Commits · d2cf0f504cc80fcffc5de36b9ec155297594faa0 · OpenDAS / OpenFold

"examples/rust/.gitkeep" did not exist on "fd42de29338ed5b8b29b37fb3106145c45619429"

08 Jul, 2022 6 commits
- Minor reformatting & default change · d2cf0f50
  Gustaf Ahdritz authored Jul 08, 2022
  
  d2cf0f50
- Add FlashAttention support to msa.py · 0d148a7d
  Gustaf Ahdritz authored Jul 08, 2022
  
  0d148a7d
- Update README · bcb0b70f
  Gustaf Ahdritz authored Jul 08, 2022
  
  bcb0b70f
- Fix structure index bug · 749d736f
  Gustaf Ahdritz authored Jul 08, 2022
  
  749d736f
- Update requirements · a35a41ee
  Gustaf Ahdritz authored Jul 08, 2022
  
  a35a41ee
- Add tracing, TensorFloat32 utilization, and FlashAttention · 4f53624d
  Gustaf Ahdritz authored Jul 08, 2022
  
  4f53624d
07 Jul, 2022 1 commit
- Add CAMEO download script · db43f4ec
  Gustaf Ahdritz authored Jul 07, 2022
  
  db43f4ec
03 Jul, 2022 6 commits
- Fix bug in import script · cf041c7e
  Gustaf Ahdritz authored Jul 03, 2022
  
  cf041c7e
- Fix formatting · 91f031f5
  Gustaf Ahdritz authored Jul 03, 2022
  
  91f031f5
- Fix bug in weight import script · b1780f4e
  Gustaf Ahdritz authored Jul 03, 2022
  
  b1780f4e
- Add conditions to model constructor · 4c37c386
  Gustaf Ahdritz authored Jul 03, 2022
  
  4c37c386
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 6b547775
  Gustaf Ahdritz authored Jul 03, 2022
  
  6b547775
- Finish bringing the alignment index out of hiding · 9a617649
  Gustaf Ahdritz authored Jul 03, 2022
  
  9a617649
01 Jul, 2022 4 commits
- Reword caption a little · 15fb714a
  Gustaf Ahdritz authored Jul 01, 2022
  
  15fb714a
- Trim banner caption some more · b2e268cf
  Gustaf Ahdritz authored Jul 01, 2022
  
  b2e268cf
- Fix punctuation in banner caption · 8e08ec26
  Gustaf Ahdritz authored Jul 01, 2022
  
  8e08ec26
- Trim banner caption · 13834fa4
  Gustaf Ahdritz authored Jul 01, 2022
  
  13834fa4
30 Jun, 2022 1 commit
- Fix bug in template stack · 805b45cc
  Gustaf Ahdritz authored Jun 29, 2022
  
  805b45cc
29 Jun, 2022 2 commits
- Merge pull request #142 from CyrusBiotechnology/improved_model_outputs · d711134e
  Gustaf Ahdritz authored Jun 29, 2022
```
Properly handling file outputs when multiple models are evaluated
```
  d711134e
- improving file naming in run_pretrained_openfold · 7d23b654
  Sam DeLuca authored Jun 29, 2022
  
  7d23b654
28 Jun, 2022 1 commit
- Add obsolete flag to README · 3f57b4a0
  Gustaf Ahdritz authored Jun 28, 2022
  
  3f57b4a0
27 Jun, 2022 6 commits
- Add alignment DB scripts · 728f99fc
  Gustaf Ahdritz authored Jun 27, 2022
  
  728f99fc
- Fix bug in prep_mmseqs_dbs.sh · 4e730269
  Gustaf Ahdritz authored Jun 27, 2022
  
  4e730269
- Fix bug in download_data.sh · abc1ceb0
  Gustaf Ahdritz authored Jun 27, 2022
  
  abc1ceb0
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · a0a49fea
  Gustaf Ahdritz authored Jun 27, 2022
  
  a0a49fea
- Fix typo · 423e7ecf
  Gustaf Ahdritz authored Jun 27, 2022
  
  423e7ecf
- Merge remote-tracking branch 'origin/main' into improved_model_outputs · 080e37bb
  Sam DeLuca authored Jun 27, 2022
  
  080e37bb
24 Jun, 2022 7 commits
- Merge pull request #133 from CyrusBiotechnology/readme-caption · efcf80f5
  Gustaf Ahdritz authored Jun 24, 2022
```
adding a caption to the image in the readme
```
  efcf80f5
- adding a caption to the image in the readme · 2a901107
  Sam DeLuca authored Jun 24, 2022
  
  2a901107
- Restore layer_norm_m to its rightful place · a7c4159d
  Gustaf Ahdritz authored Jun 24, 2022
  
  a7c4159d
- Add note about OF->AF conversion script to README · c1c8999c
  Gustaf Ahdritz authored Jun 24, 2022
  
  c1c8999c
- Touch up OF/AF conversion script · d7367f9a
  Gustaf Ahdritz authored Jun 24, 2022
  
  d7367f9a
- Come full circle · 76599b12
  Gustaf Ahdritz authored Jun 24, 2022
  
  76599b12
- Fix formatting of install_hh_suite.sh · a35c44f5
  Gustaf Ahdritz authored Jun 23, 2022
  
  a35c44f5
23 Jun, 2022 6 commits
- Merge pull request #116 from brianloyal/main · 5d7b29d6
  Gustaf Ahdritz authored Jun 23, 2022
```
Update input processing
```
  5d7b29d6
- Merge branch 'aqlaboratory:main' into main · 9009c92a
  Brian Loyal authored Jun 23, 2022
  
  9009c92a
- Updated code to and fix bad fasta inputs · 294c04ad
  Brian Loyal authored Jun 23, 2022
  
  294c04ad
- Merge remote-tracking branch 'origin/main' into run-multiple-models · 2ada4f8d
  Sam DeLuca authored Jun 23, 2022
  
  2ada4f8d
- Fix install script · c871ccf3
  Gustaf Ahdritz authored Jun 23, 2022
  
  c871ccf3
- Fix git-lfs in Colab · c401749f
  Gustaf Ahdritz authored Jun 23, 2022
  
  c401749f