Commits · a51b08cd9b0d94377e2ed4e7177aec94729d749f · OpenDAS / OpenFold

06 May, 2024 2 commits
- initial compatibility changes for upgrading multimer · a51b08cd
  Jennifer authored Jan 12, 2024
  
  a51b08cd
- adds mpi4py to environment and removes stray print statements from test · af457b95
  Jennifer Wei authored May 06, 2024
  
  af457b95
02 May, 2024 3 commits
- Updates environment.yml to unpin wandb version · 9b6c1dac
  Jennifer authored May 02, 2024
  
  9b6c1dac
- updates Bio.PDBData call and environment.yml · 02cb7711
  Jennifer authored Apr 22, 2024
  
  02cb7711
- changes required for pytorch2 · 60fbe539
  Jennifer Wei authored Apr 12, 2024
  
  60fbe539
30 Apr, 2024 1 commit
- Adds mkl version to environment.yml · 64631f0c
  Jennifer authored Apr 30, 2024
  
  64631f0c
12 Apr, 2024 1 commit
- changes required for pytorch2 · ce000c60
  Jennifer Wei authored Apr 12, 2024
  
  ce000c60
06 Dec, 2023 1 commit
- Updated DeepSpeed version, added inplace_safe for template offloading · cdd97841
  Christina Floristean authored Dec 06, 2023
  
  cdd97841
10 Nov, 2023 1 commit
- Return to regular kernel usage · 54d414e4
  Christina Floristean authored Nov 10, 2023
  
  54d414e4
02 Nov, 2023 1 commit
- Change order of numpy and pandas dependencies to keep numpy version. · f95d9a57
  jnwei authored Nov 02, 2023
  
  f95d9a57
27 Oct, 2023 1 commit
- Adds libgcc and pytorch::pytorch to environment.yml · 13f0f6fe
  Jennifer Wei authored Oct 27, 2023
  
  13f0f6fe
24 Oct, 2023 3 commits
- update flash-attention-version · a5a86d43
  jnwei authored Oct 24, 2023
  
  a5a86d43
- Add git to environment.yml · f06657fe
  Jennifer Wei authored Oct 24, 2023
  
  f06657fe
- Test flash-attention v0.2.1 on docker CI · a90da395
  jnwei authored Oct 24, 2023
  
  a90da395
23 Oct, 2023 3 commits
- Use conventional "short hash" style · 7666c802
  Matthew W. Thompson authored Oct 23, 2023
  
  7666c802
- Update name to `pytorch-lightning` · 58210350
  Matthew W. Thompson authored Oct 23, 2023
  
  58210350
- Update environment YAML · 6bf5c8ce
  Matthew W. Thompson authored Oct 23, 2023
  
  6bf5c8ce
20 Oct, 2023 1 commit

- Moves python packages to conda installation · fcba3358

Jennifer Wei authored Oct 20, 2023

  instead of pip
- Adds helper line to automatically prepend conda library to
  $LD_LIBRARY_PATH

fcba3358

17 Oct, 2023 1 commit
- update installation scripts. · 4fde713c
  Jennifer Wei authored Oct 17, 2023
  
  4fde713c
16 Oct, 2023 3 commits
- Removed references to jax · def329b8
  Christina Floristean authored Oct 16, 2023
  
  def329b8
- Refactoring multimer data pipeline and permutation alignment. · 0cf1541c
  Christina Floristean authored Oct 16, 2023
  
  0cf1541c
- Removes conda installation from installation script. · 7922bd57
  Jennifer Wei authored Oct 16, 2023
  
  7922bd57
18 Sep, 2023 1 commit
- Update to deepspeed main repo, final changes to tests · 710088d9
  Christina Floristean authored Sep 18, 2023
  
  710088d9
14 Sep, 2023 1 commit
- Fix seq min length issue in kernel test · a8d896fd
  Christina Floristean authored Sep 14, 2023
  
  a8d896fd
13 Sep, 2023 1 commit
- Clean up DS kernel integration and test, add cutlass to installation procedure · 2bf18520
  Christina Floristean authored Sep 13, 2023
  
  2bf18520
08 Sep, 2023 1 commit
- Convert back to AF2 scheduler/optimizer in deepspeed config · a6703606
  Christina Floristean authored Sep 08, 2023
  
  a6703606
26 Apr, 2023 1 commit
- Advance python version to 3.9 to build docker in Ubuntu Lunar Lobster · 942f4d6e
  Vaclav Hanzl authored Apr 26, 2023
  
  942f4d6e
20 Feb, 2023 1 commit
- WIP: towards modelcif writing, conda · 7bc13cfc
  Jose Duarte authored Feb 20, 2023
  
  7bc13cfc
31 Jul, 2022 1 commit
- Update deepspeed version to 0.5.10 · 60aad360
  Niccolò Zanichelli authored Jul 31, 2022
```
Fixes https://github.com/aqlaboratory/openfold/issues/184.
```
  60aad360
14 Jul, 2022 1 commit
- Make FlashAttention installation optional · d07ae9c4
  Gustaf Ahdritz authored Jul 14, 2022
  
  d07ae9c4
11 Jul, 2022 2 commits
- Roll back FlashAttention · 10b6afd6
  Gustaf Ahdritz authored Jul 11, 2022
  
  10b6afd6
- Remove redundant(?) cudatoolkit-dev installation · 7a5b5835
  Gustaf Ahdritz authored Jul 11, 2022
  
  7a5b5835
10 Jul, 2022 2 commits
- Make cudatoolkit version more specific · a890b4ad
  Gustaf Ahdritz authored Jul 10, 2022
  
  a890b4ad
- Update cudatoolkit version · 5cf99876
  Gustaf Ahdritz authored Jul 10, 2022
  
  5cf99876
08 Jul, 2022 1 commit
- Update requirements · a35a41ee
  Gustaf Ahdritz authored Jul 08, 2022
  
  a35a41ee
28 Apr, 2022 3 commits
- Dockerfile CUDA compilation round 10 · de60b410
  Gustaf Ahdritz authored Apr 27, 2022
  
  de60b410
- Dockerfile CUDA compilation round 9 · 3f6b73b3
  Gustaf Ahdritz authored Apr 27, 2022
  
  3f6b73b3
- Dockerfile CUDA compilation round 8 · f2409669
  Gustaf Ahdritz authored Apr 27, 2022
  
  f2409669
26 Apr, 2022 1 commit
- Update environment.yml · e1796607
  Gustaf Ahdritz authored Apr 26, 2022
  
  e1796607
21 Apr, 2022 1 commit
- fixing dockerfile and small bug in run_pretrained_openfold.py · 102c446f
  Sam DeLuca authored Apr 21, 2022
  
  102c446f