Commits · cf01fe0b2ca87383d72d8032b3c9447353abffdf · OpenDAS / OpenFold

18 Feb, 2022 1 commit
- Fix name of new trainer option · cf01fe0b
  Gustaf Ahdritz authored Feb 17, 2022
  
  cf01fe0b
17 Feb, 2022 3 commits
- Add model config preset option · 8451dc68
  Gustaf Ahdritz authored Feb 17, 2022
  
  8451dc68
- Adjust formatting in evoformer.py · 3a3717cc
  Gustaf Ahdritz authored Feb 17, 2022
  
  3a3717cc
- Fix bug in evoformer · 484ce867
  Gustaf Ahdritz authored Feb 17, 2022
  
  484ce867
14 Feb, 2022 1 commit
- Correct wording in README · 5eb86a78
  Gustaf Ahdritz authored Feb 14, 2022
  
  5eb86a78
13 Feb, 2022 1 commit
- Remove undefined reference · 49e21841
  Gustaf Ahdritz authored Feb 12, 2022
  
  49e21841
11 Feb, 2022 2 commits
- Improve logging · 50f72d45
  Gustaf Ahdritz authored Feb 10, 2022
  
  50f72d45
- Add missing function · a3e8ebbc
  Gustaf Ahdritz authored Feb 10, 2022
  
  a3e8ebbc
10 Feb, 2022 3 commits
- Change name of prot data cache · b9faee76
  Gustaf Ahdritz authored Feb 10, 2022
  
  b9faee76
- Correct description of mmCIF cache · 2864b7ca
  Gustaf Ahdritz authored Feb 09, 2022
  
  2864b7ca
- Add note about chain data cache script · 30f92c45
  Gustaf Ahdritz authored Feb 09, 2022
  
  30f92c45
08 Feb, 2022 5 commits
- Remove leftover if condition · c6e82f02
  Gustaf Ahdritz authored Feb 08, 2022
  
  c6e82f02
- Change config preset in training script · 60d3b198
  Gustaf Ahdritz authored Feb 08, 2022
  
  60d3b198
- Fix config presets · 16d75057
  Gustaf Ahdritz authored Feb 08, 2022
  
  16d75057
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 17015611
  Gustaf Ahdritz authored Feb 08, 2022
  
  17015611
- Remove unused option from config · 28a4c4d9
  Gustaf Ahdritz authored Feb 08, 2022
  
  28a4c4d9
06 Feb, 2022 3 commits
- Remove buggy DeepSpeed LR scheduler · 32c137e2
  Gustaf Ahdritz authored Feb 06, 2022
  
  32c137e2
- Add checkpointing to README sample command · 01367e36
  Gustaf Ahdritz authored Feb 06, 2022
  
  01367e36
- Update training script · fbec92cb
  Gustaf Ahdritz authored Feb 06, 2022
  
  fbec92cb
05 Feb, 2022 2 commits
- Fix bugs in chain data cache script · 70362e4b
  Gustaf Ahdritz authored Feb 05, 2022
  
  70362e4b
- Add chain data cache generator · 3b82ddb7
  Gustaf Ahdritz authored Feb 04, 2022
  
  3b82ddb7
04 Feb, 2022 15 commits
- Revert changes to mmcif cache gen script · a46f1b12
  Gustaf Ahdritz authored Feb 04, 2022
  
  a46f1b12
- Finish updating license info · 7f9f5326
  Gustaf Ahdritz authored Feb 04, 2022
  
  7f9f5326
- Update param license in notebook · 3bfe6f99
  Gustaf Ahdritz authored Feb 04, 2022
  
  3bfe6f99
- Un-comment lines in alignment script · 7f3a48ee
  Gustaf Ahdritz authored Feb 04, 2022
  
  7f3a48ee
- Fix bug in cache script · 84f45ee1
  Gustaf Ahdritz authored Feb 04, 2022
  
  84f45ee1
- Restore cache generation script · 54deee17
  Gustaf Ahdritz authored Feb 04, 2022
  
  54deee17
- Fix notebook · 9a0c9e1c
  Gustaf Ahdritz authored Feb 04, 2022
  
  9a0c9e1c
- Fix tense · 7f86e7cb
  Gustaf Ahdritz authored Feb 04, 2022
  
  7f86e7cb
- Reduce verbosity · 515cb731
  Gustaf Ahdritz authored Feb 03, 2022
  
  515cb731
- Update commands in README · a48e22ea
  Gustaf Ahdritz authored Feb 03, 2022
  
  a48e22ea
- Add GPU relaxation · 721e43be
  Gustaf Ahdritz authored Feb 03, 2022
  
  721e43be
- Improve loss documentation · fe98aa32
  Gustaf Ahdritz authored Feb 03, 2022
  
  fe98aa32
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 286b7f05
  Gustaf Ahdritz authored Feb 03, 2022
  
  286b7f05
- Remove duplicate code · cdaaceda
  Gustaf Ahdritz authored Feb 03, 2022
  
  cdaaceda
- Disable internal extra MSA chunking during inference · c7f26b40
  Gustaf Ahdritz authored Feb 03, 2022
  
  c7f26b40
03 Feb, 2022 4 commits
- Remove alignment index · 3279b28d
  Gustaf Ahdritz authored Feb 03, 2022
  
  3279b28d
- Remove redundant checkpoint · 55bf27d4
  Gustaf Ahdritz authored Feb 03, 2022
  
  55bf27d4
- Merge pull request #76 from aqlaboratory/chunking_experiment_rebased · cfd0fc6e
  Gustaf Ahdritz authored Feb 03, 2022
  
  cfd0fc6e
- Remove more undefined references · 2726892a
  Gustaf Ahdritz authored Feb 03, 2022
  
  2726892a