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Unverified Commit 9009c92a authored by Brian Loyal's avatar Brian Loyal Committed by GitHub
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Merge branch 'aqlaboratory:main' into main

parents 294c04ad c871ccf3
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Showing with 7 additions and 2 deletions
notebooks/OpenFold.ipynb
View file @ 9009c92a
...@@ -4,7 +4,7 @@ ...@@ -4,7 +4,7 @@
"metadata": { "metadata": {
"accelerator": "GPU", "accelerator": "GPU",
"colab": { "colab": {
"name": "Copy of OpenFold.ipynb", "name": "OpenFold.ipynb",
"provenance": [], "provenance": [],
"collapsed_sections": [] "collapsed_sections": []
}, },
...@@ -111,6 +111,11 @@ ...@@ -111,6 +111,11 @@
" %shell wget -q -P /content \\\n", " %shell wget -q -P /content \\\n",
" https://git.scicore.unibas.ch/schwede/openstructure/-/raw/7102c63615b64735c4941278d92b554ec94415f8/modules/mol/alg/src/stereo_chemical_props.txt\n", " https://git.scicore.unibas.ch/schwede/openstructure/-/raw/7102c63615b64735c4941278d92b554ec94415f8/modules/mol/alg/src/stereo_chemical_props.txt\n",
" pbar.update(1)\n", " pbar.update(1)\n",
"\n",
" # Install git-lfs\n",
" %shell sudo apt-get install git-lfs\n",
" %shell git lfs install\n",
"\n",
"except subprocess.CalledProcessError as captured:\n", "except subprocess.CalledProcessError as captured:\n",
" print(captured)\n", " print(captured)\n",
" raise" " raise"
......
scripts/install_third_party_dependencies.sh
View file @ 9009c92a
...@@ -32,7 +32,7 @@ mkdir -p tests/test_data/alphafold/common ...@@ -32,7 +32,7 @@ mkdir -p tests/test_data/alphafold/common
ln -rs openfold/resources/stereo_chemical_props.txt tests/test_data/alphafold/common ln -rs openfold/resources/stereo_chemical_props.txt tests/test_data/alphafold/common
echo "Downloading OpenFold parameters..." echo "Downloading OpenFold parameters..."
bash scripts/download_openfold_params.sh openfold/resources bash scripts/download_openfold_params_huggingface.sh openfold/resources
echo "Downloading AlphaFold parameters..." echo "Downloading AlphaFold parameters..."
bash scripts/download_alphafold_params.sh openfold/resources bash scripts/download_alphafold_params.sh openfold/resources
......
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