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OpenDAS
OpenFold
Commits
f706ace4
"...models/git@developer.sourcefind.cn:OpenDAS/openpcdet.git" did not exist on "02ac3e17a9aa438bdab9b566d4334bff6263374a"
Commit
f706ace4
authored
Oct 22, 2021
by
Gustaf Ahdritz
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Move note on aria2c
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17f8d7cb
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f706ace4
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@@ -27,7 +27,7 @@ Python dependencies available through `pip` are provided in `requirements.txt`.
OpenFold depends on
`openmm==7.5.1`
and
`pdbfixer`
, which are only available
via
`conda`
. For producing sequence alignments, you'll also need
`jackhmmer`
,
`kalign`
, and the
[
HH-suite
](
https://github.com/soedinglab/hh-suite
)
installed
on your system.
on your system.
Finally, some download scripts require
`aria2c`
.
For convenience, we provide a script that installs Miniconda locally, creates a
`conda`
virtual environment, installs all Python dependencies, and downloads
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@@ -63,8 +63,6 @@ To download the genetic databases used by AlphaFold/OpenFold, run:
scripts/download_all_data.sh data/
```
This script depends on
`aria2c`
.
### Inference
To run inference on a sequence using a set of DeepMind's pretrained parameters,
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