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OpenDAS
OpenFold
Commits
b8034138
Unverified
Commit
b8034138
authored
Jul 21, 2022
by
Gustaf Ahdritz
Committed by
GitHub
Jul 21, 2022
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Add note about parameter/preset compatibility
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b8034138
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@@ -159,8 +159,9 @@ respectively. For a breakdown of the differences between the different parameter
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@@ -159,8 +159,9 @@ respectively. For a breakdown of the differences between the different parameter
files, see the README downloaded to
`openfold/resources/openfold_params/`
. Since
files, see the README downloaded to
`openfold/resources/openfold_params/`
. Since
OpenFold was trained under a newer training schedule than the one from which the
OpenFold was trained under a newer training schedule than the one from which the
`model_n`
config presets are derived, there is no clean correspondence between
`model_n`
config presets are derived, there is no clean correspondence between
`config_preset`
settings and OpenFold checkpoints; the only restraint is that
`*_ptm`
`config_preset`
settings and OpenFold checkpoints; the only restraints are that
checkpoints must be run with
`*_ptm`
config presets.
`*_ptm`
checkpoints must be run with
`*_ptm`
config presets and that
`_no_templ_`
checkpoints are only compatible with template-less presets (
`model_3`
and above).
Note that chunking (as defined in section 1.11.8 of the AlphaFold 2 supplement)
Note that chunking (as defined in section 1.11.8 of the AlphaFold 2 supplement)
is enabled by default in inference mode. To disable it, set
`globals.chunk_size`
is enabled by default in inference mode. To disable it, set
`globals.chunk_size`
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