Commits · 0434866fec2608fedb9b95352792114e93d70cba · OpenDAS / OpenFold

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11 Mar, 2022 1 commit
- Merge branch 'main' into multimer · 0434866f
  Gustaf Ahdritz authored Mar 10, 2022
  
  0434866f
10 Mar, 2022 1 commit
- Add custom LR scheduler · c113e110
  Gustaf Ahdritz authored Mar 09, 2022
  
  c113e110
09 Mar, 2022 1 commit
- Continue work on AlphaFold-Multimer · 57f869d6
  Gustaf Ahdritz authored Mar 09, 2022
  
  57f869d6
24 Feb, 2022 2 commits
- Continue multimer implementation · 100485dd
  Gustaf Ahdritz authored Feb 24, 2022
  
  100485dd
- Merge branch 'main' of ssh://github.com/aqlaboratory/openfold into multimer · e1b69c13
  Gustaf Ahdritz authored Feb 23, 2022
  
  e1b69c13
23 Feb, 2022 1 commit
- Fix typo in training script · 4a613bbe
  Gustaf Ahdritz authored Feb 23, 2022
  
  4a613bbe
22 Feb, 2022 8 commits
- Fix another undefined reference in training script · ff29bddb
  Gustaf Ahdritz authored Feb 22, 2022
  
  ff29bddb
- Remove redundant parameter in training script · 8f9865c3
  Gustaf Ahdritz authored Feb 22, 2022
  
  8f9865c3
- Fix undefined reference in training script · fd95b577
  Gustaf Ahdritz authored Feb 22, 2022
  
  fd95b577
- Add reference to specific issue · e6263425
  Gustaf Ahdritz authored Feb 22, 2022
  
  e6263425
- One last adjustment to generate_chain_data_cache.py · 950b02f0
  Gustaf Ahdritz authored Feb 22, 2022
  
  950b02f0
- Adjust default behavior of generate_chain_data_cache.py · 39860f93
  Gustaf Ahdritz authored Feb 22, 2022
  
  39860f93
- Fix chain data cache script bug, improve logging · 4c7c30b1
  Gustaf Ahdritz authored Feb 22, 2022
  
  4c7c30b1
- Start implementing Multimer · e699d7d2
  Gustaf Ahdritz authored Feb 22, 2022
  
  e699d7d2
18 Feb, 2022 2 commits
- Fix typo · 61d004a2
  Gustaf Ahdritz authored Feb 17, 2022
  
  61d004a2
- Fix name of new trainer option · cf01fe0b
  Gustaf Ahdritz authored Feb 17, 2022
  
  cf01fe0b
17 Feb, 2022 3 commits
- Add model config preset option · 8451dc68
  Gustaf Ahdritz authored Feb 17, 2022
  
  8451dc68
- Adjust formatting in evoformer.py · 3a3717cc
  Gustaf Ahdritz authored Feb 17, 2022
  
  3a3717cc
- Fix bug in evoformer · 484ce867
  Gustaf Ahdritz authored Feb 17, 2022
  
  484ce867
14 Feb, 2022 1 commit
- Correct wording in README · 5eb86a78
  Gustaf Ahdritz authored Feb 14, 2022
  
  5eb86a78
13 Feb, 2022 1 commit
- Remove undefined reference · 49e21841
  Gustaf Ahdritz authored Feb 12, 2022
  
  49e21841
11 Feb, 2022 2 commits
- Improve logging · 50f72d45
  Gustaf Ahdritz authored Feb 10, 2022
  
  50f72d45
- Add missing function · a3e8ebbc
  Gustaf Ahdritz authored Feb 10, 2022
  
  a3e8ebbc
10 Feb, 2022 3 commits
- Change name of prot data cache · b9faee76
  Gustaf Ahdritz authored Feb 10, 2022
  
  b9faee76
- Correct description of mmCIF cache · 2864b7ca
  Gustaf Ahdritz authored Feb 09, 2022
  
  2864b7ca
- Add note about chain data cache script · 30f92c45
  Gustaf Ahdritz authored Feb 09, 2022
  
  30f92c45
08 Feb, 2022 5 commits
- Remove leftover if condition · c6e82f02
  Gustaf Ahdritz authored Feb 08, 2022
  
  c6e82f02
- Change config preset in training script · 60d3b198
  Gustaf Ahdritz authored Feb 08, 2022
  
  60d3b198
- Fix config presets · 16d75057
  Gustaf Ahdritz authored Feb 08, 2022
  
  16d75057
- Merge branch 'main' of github.com:aqlaboratory/openfold into main · 17015611
  Gustaf Ahdritz authored Feb 08, 2022
  
  17015611
- Remove unused option from config · 28a4c4d9
  Gustaf Ahdritz authored Feb 08, 2022
  
  28a4c4d9
06 Feb, 2022 3 commits
- Remove buggy DeepSpeed LR scheduler · 32c137e2
  Gustaf Ahdritz authored Feb 06, 2022
  
  32c137e2
- Add checkpointing to README sample command · 01367e36
  Gustaf Ahdritz authored Feb 06, 2022
  
  01367e36
- Update training script · fbec92cb
  Gustaf Ahdritz authored Feb 06, 2022
  
  fbec92cb
05 Feb, 2022 2 commits
- Fix bugs in chain data cache script · 70362e4b
  Gustaf Ahdritz authored Feb 05, 2022
  
  70362e4b
- Add chain data cache generator · 3b82ddb7
  Gustaf Ahdritz authored Feb 04, 2022
  
  3b82ddb7
04 Feb, 2022 4 commits
- Revert changes to mmcif cache gen script · a46f1b12
  Gustaf Ahdritz authored Feb 04, 2022
  
  a46f1b12
- Finish updating license info · 7f9f5326
  Gustaf Ahdritz authored Feb 04, 2022
  
  7f9f5326
- Update param license in notebook · 3bfe6f99
  Gustaf Ahdritz authored Feb 04, 2022
  
  3bfe6f99
- Un-comment lines in alignment script · 7f3a48ee
  Gustaf Ahdritz authored Feb 04, 2022
  
  7f3a48ee