Commits · 3ad85a194c91972b4e5219cd3f80bf481ae8a463 · OpenDAS / OpenFold

22 Jun, 2022 1 commit
- Fix OPM test · c2f46ce8
  Gustaf Ahdritz authored Jun 22, 2022
  
  c2f46ce8
21 Jun, 2022 1 commit
- wip · fcee03aa
  Sam DeLuca authored Jun 21, 2022
  
  fcee03aa
12 Jun, 2022 1 commit
- Fix unit test · e9e3fbdc
  Gustaf Ahdritz authored Jun 12, 2022
  
  e9e3fbdc
10 Jun, 2022 1 commit
- Vastly lower peak inference memory usage · 6e66b218
  Gustaf Ahdritz authored Jun 10, 2022
  
  6e66b218
13 May, 2022 1 commit
- Improve ease of use of LMA · 722a5e01
  Gustaf Ahdritz authored May 12, 2022
  
  722a5e01
26 Apr, 2022 2 commits
- Add type check to attention kernel · 50078a62
  Gustaf Ahdritz authored Apr 26, 2022
  
  50078a62
- Add memory-efficient attention kernels · edb7d341
  Gustaf Ahdritz authored Apr 26, 2022
  
  edb7d341
15 Apr, 2022 1 commit
- Add missing pLDDT test · 8c169fb6
  Gustaf Ahdritz authored Apr 15, 2022
  
  8c169fb6
14 Apr, 2022 1 commit
- Fix evoformer paths in some old tests · 857e9b7c
  Gustaf Ahdritz authored Apr 13, 2022
  
  857e9b7c
03 Feb, 2022 1 commit
- Fixes · 6ce8cfe3
  Gustaf Ahdritz authored Jan 18, 2022
  
  6ce8cfe3
01 Feb, 2022 1 commit
- Remove unnecessary symlink · fb02f39a
  Gustaf Ahdritz authored Feb 01, 2022
  
  fb02f39a
03 Jan, 2022 1 commit
- Overhaul transformation code for better parity w/ AlphaFold · e3daf724
  Gustaf Ahdritz authored Jan 03, 2022
  
  e3daf724
31 Dec, 2021 4 commits
- Add data pipeline test · 14cce39a
  Gustaf Ahdritz authored Dec 30, 2021
  
  14cce39a
- Change name of test data directory · 96809433
  Gustaf Ahdritz authored Dec 30, 2021
  
  96809433
- Add sample feature dict · 079baeb7
  Gustaf Ahdritz authored Dec 30, 2021
  
  079baeb7
- Add more sample data · 85d39c80
  Gustaf Ahdritz authored Dec 30, 2021
  
  85d39c80
30 Dec, 2021 1 commit
- Fix bugs in data unit tests · dfdd722c
  Gustaf Ahdritz authored Dec 30, 2021
  
  dfdd722c
22 Dec, 2021 11 commits
- Added test for make_atom14_masks · e1c7c9e7
  Sachin Kadyan authored Dec 21, 2021
  
  e1c7c9e7
- Added test for crop_templates · f33faf84
  Sachin Kadyan authored Dec 21, 2021
  
  f33faf84
- Added test for make_msa_feat · b8e597b0
  Sachin Kadyan authored Dec 21, 2021
  
  b8e597b0
- Added test for make_masked_msa · cdc28a07
  Sachin Kadyan authored Dec 21, 2021
  
  cdc28a07
- Added test for make_hhbits_profile · e683dce3
  Sachin Kadyan authored Dec 21, 2021
  
  e683dce3
- Added test for make_msa_mask · a3b5c162
  Sachin Kadyan authored Dec 21, 2021
  
  a3b5c162
- Added test for nearest_neighbor_clusters · 974fe5a9
  Sachin Kadyan authored Dec 21, 2021
  
  974fe5a9
- Added test for delete_extra_msa · 734ce915
  Sachin Kadyan authored Dec 21, 2021
  
  734ce915
- Added test for crop_extra_msa · 09564595
  Sachin Kadyan authored Dec 21, 2021
  
  09564595
- Added test for sample_msa · 925d56f8
  Sachin Kadyan authored Dec 21, 2021
  
  925d56f8
- Added tests for randomly_replace_msa_with_unknown · 011a6526
  Sachin Kadyan authored Dec 21, 2021
  
  011a6526
21 Dec, 2021 7 commits
- Fixed filepath for the features.pkl pickle file. · cad8de7e
  Sachin Kadyan authored Dec 21, 2021
  
  cad8de7e
- Added tests for squeeze_features. · 8923e536
  Sachin Kadyan authored Dec 21, 2021
  
  8923e536
- Added a pickle file of protein features, for use during tests. · 9e4fb16f
  Sachin Kadyan authored Dec 21, 2021
  
  9e4fb16f
- Added test for correct_msa_restypes · 10fc9ec0
  Sachin Kadyan authored Dec 21, 2021
  
  10fc9ec0
- Added test for fix_templates_aatype · a9c1715b
  Sachin Kadyan authored Dec 21, 2021
  
  a9c1715b
- Added test for make_all_atom_aatype · 02bf2e83
  Sachin Kadyan authored Dec 21, 2021
  
  02bf2e83
- Added flag in protein to indicate if protein comes from distillation dataset. · bc7864b1
  Sachin Kadyan authored Dec 21, 2021
  
  bc7864b1
17 Dec, 2021 1 commit
- Add low-memory attention (still needs to be incorporated) · 96709588
  Gustaf Ahdritz authored Dec 17, 2021
  
  96709588
11 Dec, 2021 2 commits
- Make triangular attention test even more sensitive · 6c5cd945
  Gustaf Ahdritz authored Dec 10, 2021
  
  6c5cd945
- Make triangle attention test more sensitive · 80f968fe
  Gustaf Ahdritz authored Dec 10, 2021
  
  80f968fe
10 Dec, 2021 1 commit
- Added tests for the data_transforms · f9e04aa0
  Sachin Kadyan authored Dec 10, 2021
  
  f9e04aa0
03 Dec, 2021 1 commit
- Add flat chunk slicing · f707a9ea
  Gustaf Ahdritz authored Dec 02, 2021
  
  f707a9ea