Commits · 3bec3e9b2d1e8bdb83887899102eff7d42dc2ba9 · OpenDAS / OpenFold

13 May, 2024 4 commits
- Update test_permutation.py · 5221ed47
  Jennifer Wei authored May 11, 2024
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Fixed a small typo in permutation unit test docstring
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  5221ed47
- Update tests and comments · ad414ec9
  Dingquan Yu authored May 10, 2024
  
  ad414ec9
- remove unnecessary lines · b5427018
  Geoffrey Yu authored Feb 15, 2024
  
  b5427018
- fixed bugs in unittests for multi-chain permutation. now working on extra subtests · 54ec5c4c
  Geoffrey Yu authored Feb 15, 2024
  
  54ec5c4c
06 May, 2024 2 commits
- remove test print statements · 76fb7ce6
  Jennifer Wei authored May 06, 2024
  
  76fb7ce6
- adds mpi4py to environment and removes stray print statements from test · af457b95
  Jennifer Wei authored May 06, 2024
  
  af457b95
06 Feb, 2024 1 commit
- debugging for permutation test · bf8788c7
  Jennifer authored Feb 06, 2024
  
  bf8788c7
02 Nov, 2023 1 commit
- Unit test fixes for when AF2 is not installed · 5fcd6ed2
  Christina Floristean authored Nov 02, 2023
  
  5fcd6ed2
21 Sep, 2023 1 commit
- fixed error with anchor selections; updated permutation unittest · f3c1af45
  Geoffrey Yu authored Sep 21, 2023
  
  f3c1af45
03 Sep, 2023 2 commits
- added test3 to test if permutated tensors end up as expected · cec5a426
  Geoffrey Yu authored Sep 03, 2023
  
  cec5a426
- update permutation unittest · c5f16efc
  Geoffrey Yu authored Sep 03, 2023
  
  c5f16efc
04 Aug, 2023 2 commits
- remove unfinished test file · e84df271
  Geoffrey Yu authored Aug 04, 2023
  
  e84df271
- fixed TypeError: enabled must be a bool (got Tensor) when training multimer · d7f3d622
  Geoffrey Yu authored Aug 04, 2023
  
  d7f3d622
03 Aug, 2023 1 commit
- removed old data and script for permutation unittest. now working on the new permutation unittest · 139ea9a6
  Geoffrey Yu authored Aug 03, 2023
  
  139ea9a6
06 Jul, 2023 1 commit
- modify imports and header · 8f08fbb7
  Geoffrey Yu authored Jul 06, 2023
  
  8f08fbb7
30 Jun, 2023 3 commits
- change it back to unittest testunit · 7e969e48
  Geoffrey Yu authored Jun 30, 2023
  
  7e969e48
- update test codes so that it generates correct structure of input data · 1e268fd5
  Geoffrey Yu authored Jun 30, 2023
  
  1e268fd5
- fixed the input data generation so that true_msa and bert_mask shapes are... · 1b4fc115
  Geoffrey Yu authored Jun 30, 2023
```
fixed the input data generation so that true_msa and bert_mask shapes are correct otherwise crashes in loss calculations
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  1b4fc115
29 Jun, 2023 2 commits
- updated the loss config so that the masked msa dim is 22 instead of 23 · 9ebb1e1a
  Geoffrey Yu authored Jun 29, 2023
  
  9ebb1e1a
- update test code · c8a3f35e
  Geoffrey Yu authored Jun 29, 2023
  
  c8a3f35e
28 Jun, 2023 1 commit
- added batch_size dimension · c69053e5
  Geoffrey Yu authored Jun 28, 2023
  
  c69053e5
26 Jun, 2023 1 commit
- update the test input to be A2B3 · 5621ac05
  Geoffrey Yu authored Jun 26, 2023
  
  5621ac05
22 Jun, 2023 3 commits
- update test codes · ab659c39
  Geoffrey Yu authored Jun 22, 2023
  
  ab659c39
- now used the new way of selecting anchors · a0f8a057
  Geoffrey Yu authored Jun 22, 2023
  
  a0f8a057
- remove recycling dimentions · c6ac105d
  Geoffrey Yu authored Jun 22, 2023
  
  c6ac105d
21 Jun, 2023 1 commit
- finished working on selecting best anchors. now start working on get_optimal_transform · e3e8a681
  Geoffrey Yu authored Jun 21, 2023
  
  e3e8a681
20 Jun, 2023 1 commit
- start working on permutation · 1008f61d
  Geoffrey Yu authored Jun 20, 2023
  
  1008f61d