Commits · 6c89015d72b541ff5a4c386e522b129f0db59801 · OpenDAS / OpenFold

03 Aug, 2022 3 commits
- Remove error in new CC function · 6c89015d
  Gustaf Ahdritz authored Aug 03, 2022
  
  6c89015d
- Fix typo · 1c64c791
  Gustaf Ahdritz authored Aug 03, 2022
  
  1c64c791
- Fix kernel installation bug · 20fbe840
  Gustaf Ahdritz authored Aug 03, 2022
  
  20fbe840
02 Aug, 2022 3 commits
- Fixes errors when processing .pdb files · d7d95e94
  Niccolò Zanichelli authored Aug 02, 2022
```
Fixes #187.
```
  d7d95e94
- Add argument check to CAMEO script · a44bbebb
  Gustaf Ahdritz authored Aug 01, 2022
  
  a44bbebb
- Improve validation download script · 3ced7cf2
  Gustaf Ahdritz authored Aug 01, 2022
  
  3ced7cf2
29 Jul, 2022 1 commit
- fix incorrect learning rate warm-up after restarting from ckpt · a7274ef0
  Zhang690683220 authored Jul 29, 2022
  
  a7274ef0
28 Jul, 2022 1 commit
- Update GDrive params · 3de3bcb9
  Gustaf Ahdritz authored Jul 28, 2022
  
  3de3bcb9
19 Jul, 2022 3 commits
- Fixing issue in gunzipping · 55cce52e
  Jose Duarte authored Jul 19, 2022
  
  55cce52e
- Add region to aws command · def0727d
  Gustaf Ahdritz authored Jul 19, 2022
  
  def0727d
- Update OF params · 0933cad1
  Gustaf Ahdritz authored Jul 19, 2022
  
  0933cad1
18 Jul, 2022 1 commit
- Fixing issue in gunzipping · 204d243b
  Jose Duarte authored Jul 18, 2022
  
  204d243b
14 Jul, 2022 2 commits
- Make FlashAttention installation optional · d07ae9c4
  Gustaf Ahdritz authored Jul 14, 2022
  
  d07ae9c4
- Restore missing shebang · 1c279f90
  Gustaf Ahdritz authored Jul 14, 2022
  
  1c279f90
07 Jul, 2022 1 commit
- Add CAMEO download script · db43f4ec
  Gustaf Ahdritz authored Jul 07, 2022
  
  db43f4ec
27 Jun, 2022 3 commits
- Add alignment DB scripts · 728f99fc
  Gustaf Ahdritz authored Jun 27, 2022
  
  728f99fc
- Fix bug in prep_mmseqs_dbs.sh · 4e730269
  Gustaf Ahdritz authored Jun 27, 2022
  
  4e730269
- Fix bug in download_data.sh · abc1ceb0
  Gustaf Ahdritz authored Jun 27, 2022
  
  abc1ceb0
24 Jun, 2022 3 commits
- Touch up OF/AF conversion script · d7367f9a
  Gustaf Ahdritz authored Jun 24, 2022
  
  d7367f9a
- Come full circle · 76599b12
  Gustaf Ahdritz authored Jun 24, 2022
  
  76599b12
- Fix formatting of install_hh_suite.sh · a35c44f5
  Gustaf Ahdritz authored Jun 23, 2022
  
  a35c44f5
23 Jun, 2022 1 commit
- Fix install script · c871ccf3
  Gustaf Ahdritz authored Jun 23, 2022
  
  c871ccf3
22 Jun, 2022 2 commits
- Switch source of OF parameters to HuggingFace · a48860cb
  Gustaf Ahdritz authored Jun 22, 2022
  
  a48860cb
- Fix parameter download script · 07f98811
  Gustaf Ahdritz authored Jun 22, 2022
  
  07f98811
21 Jun, 2022 3 commits
- Add SLURM script acknowledgement · 4e934f74
  Gustaf Ahdritz authored Jun 21, 2022
  
  4e934f74
- Add SLURM alignment script · 4a3c3924
  Gustaf Ahdritz authored Jun 21, 2022
  
  4a3c3924
- Update file ID in OpenFold parameter download script · 5fbb0d0d
  Gustaf Ahdritz authored Jun 21, 2022
  
  5fbb0d0d
17 Jun, 2022 3 commits
- Move parameter downloads · f8f74006
  Gustaf Ahdritz authored Jun 17, 2022
  
  f8f74006
- Update link in OpenFold parameter download script · 9d09bdb8
  Gustaf Ahdritz authored Jun 17, 2022
  
  9d09bdb8
- Add OpenFold parameter download script · 233704c5
  Gustaf Ahdritz authored Jun 17, 2022
  
  233704c5
10 Jun, 2022 1 commit
- Vastly lower peak inference memory usage · 6e66b218
  Gustaf Ahdritz authored Jun 10, 2022
  
  6e66b218
30 Mar, 2022 1 commit
- Undo DeepSpeed config change · f362ebff
  Gustaf Ahdritz authored Mar 29, 2022
  
  f362ebff
29 Mar, 2022 1 commit
- Fix DeepSpeed config builder · 9f558178
  Gustaf Ahdritz authored Mar 29, 2022
  
  9f558178
14 Mar, 2022 1 commit
- Fix bug in mmCIF cache script · c83c42e8
  Gustaf Ahdritz authored Mar 14, 2022
  
  c83c42e8
22 Feb, 2022 3 commits
- One last adjustment to generate_chain_data_cache.py · 950b02f0
  Gustaf Ahdritz authored Feb 22, 2022
  
  950b02f0
- Adjust default behavior of generate_chain_data_cache.py · 39860f93
  Gustaf Ahdritz authored Feb 22, 2022
  
  39860f93
- Fix chain data cache script bug, improve logging · 4c7c30b1
  Gustaf Ahdritz authored Feb 22, 2022
  
  4c7c30b1
05 Feb, 2022 2 commits
- Fix bugs in chain data cache script · 70362e4b
  Gustaf Ahdritz authored Feb 05, 2022
  
  70362e4b
- Add chain data cache generator · 3b82ddb7
  Gustaf Ahdritz authored Feb 04, 2022
  
  3b82ddb7
04 Feb, 2022 1 commit
- Revert changes to mmcif cache gen script · a46f1b12
  Gustaf Ahdritz authored Feb 04, 2022
  
  a46f1b12