"examples/llm/git@developer.sourcefind.cn:OpenDAS/dynamo.git" did not exist on "19a8a6ec39f820cf2d2cd591a68fb5e668958c7a"
Commit 6384d793 authored by jnwei's avatar jnwei
Browse files

Removes mpi4py from environment.yml -- not supported for Docker builds

parent 49804a59
...@@ -51,6 +51,11 @@ To use OpenFold on CUDA 12 environment rather than a CUDA 11 environment. ...@@ -51,6 +51,11 @@ To use OpenFold on CUDA 12 environment rather than a CUDA 11 environment.
In step 1, use the branch [`pl_upgrades`](https://github.com/aqlaboratory/openfold/tree/pl_upgrades) rather than the main branch, i.e. replace the URL in step 1 with https://github.com/aqlaboratory/openfold/tree/pl_upgrades In step 1, use the branch [`pl_upgrades`](https://github.com/aqlaboratory/openfold/tree/pl_upgrades) rather than the main branch, i.e. replace the URL in step 1 with https://github.com/aqlaboratory/openfold/tree/pl_upgrades
Follow the rest of the steps of [Installation Guide](#Installation) Follow the rest of the steps of [Installation Guide](#Installation)
### MPI
To use OpenFold with MPI support, you will need to add the package [`mpi4py`](https://pypi.org/project/mpi4py/). This can be done with pip in your OpenFold environment, e.g. `$ pip install mpi4py`.
### Install OpenFold parameters without aws ### Install OpenFold parameters without aws
If you don't have access to `aws` on your system, you can use a different download source: If you don't have access to `aws` on your system, you can use a different download source:
......
...@@ -32,7 +32,6 @@ dependencies: ...@@ -32,7 +32,6 @@ dependencies:
- bioconda::mmseqs2 - bioconda::mmseqs2
- pytorch::pytorch=1.12.* - pytorch::pytorch=1.12.*
- pip: - pip:
- mpi4py==3.1.5
- deepspeed==0.12.4 - deepspeed==0.12.4
- dm-tree==0.1.6 - dm-tree==0.1.6
- git+https://github.com/NVIDIA/dllogger.git - git+https://github.com/NVIDIA/dllogger.git
......
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