Commits · 98b2c663c5366acd3e3540e3ce0fac41b307fafb · OpenDAS / OpenFold

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26 Oct, 2021 2 commits
- Add description to ProteinNet MSA script · 98b2c663
  Gustaf Ahdritz authored Oct 26, 2021
  
  98b2c663
- Add ProteinNet support to parser · b5f885d0
  Gustaf Ahdritz authored Oct 26, 2021
  
  b5f885d0
24 Oct, 2021 2 commits
- Merge pull request #1 from aqlaboratory/mpvenkatesh/changes · 94ab346e
  Gustaf Ahdritz authored Oct 24, 2021
```
minor fixes
```
  94ab346e
- minor fixes · 04fa3548
  sft-managed authored Oct 24, 2021
  
  04fa3548
23 Oct, 2021 3 commits
- Fix PDB parsing, add distillation MSA cropping · 6298a3e6
  Gustaf Ahdritz authored Oct 23, 2021
  
  6298a3e6
- Fix bug in MSA loss · 4d40ce80
  Gustaf Ahdritz authored Oct 23, 2021
  
  4d40ce80
- Add training callbacks · 4c9d372d
  Gustaf Ahdritz authored Oct 23, 2021
  
  4c9d372d
22 Oct, 2021 17 commits
- Clarify checkpointing comment · 727e68c2
  Gustaf Ahdritz authored Oct 22, 2021
  
  727e68c2
- Move note on aria2c · f706ace4
  Gustaf Ahdritz authored Oct 22, 2021
  
  f706ace4
- Add note about HH-suite installer · 17f8d7cb
  Gustaf Ahdritz authored Oct 22, 2021
  
  17f8d7cb
- Add script for installing the HH-suite · 5b9cfdaf
  Gustaf Ahdritz authored Oct 22, 2021
  
  5b9cfdaf
- Improve global seeding, clean up training script a little · 1715e3d5
  Gustaf Ahdritz authored Oct 22, 2021
  
  1715e3d5
- Delete old file · 971c41d2
  Gustaf Ahdritz authored Oct 22, 2021
  
  971c41d2
- Remove outdated comment · 4df6457a
  Gustaf Ahdritz authored Oct 22, 2021
  
  4df6457a
- Add DeepSpeed check to checkpointing function · 748a8c50
  Gustaf Ahdritz authored Oct 22, 2021
  
  748a8c50
- Add dummy dataloader, most recent version of training script · fcf9e2f8
  Gustaf Ahdritz authored Oct 22, 2021
  
  fcf9e2f8
- Fix grammar mistake · 6dc8aa7f
  Gustaf Ahdritz authored Oct 21, 2021
  
  6dc8aa7f
- Add gradient clipping to DeepSpeed config generator · 872787b9
  Gustaf Ahdritz authored Oct 21, 2021
  
  872787b9
- Add some more dependencies · ac058f54
  Gustaf Ahdritz authored Oct 21, 2021
  
  ac058f54
- Fix typo in README · 8cb569f2
  Gustaf Ahdritz authored Oct 21, 2021
  
  8cb569f2
- Reformat README again · 01ad794b
  Gustaf Ahdritz authored Oct 21, 2021
  
  01ad794b
- Reformat README · 621b3645
  Gustaf Ahdritz authored Oct 21, 2021
  
  621b3645
- Update documentation · bd0c4d48
  Gustaf Ahdritz authored Oct 21, 2021
  
  bd0c4d48
- Add Colab notebook · 2d6ef1fb
  Gustaf Ahdritz authored Oct 21, 2021
  
  2d6ef1fb
21 Oct, 2021 4 commits
- Fix another inference-time data parser bug · c58f3cd8
  Gustaf Ahdritz authored Oct 20, 2021
  
  c58f3cd8
- Fix inference-time bug in data pipeline, change config defaults · d65b76a2
  Gustaf Ahdritz authored Oct 20, 2021
  
  d65b76a2
- Fix typo · 13290527
  Gustaf Ahdritz authored Oct 20, 2021
  
  13290527
- Remove dependency on training-time feature · bf3eed6e
  Gustaf Ahdritz authored Oct 20, 2021
  
  bf3eed6e
20 Oct, 2021 7 commits
- Add warning to run script · 267b1bfd
  Gustaf Ahdritz authored Oct 20, 2021
  
  267b1bfd
- Add testing instructions to README · a3a27143
  Gustaf Ahdritz authored Oct 20, 2021
  
  a3a27143
- Move template pair stack out of single-template block (for DeepSpeed) · aea444ed
  Gustaf Ahdritz authored Oct 20, 2021
  
  aea444ed
- Remove .item() calls · 896f8935
  Gustaf Ahdritz authored Oct 20, 2021
  
  896f8935
- Update EMA · 1dcff6aa
  Gustaf Ahdritz authored Oct 19, 2021
  
  1dcff6aa
- Fix loss bug · 12aa565e
  Gustaf Ahdritz authored Oct 19, 2021
  
  12aa565e
- Bring tests up to speed · 49767099
  Gustaf Ahdritz authored Oct 19, 2021
  
  49767099
19 Oct, 2021 2 commits
- Prettyprint mmCIF cache · a6f56d16
  Gustaf Ahdritz authored Oct 19, 2021
  
  a6f56d16
- Fix typo in feature name · 5d449184
  Gustaf Ahdritz authored Oct 19, 2021
  
  5d449184
18 Oct, 2021 3 commits
- Add mmCIF cache generation script, remove verbose warnings · 23886619
  Gustaf Ahdritz authored Oct 18, 2021
  
  23886619
- Fix cropping bug · f649cccd
  Gustaf Ahdritz authored Oct 17, 2021
  
  f649cccd
- Add config change to run script · 4ab59433
  Gustaf Ahdritz authored Oct 17, 2021
  
  4ab59433