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OpenDAS
OpenFold
Commits
13f0f6fe
Commit
13f0f6fe
authored
Oct 27, 2023
by
Jennifer Wei
Browse files
Adds libgcc and pytorch::pytorch to environment.yml
parent
a5c69a79
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environment.yml
environment.yml
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environment.yml
View file @
13f0f6fe
name
:
openfold
_
venv
name
:
openfold
-
venv
channels
:
-
conda-forge
-
bioconda
-
pytorch
dependencies
:
-
python=3.9
-
libgcc=7.2
-
setuptools=59.5.0
-
pip
-
openmm=7.7
-
pdbfixer
-
cudatoolkit==11.3.*
-
pytorch=1.12.*
-
pytorch-lightning==1.5.10
-
biopython==1.79
-
numpy==1.21
...
...
@@ -27,8 +28,9 @@ dependencies:
-
bioconda::hmmer==3.3.2
-
bioconda::hhsuite==3.3.0
-
bioconda::kalign2==2.04
-
pytorch::pytorch=1.12.*
-
pip
:
-
deepspeed==0.5.10
-
dm-tree==0.1.6
-
git+https://github.com/NVIDIA/dllogger.git
-
git+https://github.com/Dao-AILab/flash-attention.git@
v0.2.1
-
git+https://github.com/Dao-AILab/flash-attention.git@
5b838a8
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