Commits · 7d23b6543fae7214a87a3eecb1621c24d34b5921 · OpenDAS / OpenFold

29 Jun, 2022 1 commit
- improving file naming in run_pretrained_openfold · 7d23b654
  Sam DeLuca authored Jun 29, 2022
  
  7d23b654
27 Jun, 2022 1 commit
- Merge remote-tracking branch 'origin/main' into improved_model_outputs · 080e37bb
  Sam DeLuca authored Jun 27, 2022
  
  080e37bb
24 Jun, 2022 7 commits
- Merge pull request #133 from CyrusBiotechnology/readme-caption · efcf80f5
  Gustaf Ahdritz authored Jun 24, 2022
```
adding a caption to the image in the readme
```
  efcf80f5
- adding a caption to the image in the readme · 2a901107
  Sam DeLuca authored Jun 24, 2022
  
  2a901107
- Restore layer_norm_m to its rightful place · a7c4159d
  Gustaf Ahdritz authored Jun 24, 2022
  
  a7c4159d
- Add note about OF->AF conversion script to README · c1c8999c
  Gustaf Ahdritz authored Jun 24, 2022
  
  c1c8999c
- Touch up OF/AF conversion script · d7367f9a
  Gustaf Ahdritz authored Jun 24, 2022
  
  d7367f9a
- Come full circle · 76599b12
  Gustaf Ahdritz authored Jun 24, 2022
  
  76599b12
- Fix formatting of install_hh_suite.sh · a35c44f5
  Gustaf Ahdritz authored Jun 23, 2022
  
  a35c44f5
23 Jun, 2022 22 commits
- Merge pull request #116 from brianloyal/main · 5d7b29d6
  Gustaf Ahdritz authored Jun 23, 2022
```
Update input processing
```
  5d7b29d6
- Merge branch 'aqlaboratory:main' into main · 9009c92a
  Brian Loyal authored Jun 23, 2022
  
  9009c92a
- Updated code to and fix bad fasta inputs · 294c04ad
  Brian Loyal authored Jun 23, 2022
  
  294c04ad
- Merge remote-tracking branch 'origin/main' into run-multiple-models · 2ada4f8d
  Sam DeLuca authored Jun 23, 2022
  
  2ada4f8d
- Fix install script · c871ccf3
  Gustaf Ahdritz authored Jun 23, 2022
  
  c871ccf3
- Fix git-lfs in Colab · c401749f
  Gustaf Ahdritz authored Jun 23, 2022
  
  c401749f
- fixing bug in jax handling · 07b522b7
  Sam DeLuca authored Jun 23, 2022
  
  07b522b7
- format · 7cf3125e
  Brian Loyal authored Jun 17, 2022
  
  7cf3125e
- Revert Dockerfile · a039e9c4
  Brian Loyal authored Jun 17, 2022
  
  a039e9c4
- Remove extra files · 7aa2460d
  Brian Loyal authored Jun 17, 2022
  
  7aa2460d
- Only use .fa files, not subfolders or other files · 435c164d
  Brian Loyal authored Jun 17, 2022
  
  435c164d
- Docker testing · 3c89c1c7
  Brian Loyal authored Jun 15, 2022
  
  3c89c1c7
- Update fasta code to account for multi-line seqs · 148afc98
  Brian Loyal authored Jun 13, 2022
  
  148afc98
- Fix another notebook bug · 8057eb84
  Gustaf Ahdritz authored Jun 23, 2022
  
  8057eb84
- Fix config default · 35482d3b
  Gustaf Ahdritz authored Jun 22, 2022
  
  35482d3b
- Fix inference script again · 3654b7f3
  Gustaf Ahdritz authored Jun 22, 2022
  
  3654b7f3
- Remove claim from README · c22d0111
  Gustaf Ahdritz authored Jun 22, 2022
  
  c22d0111
- Fix undefined reference · 04d1f005
  Gustaf Ahdritz authored Jun 22, 2022
  
  04d1f005
- Fix typo in notebook · 42a89f8c
  Gustaf Ahdritz authored Jun 22, 2022
  
  42a89f8c
- Refactor run_pretrained_openfold.py a little · 1fa6ffab
  Gustaf Ahdritz authored Jun 22, 2022
  
  1fa6ffab
- Restore sample feat file · b4b849af
  Gustaf Ahdritz authored Jun 22, 2022
  
  b4b849af
- Merge pull request #117 from CyrusBiotechnology/run-multiple-models · 89dee905
  Gustaf Ahdritz authored Jun 22, 2022
```
Use multiple models for inference
```
  89dee905
22 Jun, 2022 9 commits
- Switch source of OF parameters to HuggingFace · a48860cb
  Gustaf Ahdritz authored Jun 22, 2022
  
  a48860cb
- Touch up README · eaeb6de8
  Gustaf Ahdritz authored Jun 22, 2022
  
  eaeb6de8
- more fixes · a2ab7ab7
  Sam DeLuca authored Jun 22, 2022
  
  a2ab7ab7
- Add note about alignment format to README · 54a65ff6
  Gustaf Ahdritz authored Jun 22, 2022
  
  54a65ff6
- bugfix · ce042962
  Sam DeLuca authored Jun 22, 2022
  
  ce042962
- Merge remote-tracking branch 'cyrus/main' into run-multiple-models · 3ad85a19
  Sam DeLuca authored Jun 22, 2022
  
  3ad85a19
- Fix another PDB parsing bug · 6da2cdaf
  Gustaf Ahdritz authored Jun 22, 2022
  
  6da2cdaf
- Fix PDB parsing bug · 0f54f679
  Gustaf Ahdritz authored Jun 22, 2022
  
  0f54f679
- Fix even more undefined references · 99cdb062
  Gustaf Ahdritz authored Jun 22, 2022
  
  99cdb062