritz authored Nov 24, 2021
  
  790b0b5c
- Improve citation formatting · ef29951c
  Gustaf Ahdritz authored Nov 24, 2021
  
  ef29951c
- Remove version number from CITATION.cff · 965af0b3
  Gustaf Ahdritz authored Nov 24, 2021
  
  965af0b3
- Add some ORCID IDs · 7b02d1a4
  Gustaf Ahdritz authored Nov 24, 2021
  
  7b02d1a4
- Add CITATION.cff · 8320e13a
  Gustaf Ahdritz authored Nov 24, 2021
  
  8320e13a
- Expand citation section · 99040ee6
  Gustaf Ahdritz authored Nov 24, 2021
  
  99040ee6
- Update Zenodo link · f0c898b8
  Gustaf Ahdritz authored Nov 24, 2021
  
  f0c898b8
- Add sample citation · ae546bbf
  Gustaf Ahdritz authored Nov 24, 2021
  
  ae546bbf
- Add DOI · fd34b155
  Gustaf Ahdritz authored Nov 24, 2021
  
  fd34b155
23 Nov, 2021 2 commits
- Fix distillation bug · 79f9f03d
  Gustaf Ahdritz authored Nov 23, 2021
  
  79f9f03d
- Remove redundancy in data_transforms · b32bfeec
  Gustaf Ahdritz authored Nov 23, 2021
  
  b32bfeec
22 Nov, 2021 6 commits
- Delete .dockerignore · 03bb003a
  Gustaf Ahdritz authored Nov 22, 2021
  
  03bb003a
- Delete Dockerfile · 4ff033db
  Gustaf Ahdritz authored Nov 22, 2021
  
  4ff033db
- Add alternative fasta file extension · 52800ff0
  Gustaf Ahdritz authored Nov 22, 2021
  
  52800ff0
- Add note about model initialization · d63363b7
  Gustaf Ahdritz authored Nov 22, 2021
  
  d63363b7
- Add option to run with no MSAs · 61df432b
  Gustaf Ahdritz authored Nov 22, 2021
  
  61df432b
- Note existence of config in README · 72b89b59
  Gustaf Ahdritz authored Nov 22, 2021
  
  72b89b59
20 Nov, 2021 2 commits
- Clarify README · 9329de4d
  Gustaf Ahdritz authored Nov 20, 2021
  
  9329de4d
- Remove submodule scripting from inference script · b8b5be86
  Gustaf Ahdritz authored Nov 20, 2021
  
  b8b5be86
19 Nov, 2021 7 commits
- Remove redundant parameter, add documentation for cache clearing · 71057ac7
  Gustaf Ahdritz authored Nov 19, 2021
  
  71057ac7
- Add cache clearing to config · 4bd43751
  Gustaf Ahdritz authored Nov 19, 2021
  
  4bd43751
- Clear cuda cache between extra MSA blocks to alleviate fragmentation · 263661a3
  Gustaf Ahdritz authored Nov 19, 2021
  
  263661a3
- Update README.md · 0ddf27a9
  Gustaf Ahdritz authored Nov 19, 2021
  
  0ddf27a9
- Update README.md · a1dbbe9c
  Gustaf Ahdritz authored Nov 19, 2021
  
  a1dbbe9c
- Fix bugs from previous commit · 862dab6f
  Gustaf Ahdritz authored Nov 19, 2021
  
  862dab6f
- Make more components TorchScript-able, add tracing · 34e9363c
  Gustaf Ahdritz authored Nov 19, 2021
  
  34e9363c
18 Nov, 2021 6 commits
- Standardize IPA formatting · 34e4e6ce
  Gustaf Ahdritz authored Nov 18, 2021
  
  34e4e6ce
- Update TorchScript call in inference script · 8d1119df
  Gustaf Ahdritz authored Nov 18, 2021
  
  8d1119df
- Free used recycling tensors · 326e08de
  Gustaf Ahdritz authored Nov 18, 2021
  
  326e08de
- Update name of file in Dockerfile · a7e631cc
  Gustaf Ahdritz authored Nov 18, 2021
  
  a7e631cc
- Move TorchScript utils · f63f2f6e
  Gustaf Ahdritz authored Nov 17, 2021
  
  f63f2f6e
- Add documentation to affine_utils · d3acabd1
  Gustaf Ahdritz authored Nov 17, 2021
  
  d3acabd1