Commits · 3bec3e9b2d1e8bdb83887899102eff7d42dc2ba9 · OpenDAS / OpenFold

13 May, 2024 4 commits
- Update test_permutation.py · 5221ed47
  Jennifer Wei authored May 11, 2024
```
Fixed a small typo in permutation unit test docstring
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  5221ed47
- Update tests and comments · ad414ec9
  Dingquan Yu authored May 10, 2024
  
  ad414ec9
- remove unnecessary lines · b5427018
  Geoffrey Yu authored Feb 15, 2024
  
  b5427018
- fixed bugs in unittests for multi-chain permutation. now working on extra subtests · 54ec5c4c
  Geoffrey Yu authored Feb 15, 2024
  
  54ec5c4c
06 May, 2024 4 commits
- change message for test_model.py compare · cdf60396
  Jennifer authored Apr 17, 2024
  
  cdf60396
- Additional fix for multimer deepspeed test · 4f2f069b
  Christina Floristean authored Jan 23, 2024
  
  4f2f069b
- remove test print statements · 76fb7ce6
  Jennifer Wei authored May 06, 2024
  
  76fb7ce6
- adds mpi4py to environment and removes stray print statements from test · af457b95
  Jennifer Wei authored May 06, 2024
  
  af457b95
17 Apr, 2024 1 commit
- change message for test_model.py compare · 80e63410
  Jennifer authored Apr 17, 2024
  
  80e63410
07 Feb, 2024 2 commits
- fix deepspeed_evo_attention to work in both monomer and multimer settings. · 0aa69474
  Jennifer authored Feb 07, 2024
  
  0aa69474
- create separate test configs for multimer and monomer · 204ed191
  Jennifer authored Feb 07, 2024
  
  204ed191
06 Feb, 2024 1 commit
- debugging for permutation test · bf8788c7
  Jennifer authored Feb 06, 2024
  
  bf8788c7
02 Feb, 2024 2 commits
- Adds absolute error comparison function with better messaging. · 30195c4a
  Jennifer authored Jan 24, 2024
  
  30195c4a
- update deprecated jax.numpy.DeviceArray to jax.Array · 8f8b537d
  Jennifer authored Jan 23, 2024
  
  8f8b537d
26 Jan, 2024 1 commit
- first pass changes to run with pl 2.1 · df4dfacb
  Jennifer authored Jan 24, 2024
  
  df4dfacb
24 Jan, 2024 1 commit
- Additional fix for multimer deepspeed test · e813bb53
  Christina Floristean authored Jan 23, 2024
  
  e813bb53
23 Jan, 2024 2 commits
- Additional fix for multimer deepspeed test · 40d9e7d7
  Christina Floristean authored Jan 23, 2024
  
  40d9e7d7
- update deprecated jax.numpy.DeviceArray to jax.Array · 427a6ee7
  Jennifer authored Jan 23, 2024
  
  427a6ee7
17 Jan, 2024 1 commit
- Fix deepspeed test for multimer · 9a07b7f9
  Christina Floristean authored Jan 17, 2024
  
  9a07b7f9
11 Jan, 2024 1 commit
- Change test_compare_model in deepspeed test to use mean instead of max · 39f9958b
  jnwei authored Jan 11, 2024
  
  39f9958b
15 Dec, 2023 1 commit
- Fix missing import in tests · 9d6127cb
  Christina Floristean authored Dec 15, 2023
  
  9d6127cb
08 Dec, 2023 2 commits
- Minor change to tests · 40d76358
  Christina Floristean authored Dec 08, 2023
  
  40d76358
- Minor test and README changes · 336c899a
  Christina Floristean authored Dec 08, 2023
  
  336c899a
13 Nov, 2023 2 commits
- Minor test fix · f1563999
  Christina Floristean authored Nov 13, 2023
  
  f1563999
- Update setup script and refactor qkv prep · 7fb12cf5
  Christina Floristean authored Nov 13, 2023
  
  7fb12cf5
03 Nov, 2023 1 commit
- Fix for loading old OF weights into refactored model · f65b75fe
  Christina Floristean authored Nov 03, 2023
  
  f65b75fe
02 Nov, 2023 1 commit
- Unit test fixes for when AF2 is not installed · 5fcd6ed2
  Christina Floristean authored Nov 02, 2023
  
  5fcd6ed2
10 Oct, 2023 3 commits
- Added test for no column attention Evoformer · 28334db3
  Sachin Kadyan authored Sep 18, 2023
  
  28334db3
- Added sequence embedding mode test for `model`. · a7c0d0d1
  Sachin Kadyan authored Sep 18, 2023
  
  a7c0d0d1
- Added test for PreembeddingEmbedder · 777d738a
  Sachin Kadyan authored Sep 17, 2023
  
  777d738a
06 Oct, 2023 1 commit
- Added test for backward pass · f545323c
  Christina Floristean authored Oct 06, 2023
  
  f545323c
05 Oct, 2023 1 commit
- Added kernel to template pair stack and updated tests · a3de9cb9
  Christina Floristean authored Oct 05, 2023
  
  a3de9cb9
04 Oct, 2023 1 commit
- Remove scale when using ds kernel · a0985761
  Christina Floristean authored Oct 03, 2023
  
  a0985761
21 Sep, 2023 1 commit
- fixed error with anchor selections; updated permutation unittest · f3c1af45
  Geoffrey Yu authored Sep 21, 2023
  
  f3c1af45
20 Sep, 2023 2 commits
- Adds cuda wrapper to pytorch vectors to fix TestModel.test_dry_run · 8baae516
  Jennifer Wei authored Sep 20, 2023
  
  8baae516
- Correct unit tests to run attention functions instead of Attention module in... · 6ebcd8b4
  Christina Floristean authored Sep 20, 2023
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Correct unit tests to run attention functions instead of Attention module in order to avoid 'final' init on outputs
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  6ebcd8b4
18 Sep, 2023 2 commits
- Adds float wrapper to to vectors in TestExtraMSAStack in · 48668ca3
  Jennifer Wei authored Sep 18, 2023
```
 test_evoformer.py
```
  48668ca3
- Update to deepspeed main repo, final changes to tests · 710088d9
  Christina Floristean authored Sep 18, 2023
  
  710088d9
14 Sep, 2023 2 commits
- Fix seq min length issue in kernel test · a8d896fd
  Christina Floristean authored Sep 14, 2023
  
  a8d896fd
- Fix bug in test to enable kernel · e9898a60
  Christina Floristean authored Sep 14, 2023
  
  e9898a60