Commits · edb7d341f0d7ad01b9e0807ee8c90fa1f096f642 · OpenDAS / OpenFold

26 Apr, 2022 1 commit
- Add memory-efficient attention kernels · edb7d341
  Gustaf Ahdritz authored Apr 26, 2022
  
  edb7d341
21 Apr, 2022 2 commits
- Merge pull request #97 from CyrusBiotechnology/small-bugfixes · 816c1843
  Gustaf Ahdritz authored Apr 21, 2022
```
fixing CUDA versions in dockerfile and a small bug in run_pretrained_openfold.py
```
  816c1843
- fixing dockerfile and small bug in run_pretrained_openfold.py · 102c446f
  Sam DeLuca authored Apr 21, 2022
  
  102c446f
20 Apr, 2022 3 commits
- Correct wording in README · a43848dc
  Gustaf Ahdritz authored Apr 20, 2022
  
  a43848dc
- Add LMA arXiv link to README · bc35baa0
  Gustaf Ahdritz authored Apr 20, 2022
  
  bc35baa0
- Add features to README · 7e2b311f
  Gustaf Ahdritz authored Apr 20, 2022
  
  7e2b311f
19 Apr, 2022 1 commit
- Fix template bugs · 591d10d2
  Gustaf Ahdritz authored Apr 19, 2022
  
  591d10d2
15 Apr, 2022 1 commit
- Add missing pLDDT test · 8c169fb6
  Gustaf Ahdritz authored Apr 15, 2022
  
  8c169fb6
14 Apr, 2022 1 commit
- Fix evoformer paths in some old tests · 857e9b7c
  Gustaf Ahdritz authored Apr 13, 2022
  
  857e9b7c
13 Apr, 2022 1 commit
- Remove exception for num_recycle=0 · 9a8910f9
  Gustaf Ahdritz authored Apr 13, 2022
  
  9a8910f9
06 Apr, 2022 1 commit
- Improve memory management in extra msa stack · e310bba4
  Gustaf Ahdritz authored Apr 05, 2022
  
  e310bba4
30 Mar, 2022 5 commits
- Add latest FASTA parser · cdadff32
  Gustaf Ahdritz authored Mar 30, 2022
  
  cdadff32
- One more FASTA parsing fix... · dcc90728
  Gustaf Ahdritz authored Mar 29, 2022
  
  dcc90728
- Fix FASTA parsing again (hopefully for good) · 094e338f
  Gustaf Ahdritz authored Mar 29, 2022
  
  094e338f
- Fix FASTA parsing bug in inference script · c59a85b6
  Gustaf Ahdritz authored Mar 29, 2022
  
  c59a85b6
- Undo DeepSpeed config change · f362ebff
  Gustaf Ahdritz authored Mar 29, 2022
  
  f362ebff
29 Mar, 2022 3 commits
- Fix FASTA parsing bug in inference script, add option to save outputs · 16e0082f
  Gustaf Ahdritz authored Mar 29, 2022
  
  16e0082f
- Fix DeepSpeed config builder · 9f558178
  Gustaf Ahdritz authored Mar 29, 2022
  
  9f558178
- Fix bug in DeepSpeed config · 47f1d66a
  Gustaf Ahdritz authored Mar 29, 2022
  
  47f1d66a
23 Mar, 2022 1 commit
- Fix bug in DRMSD function · 2e3404a1
  Gustaf Ahdritz authored Mar 23, 2022
  
  2e3404a1
21 Mar, 2022 1 commit
- Fix default in LR scheduler · 86a1f756
  Gustaf Ahdritz authored Mar 21, 2022
  
  86a1f756
20 Mar, 2022 2 commits
- Tweak training script. Install new LR scheduler · 3dcc01a7
  Gustaf Ahdritz authored Mar 20, 2022
  
  3dcc01a7
- Add DRMSD edge case · 72a971b0
  Gustaf Ahdritz authored Mar 20, 2022
  
  72a971b0
19 Mar, 2022 1 commit
- Merge pull request #90 from KiddoZhu/main · fbbb0479
  Gustaf Ahdritz authored Mar 18, 2022
```
Fix parameter restorage after loading EMA parameters 
```
  fbbb0479
18 Mar, 2022 1 commit
- fix parameter restorage in validation · 9a08acd8
  Zhaocheng Zhu authored Mar 18, 2022
  
  9a08acd8
14 Mar, 2022 1 commit
- Fix bug in mmCIF cache script · c83c42e8
  Gustaf Ahdritz authored Mar 14, 2022
  
  c83c42e8
10 Mar, 2022 1 commit
- Add custom LR scheduler · c113e110
  Gustaf Ahdritz authored Mar 09, 2022
  
  c113e110
23 Feb, 2022 1 commit
- Fix typo in training script · 4a613bbe
  Gustaf Ahdritz authored Feb 23, 2022
  
  4a613bbe
22 Feb, 2022 7 commits
- Fix another undefined reference in training script · ff29bddb
  Gustaf Ahdritz authored Feb 22, 2022
  
  ff29bddb
- Remove redundant parameter in training script · 8f9865c3
  Gustaf Ahdritz authored Feb 22, 2022
  
  8f9865c3
- Fix undefined reference in training script · fd95b577
  Gustaf Ahdritz authored Feb 22, 2022
  
  fd95b577
- Add reference to specific issue · e6263425
  Gustaf Ahdritz authored Feb 22, 2022
  
  e6263425
- One last adjustment to generate_chain_data_cache.py · 950b02f0
  Gustaf Ahdritz authored Feb 22, 2022
  
  950b02f0
- Adjust default behavior of generate_chain_data_cache.py · 39860f93
  Gustaf Ahdritz authored Feb 22, 2022
  
  39860f93
- Fix chain data cache script bug, improve logging · 4c7c30b1
  Gustaf Ahdritz authored Feb 22, 2022
  
  4c7c30b1
18 Feb, 2022 2 commits
- Fix typo · 61d004a2
  Gustaf Ahdritz authored Feb 17, 2022
  
  61d004a2
- Fix name of new trainer option · cf01fe0b
  Gustaf Ahdritz authored Feb 17, 2022
  
  cf01fe0b
17 Feb, 2022 3 commits
- Add model config preset option · 8451dc68
  Gustaf Ahdritz authored Feb 17, 2022
  
  8451dc68
- Adjust formatting in evoformer.py · 3a3717cc
  Gustaf Ahdritz authored Feb 17, 2022
  
  3a3717cc
- Fix bug in evoformer · 484ce867
  Gustaf Ahdritz authored Feb 17, 2022
  
  484ce867