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Commit ffc9b3f6 authored by jnwei's avatar jnwei
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updates biopython version to 1.80 in colab notebook

parent 6384d793
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notebooks/OpenFold.ipynb
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...@@ -111,7 +111,7 @@ ...@@ -111,7 +111,7 @@
"os.system(\"wget -qnc https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh\")\n", "os.system(\"wget -qnc https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh\")\n",
"os.system(\"bash Mambaforge-Linux-x86_64.sh -bfp /usr/local\")\n", "os.system(\"bash Mambaforge-Linux-x86_64.sh -bfp /usr/local\")\n",
"os.system(\"mamba config --set auto_update_conda false\")\n", "os.system(\"mamba config --set auto_update_conda false\")\n",
"os.system(f\"mamba install -y -c conda-forge -c bioconda kalign2=2.04 hhsuite=3.3.0 openmm=7.7.0 python={python_version} pdbfixer biopython=1.79\")\n", "os.system(f\"mamba install -y -c conda-forge -c bioconda kalign2=2.04 hhsuite=3.3.0 openmm=7.7.0 python={python_version} pdbfixer biopython=1.80\")\n",
"os.system(\"pip install -q torch ml_collections py3Dmol modelcif\")\n", "os.system(\"pip install -q torch ml_collections py3Dmol modelcif\")\n",
"\n", "\n",
"try:\n", "try:\n",
......
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