Commits · 3ad85a194c91972b4e5219cd3f80bf481ae8a463 · OpenDAS / OpenFold

22 Jun, 2022 19 commits
- Merge remote-tracking branch 'cyrus/main' into run-multiple-models · 3ad85a19
  Sam DeLuca authored Jun 22, 2022
  
  3ad85a19
- Fix another PDB parsing bug · 6da2cdaf
  Gustaf Ahdritz authored Jun 22, 2022
  
  6da2cdaf
- Fix PDB parsing bug · 0f54f679
  Gustaf Ahdritz authored Jun 22, 2022
  
  0f54f679
- Fix even more undefined references · 99cdb062
  Gustaf Ahdritz authored Jun 22, 2022
  
  99cdb062
- Fix undefined reference · b1e4dc52
  Gustaf Ahdritz authored Jun 22, 2022
  
  b1e4dc52
- Fix README punctuation · 23577a99
  Gustaf Ahdritz authored Jun 22, 2022
  
  23577a99
- Fix RODA link · 9861adcb
  Gustaf Ahdritz authored Jun 22, 2022
  
  9861adcb
- Correct description of database · e218af33
  Gustaf Ahdritz authored Jun 22, 2022
  
  e218af33
- Fix README markdown · 53e90683
  Gustaf Ahdritz authored Jun 22, 2022
  
  53e90683
- Make the README punchier · 9afb13a8
  Gustaf Ahdritz authored Jun 22, 2022
  
  9afb13a8
- Fix undefined reference · b3f8a5db
  Gustaf Ahdritz authored Jun 22, 2022
  
  b3f8a5db
- Tweak README · d59b06b4
  Gustaf Ahdritz authored Jun 22, 2022
  
  d59b06b4
- Fix OPM test · c2f46ce8
  Gustaf Ahdritz authored Jun 22, 2022
  
  c2f46ce8
- Fix parameter download script · 07f98811
  Gustaf Ahdritz authored Jun 22, 2022
  
  07f98811
- Fix OpenFold-Gap relaxation · 1f2eb733
  Gustaf Ahdritz authored Jun 22, 2022
  
  1f2eb733
- Finish adding OpenFold-Gap relaxation · 8532e80c
  Gustaf Ahdritz authored Jun 22, 2022
  
  8532e80c
- Update Colab · 7a3a2ed3
  Gustaf Ahdritz authored Jun 22, 2022
  
  7a3a2ed3
- Add no-grad block · 993f926a
  Gustaf Ahdritz authored Jun 22, 2022
  
  993f926a
- Add logging to inference script · ce27a6ca
  Gustaf Ahdritz authored Jun 21, 2022
  
  ce27a6ca
21 Jun, 2022 19 commits
- Add another recommendation to README · f38f346d
  Gustaf Ahdritz authored Jun 21, 2022
  
  f38f346d
- Fixing model generation · 43b8c6f9
  Sam DeLuca authored Jun 21, 2022
  
  43b8c6f9
- Refactor inplace operations, fix training · 143ba486
  Gustaf Ahdritz authored Jun 21, 2022
  
  143ba486
- wip · fcee03aa
  Sam DeLuca authored Jun 21, 2022
  
  fcee03aa
- Add missing bracket · f1402490
  Gustaf Ahdritz authored Jun 21, 2022
  
  f1402490
- Add SLURM script acknowledgement · 4e934f74
  Gustaf Ahdritz authored Jun 21, 2022
  
  4e934f74
- Add SLURM alignment script · 4a3c3924
  Gustaf Ahdritz authored Jun 21, 2022
  
  4a3c3924
- Update file ID in OpenFold parameter download script · 5fbb0d0d
  Gustaf Ahdritz authored Jun 21, 2022
  
  5fbb0d0d
- Update inference script · 9dee6caa
  Gustaf Ahdritz authored Jun 21, 2022
  
  9dee6caa
- Add better AlphaFold-Gap support to PDB parsing scripts · 7642bef9
  Gustaf Ahdritz authored Jun 21, 2022
  
  7642bef9
- Disable zero centering again · 2549752d
  Gustaf Ahdritz authored Jun 21, 2022
  
  2549752d
- Disable zero centering · 632acfaf
  Gustaf Ahdritz authored Jun 21, 2022
  
  632acfaf
- Move chunking code, add memory optimizations · 5aa21eae
  Gustaf Ahdritz authored Jun 21, 2022
  
  5aa21eae
- Add offloading to evoformer · fe9ad07e
  Gustaf Ahdritz authored Jun 21, 2022
  
  fe9ad07e
- Add offloading to structure module · b40fab25
  Gustaf Ahdritz authored Jun 21, 2022
  
  b40fab25
- Update config with offloading option · 7d9e6830
  Gustaf Ahdritz authored Jun 21, 2022
  
  7d9e6830
- Bump up OpenFold's version number · 887b4a71
  Gustaf Ahdritz authored Jun 21, 2022
  
  887b4a71
- Update README · 84fa8d95
  Gustaf Ahdritz authored Jun 21, 2022
  
  84fa8d95
- Update banner · 3d6d51ce
  Gustaf Ahdritz authored Jun 21, 2022
  
  3d6d51ce
17 Jun, 2022 2 commits
- Scale back chunk size tuning a little · 96ca6460
  Gustaf Ahdritz authored Jun 17, 2022
  
  96ca6460
- Move parameter downloads · f8f74006
  Gustaf Ahdritz authored Jun 17, 2022
  
  f8f74006