Commits · a44bbebbfa4dbb8b228e0c8d77338173cf78d699 · OpenDAS / OpenFold

"vscode:/vscode.git/clone" did not exist on "baf15f8f6af1649e0ce83e3589fca5e04cf705bd"

02 Aug, 2022 7 commits
- Add argument check to CAMEO script · a44bbebb
  Gustaf Ahdritz authored Aug 01, 2022
  
  a44bbebb
- Add CAMEO link · b18026fd
  Gustaf Ahdritz authored Aug 01, 2022
  
  b18026fd
- Remove assumption that checkpoint is a directory · 581d64f2
  Gustaf Ahdritz authored Aug 01, 2022
  
  581d64f2
- Improve validation set instructions · 5fecb921
  Gustaf Ahdritz authored Aug 01, 2022
  
  5fecb921
- Fix argparse bug · 904de71f
  Gustaf Ahdritz authored Aug 01, 2022
  
  904de71f
- Merge pull request #185 from NZ99/patch-1 · b0313688
  Gustaf Ahdritz authored Aug 01, 2022
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Update deepspeed version to 0.5.10
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  b0313688
- Improve validation download script · 3ced7cf2
  Gustaf Ahdritz authored Aug 01, 2022
  
  3ced7cf2
31 Jul, 2022 1 commit
- Update deepspeed version to 0.5.10 · 60aad360
  Niccolò Zanichelli authored Jul 31, 2022
```
Fixes https://github.com/aqlaboratory/openfold/issues/184.
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  60aad360
30 Jul, 2022 2 commits
- Speed up dataset filtering · 200d9517
  Gustaf Ahdritz authored Jul 29, 2022
  
  200d9517
- Fix sample training command · d96f27b1
  Gustaf Ahdritz authored Jul 29, 2022
  
  d96f27b1
29 Jul, 2022 5 commits
- Fix sample training command · ce2e1f29
  Gustaf Ahdritz authored Jul 29, 2022
  
  ce2e1f29
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · f3087e31
  Gustaf Ahdritz authored Jul 29, 2022
  
  f3087e31
- Reenable chunk size tuning · a89d43e4
  Gustaf Ahdritz authored Jul 29, 2022
  
  a89d43e4
- Fix config setting bug in inference script · ecd5a7ed
  Gustaf Ahdritz authored Jul 29, 2022
  
  ecd5a7ed
- Add contiguous() call just in case · 86613a95
  Gustaf Ahdritz authored Jul 29, 2022
  
  86613a95
28 Jul, 2022 5 commits
- Add use_low_memory_attention parameters · 03518fd1
  Gustaf Ahdritz authored Jul 28, 2022
  
  03518fd1
- Merge pull request #178 from epenning/fix_offload_flash · 984370ce
  Gustaf Ahdritz authored Jul 28, 2022
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Fix propagation of use_flash for offloaded inference
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  984370ce
- Fix generator bug · 965961af
  Gustaf Ahdritz authored Jul 28, 2022
  
  965961af
- Propagate use_flash in offloaded inference · 54457695
  epenning authored Jul 28, 2022
  
  54457695
- Update GDrive params · 3de3bcb9
  Gustaf Ahdritz authored Jul 28, 2022
  
  3de3bcb9
22 Jul, 2022 2 commits
- Fix filtering logic · 0d2dd5d0
  Gustaf Ahdritz authored Jul 22, 2022
  
  0d2dd5d0
- Rename mapping parameter · 3246e8ca
  Gustaf Ahdritz authored Jul 22, 2022
  
  3246e8ca
21 Jul, 2022 1 commit
- Add note about parameter/preset compatibility · b8034138
  Gustaf Ahdritz authored Jul 21, 2022
  
  b8034138
20 Jul, 2022 4 commits
- Reword README · 4deed417
  Gustaf Ahdritz authored Jul 20, 2022
  
  4deed417
- Change seeding · 8184691b
  Gustaf Ahdritz authored Jul 20, 2022
  
  8184691b
- Undo accidental training script change · 47fccce1
  Gustaf Ahdritz authored Jul 20, 2022
  
  47fccce1
- Fix pLDDT bug · 4358096c
  Gustaf Ahdritz authored Jul 20, 2022
  
  4358096c
19 Jul, 2022 13 commits
- Address template edge case · 236c6865
  Gustaf Ahdritz authored Jul 19, 2022
  
  236c6865
- Rename pLDDT loss · b9eede45
  Gustaf Ahdritz authored Jul 19, 2022
  
  b9eede45
- Fix Colab title · a83fcc01
  Gustaf Ahdritz authored Jul 19, 2022
  
  a83fcc01
- Revamp Colab · bbb9c9fd
  Gustaf Ahdritz authored Jul 19, 2022
  
  bbb9c9fd
- Merge pull request #171 from josemduarte/download-uniref-fix · dc4d04c8
  Gustaf Ahdritz authored Jul 19, 2022
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Fixing issue in download_uniref90.sh
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  dc4d04c8
- Add missing import · f4b1347b
  Gustaf Ahdritz authored Jul 19, 2022
  
  f4b1347b
- Make DeepSpeed optional · 9b861808
  Gustaf Ahdritz authored Jul 19, 2022
  
  9b861808
- Fixing issue in gunzipping · 55cce52e
  Jose Duarte authored Jul 19, 2022
  
  55cce52e
- Undo last commit · 15b75e49
  Gustaf Ahdritz authored Jul 19, 2022
  
  15b75e49
- Fix imports · f0cce574
  Gustaf Ahdritz authored Jul 19, 2022
  
  f0cce574
- Make Biopython optional · c269978a
  Gustaf Ahdritz authored Jul 19, 2022
  
  c269978a
- Remove pip requirements from setup.py · 68a48604
  Gustaf Ahdritz authored Jul 19, 2022
  
  68a48604
- Merge pull request #163 from bayer-science-for-a-better-life/modernize-mmseqs · 99c080f8
  Gustaf Ahdritz authored Jul 19, 2022
```
Support openmm >= 7.6
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  99c080f8